Lsi01G008440 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G008440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Basic helix loop helix (BHLH) DNA-binding family protein
Location	chr01 : 6761481 .. 6763295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAATTATAATTAGGAATTTGAATCTACATTCATGGATGATTTGGAAATGAACCCTTTTGATTGCGCGCTAGAGGATCTGAGCAATTTCCAAGCATTCTCCGACGAAAGCTACACATCCCATGTAGATGTAGAGAATTCCGTACAAACTCCGGCGCAGCCGCCGGCTAAGCAGCCAAGGACTACCGGCACCGGCACGAGCCGTAAAATTGGTTCAATGGGTGCTTCTTCTTCCTCGTCCCACATCATTTCATTTGGGAACTCCCATTCTTCTTGTAACCCCAAATTGAGTGGCCGGAACATTGATTTGTCTTCGGTGGTTGCTCAACCAGCTTCCTATGACGATGATAATAATAATAATAATAATAATAATAATATTCCAAATTATTATTGTTCCCCAAGAAATCATGGAGTGGGAATCAAGAGATCTGCTGCGGCTGTCAATAATAATCGCACCCCTTTGCTTGCTCAAGATCATGTCATAGCTGAAAGAAAGCGTAGAGAAAAACTCAGCCAGCGATTTGTTGCTCTTTCCGCCCTTATTCCTGATCTCAAGAAGGTGATTTATTTTAATATTCCCTATATATCATAATTTCTCTTCTTCCTTCCATTTAAATGCAAATTTAGTCCACTTTAACTGAAAAATTCTAACTTTTTCTAAAACACAGGACTAAAAATTGTAATTTAAATTAGATGAGTTCTAACTTACATTCCTACTTTGATACCATATTAAACCGTTGATGAGTTATAGTAAGTTTGATATATCAATACTTCAACAGGGAATCATATATATCAAAAGTTAAAAGTTTTAAATTAGATCCAAGTTTAAATTTATTTTGAATCATTCAAATTACACTAGGTGCTTTCAAGAAATACCACTTCGCCTAAAAGTTTATGTGAGATTTAACCTTTTTTTTTTAATCTCTTAAAAAAATGTAAACTTTTTATATATTCAAATTCTTAATAGCTCCAATGGTTTTTGTAATAGATGGATAAAGCCTCCATTCTTGGGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAATGAACAAACAGCCAAAGCAACAGTGGAATCAGTGGTTTTTGTGAACAAATCATCGGACGACGTCACTACCGTCGTCGTTAGCGATGATTCCTCGGAGGAAAATAGCTTGTCGTCGGACGGAGCGATTCCAGACATAGAAGCAAGAGTGTCTGGGAAGGATGTTCTGTTGAGGATTCATAGCAAGAAATGCAAAGGCTGTCTTTCAAATATATTAAACCAAATAGAGAAGCTTAATCTGACAGTTCTCAACTCCAGTGCCTTGCCATTTGGCAATTTTAGGCTTGATATAACTATTATTGCTCAGGTACTTAAATACAAATAATTCTTTTTAATTTTTCTTGACATATATATTTTTTAAAAATATTTTTAATTTTGTGGAGATTGAGGTTTAATGGGACTAATGTAATTTTCTTAATTATCTAATTTGCAGATGGATGATGATTTTTCCATGACAGTGAAGGAACTTGTGCAGAAACTCAGACAGGCTTCTCTTGAATTCGTGTAAATTTACAAATGTTGAATTTCCCCCCACAATTAATCCTTAATCTTAGAGAAAAACAAAATAATAAAGCCTGTGGAATCCCCAATTAAGATTTTTTTTTTCCTTTTTCCTTTGAATTTTTTTGCGTGGGGCAGATCTTTGACCACGTTAAGGAAATTTAGGAAAACAAAACATCCACATTTGCTGTAAATCAAGTTGTTTTTCCCCCTCCTTTTAGATTCAAATTTTTGGGACAGATCTCCTTTGCACTCG

mRNA sequence

GGTAATTATAATTAGGAATTTGAATCTACATTCATGGATGATTTGGAAATGAACCCTTTTGATTGCGCGCTAGAGGATCTGAGCAATTTCCAAGCATTCTCCGACGAAAGCTACACATCCCATGTAGATGTAGAGAATTCCGTACAAACTCCGGCGCAGCCGCCGGCTAAGCAGCCAAGGACTACCGGCACCGGCACGAGCCGTAAAATTGGTTCAATGGGTGCTTCTTCTTCCTCGTCCCACATCATTTCATTTGGGAACTCCCATTCTTCTTGTAACCCCAAATTGAGTGGCCGGAACATTGATTTGTCTTCGGTGGTTGCTCAACCAGCTTCCTATGACGATGATAATAATAATAATAATAATAATAATAATATTCCAAATTATTATTGTTCCCCAAGAAATCATGGAGTGGGAATCAAGAGATCTGCTGCGGCTGTCAATAATAATCGCACCCCTTTGCTTGCTCAAGATCATGTCATAGCTGAAAGAAAGCGTAGAGAAAAACTCAGCCAGCGATTTGTTGCTCTTTCCGCCCTTATTCCTGATCTCAAGAAGATGGATAAAGCCTCCATTCTTGGGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAATGAACAAACAGCCAAAGCAACAGTGGAATCAGTGGTTTTTGTGAACAAATCATCGGACGACGTCACTACCGTCGTCGTTAGCGATGATTCCTCGGAGGAAAATAGCTTGTCGTCGGACGGAGCGATTCCAGACATAGAAGCAAGAGTGTCTGGGAAGGATGTTCTGTTGAGGATTCATAGCAAGAAATGCAAAGGCTGTCTTTCAAATATATTAAACCAAATAGAGAAGCTTAATCTGACAGTTCTCAACTCCAGTGCCTTGCCATTTGGCAATTTTAGGCTTGATATAACTATTATTGCTCAGATGGATGATGATTTTTCCATGACAGTGAAGGAACTTGTGCAGAAACTCAGACAGGCTTCTCTTGAATTCGTGTAAATTTACAAATGTTGAATTTCCCCCCACAATTAATCCTTAATCTTAGAGAAAAACAAAATAATAAAGCCTGTGGAATCCCCAATTAAGATTTTTTTTTTCCTTTTTCCTTTGAATTTTTTTGCGTGGGGCAGATCTTTGACCACGTTAAGGAAATTTAGGAAAACAAAACATCCACATTTGCTGTAAATCAAGTTGTTTTTCCCCCTCCTTTTAGATTCAAATTTTTGGGACAGATCTCCTTTGCACTCG

Coding sequence (CDS)

ATGGATGATTTGGAAATGAACCCTTTTGATTGCGCGCTAGAGGATCTGAGCAATTTCCAAGCATTCTCCGACGAAAGCTACACATCCCATGTAGATGTAGAGAATTCCGTACAAACTCCGGCGCAGCCGCCGGCTAAGCAGCCAAGGACTACCGGCACCGGCACGAGCCGTAAAATTGGTTCAATGGGTGCTTCTTCTTCCTCGTCCCACATCATTTCATTTGGGAACTCCCATTCTTCTTGTAACCCCAAATTGAGTGGCCGGAACATTGATTTGTCTTCGGTGGTTGCTCAACCAGCTTCCTATGACGATGATAATAATAATAATAATAATAATAATAATATTCCAAATTATTATTGTTCCCCAAGAAATCATGGAGTGGGAATCAAGAGATCTGCTGCGGCTGTCAATAATAATCGCACCCCTTTGCTTGCTCAAGATCATGTCATAGCTGAAAGAAAGCGTAGAGAAAAACTCAGCCAGCGATTTGTTGCTCTTTCCGCCCTTATTCCTGATCTCAAGAAGATGGATAAAGCCTCCATTCTTGGGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAATGAACAAACAGCCAAAGCAACAGTGGAATCAGTGGTTTTTGTGAACAAATCATCGGACGACGTCACTACCGTCGTCGTTAGCGATGATTCCTCGGAGGAAAATAGCTTGTCGTCGGACGGAGCGATTCCAGACATAGAAGCAAGAGTGTCTGGGAAGGATGTTCTGTTGAGGATTCATAGCAAGAAATGCAAAGGCTGTCTTTCAAATATATTAAACCAAATAGAGAAGCTTAATCTGACAGTTCTCAACTCCAGTGCCTTGCCATTTGGCAATTTTAGGCTTGATATAACTATTATTGCTCAGATGGATGATGATTTTTCCATGACAGTGAAGGAACTTGTGCAGAAACTCAGACAGGCTTCTCTTGAATTCGTGTAA

Protein sequence

MDDLEMNPFDCALEDLSNFQAFSDESYTSHVDVENSVQTPAQPPAKQPRTTGTGTSRKIGSMGASSSSSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIPNYYCSPRNHGVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV

Homology

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BLAST of Lsi01G008440 vs. Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 108/218 (49.54%), Postives = 145/218 (66.51%), Query Frame = 1


Query: 112 NNNIPNYYCSPRNHGVG----------IKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQ 171
           N+N PN   SP++  +G          I+ +  A +  R+   AQDH++AERKRREKL+Q
Sbjct: 81  NHNSPNLIFSPKDEEIGLPEHKKAELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQ 140

Query: 172 RFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSS--D 231
           RFVALSALIP LKKMDKAS+LGDAI +IK LQE +K   EQ  + T+ESVV V KSS   
Sbjct: 141 RFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLVL 200

Query: 232 DVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNL 291
           D      S  SS+ N  SS   +P+IE RVSGKDVL++I  +K KG +  I+ +IEKL L
Sbjct: 201 DENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGL 260

Query: 292 TVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKL 318
           ++ NS+ LPFG    DI+IIAQ +++F M ++++V+ L
Sbjct: 261 SITNSNVLPFGP-TFDISIIAQKNNNFDMKIEDVVKNL 297

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BLAST of Lsi01G008440 vs. Swiss-Prot
Match: BH019_ARATH (Transcription factor bHLH19 OS=Arabidopsis thaliana GN=BHLH19 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-38
Identity = 97/200 (48.50%), Postives = 136/200 (68.00%), Query Frame = 1


Query: 126 GVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDA 185
           G G KR   + +  R+P+LA++HV+AERKRREKLS++F+ALSAL+P LKK DK +IL DA
Sbjct: 99  GRGTKRKTCS-HGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDA 158

Query: 186 ITYIKDLQERLKVANEQT-AKATVESVVFVNKSS---DDVTTVVVSDDSSEENSLSSDGA 245
           I+ +K LQE+L+   E+  A   +ES++ V KS    D+   +      S    +  D A
Sbjct: 159 ISRMKQLQEQLRTLKEEKEATRQMESMILVKKSKVFFDEEPNL----SCSPSVHIEFDQA 218

Query: 246 IPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQ 305
           +P+IEA++S  D+L+RI  +K KGC+ NILN IE   L + NS  LPFG+  LDIT++AQ
Sbjct: 219 LPEIEAKISQNDILIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQ 278

Query: 306 MDDDFSMTV-KELVQKLRQA 321
           MD DFSM++ K+LV+ LR A
Sbjct: 279 MDKDFSMSILKDLVRNLRLA 293

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BLAST of Lsi01G008440 vs. Swiss-Prot
Match: BH020_ARATH (Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.8e-36
Identity = 114/304 (37.50%), Postives = 162/304 (53.29%), Query Frame = 1


Query: 41  AQPPAKQPRTTGTGTSRKIGSMGASSS---SSHIISFGNSHSSCNPKLSGRNIDLSSVVA 100
           A+ P KQ +T     S       +SSS   +S +ISFG+  +  NP      ++ S   +
Sbjct: 49  AERPTKQMKTNNNMNSTSSSPSSSSSSGSRTSQVISFGSPDTKTNP------VETSLNFS 108

Query: 101 QPASYDDDNNNNNNNNNIPNYYCSPRNHGVGIKRSAAAVNNNRT-PLLAQDHVIAERKRR 160
              S D                       VG KR     N  R  P L ++HV+AERKRR
Sbjct: 109 NQVSMDQK---------------------VGSKRKDCVNNGGRREPHLLKEHVLAERKRR 168

Query: 161 EKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQ--TAKATVESVVFV 220
           +KL++R +ALSAL+P LKK DKA++L DAI ++K LQER+K   E+    K   +S++ V
Sbjct: 169 QKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVVTKKMDQSIILV 228

Query: 221 NKSSDDVTTVVVSDDSSEENSLSSDGA---------------IPDIEARVSGKDVLLRIH 280
            +S      V + DDSS  +S  S  +               +P IEARVS +D+L+R+H
Sbjct: 229 KRSQ-----VYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRDLLIRVH 288

Query: 281 SKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQ 324
            +K KGC+  IL+ +EK  L V+NS  LPFGN  L ITI+ +MD+ FS  V+E+V+ +R 
Sbjct: 289 CEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTKMDNKFSRPVEEVVKNIRV 320

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BLAST of Lsi01G008440 vs. Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 5.6e-34
Identity = 123/323 (38.08%), Postives = 174/323 (53.87%), Query Frame = 1


Query: 18  NFQAFSDESYTSHVDV------ENSVQTPAQ--PPAKQPRTTGTGTSRKIGSMG--ASSS 77
           +F   +D SY   +++      E +  +P+   PP  +P      +S +I S     S+ 
Sbjct: 42  SFTTNNDPSYDDLIEMKPPKILETTYISPSSHLPPNSKPHHIHRHSSSRILSFEDYGSND 101

Query: 78  SSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIPNYYCSPRNHGV 137
             H  S    +S  +PKL  +         QP    D+ N                    
Sbjct: 102 MEHEYSPTYLNSIFSPKLEAQ--------VQPHQKSDEFNRK------------------ 161

Query: 138 GIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAIT 197
           G KR+     N      AQDH+IAERKRREKL+QRFVALSAL+P LKKMDKAS+LGDA+ 
Sbjct: 162 GTKRAQPFSRNQSN---AQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALK 221

Query: 198 YIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEENSLS-----SDGAI 257
           +IK LQER+    EQ  +  +ES+V V KS       ++ DD+++  S S     SD  +
Sbjct: 222 HIKYLQERVGELEEQKKERRLESMVLVKKSK------LILDDNNQSFSSSCEDGFSDLDL 281

Query: 258 PDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQM 317
           P+IE R S +DVL++I  +K KG L+ I+ +IEKL++ + NSS L FG   LDITIIA+ 
Sbjct: 282 PEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAKK 328

Query: 318 DDDFSMTVKELVQKLRQASLEFV 326
           + DF MT+ ++V+ LR A   F+
Sbjct: 342 ESDFDMTLMDVVKSLRSALSNFI 328

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BLAST of Lsi01G008440 vs. Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-14
Identity = 51/155 (32.90%), Postives = 87/155 (56.13%), Query Frame = 1


Query: 130 KRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAITYI 189
           KR     N    PL   +HV AER+RREKL+QRF AL +++P++ KMDKAS+LGDAI+YI
Sbjct: 381 KRGRKPANGREEPL---NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYI 440

Query: 190 KDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEENSLSSDGAIPDIEARV 249
           K+LQE++K+  ++         V  +KS  +  T+ V +              P+++ + 
Sbjct: 441 KELQEKVKIMEDER--------VGTDKSLSESNTITVEES-------------PEVDIQA 500

Query: 250 SGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNS 285
             ++V++R+ S       S I+  +   N++++ +
Sbjct: 501 MNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEA 511

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BLAST of Lsi01G008440 vs. TrEMBL
Match: A0A0A0KG27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497110 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 3.1e-124
Identity = 260/330 (78.79%), Postives = 283/330 (85.76%), Query Frame = 1


Query: 1   MDDLEMNPFDCALEDLSNFQAFSDESYTSHVDVENS-VQTPAQPPAKQPRTTGTGTSRKI 60
           M+DLEMNPF+C LE+LS+FQ FSDESYTSHVD++NS VQTPA PP  +   T +G+SR+I
Sbjct: 19  MNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPAAPPPAKQARTSSGSSRRI 78

Query: 61  GSMGASSSSSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIPNYY 120
            SM  SSSSS IISFGN             I++S +VAQP SYD    NNNNNN   NYY
Sbjct: 79  SSMATSSSSSQIISFGN-------------IEMSPMVAQP-SYD----NNNNNNKTSNYY 138

Query: 121 CSP-RNHGVGIKRSAAAV--NNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKM 180
           CSP +NHGVGIKRSAAA   +NNR+PL+AQDHV+AERKRREKLSQRFVALSALIPDLKKM
Sbjct: 139 CSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKM 198

Query: 181 DKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEEN-S 240
           DKASILGDAITYIKDLQERLKVANEQ AKATVESVVFVNK SDD +T++ SDDSSEEN S
Sbjct: 199 DKASILGDAITYIKDLQERLKVANEQAAKATVESVVFVNK-SDDASTIIASDDSSEENSS 258

Query: 241 LSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD 300
            SSDGAIPD+EARVSGKDVLLRIH KKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD
Sbjct: 259 SSSDGAIPDVEARVSGKDVLLRIHGKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD 318

Query: 301 ITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           ITIIAQMDDDFSMTVKELVQKLRQASLEF+
Sbjct: 319 ITIIAQMDDDFSMTVKELVQKLRQASLEFM 329

[Close]

BLAST of Lsi01G008440 vs. TrEMBL
Match: M5WL55_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017640mg PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.6e-66
Identity = 174/352 (49.43%), Postives = 225/352 (63.92%), Query Frame = 1


Query: 5   EMNPFDCALEDLSNFQAFSDESYTSHVDV---------ENSVQTPAQP-----PAKQPRT 64
           EMN  D +L+DL NFQ+FS ESY+S+ +            S++TP Q      PAKQP+ 
Sbjct: 11  EMNSLDYSLDDL-NFQSFSSESYSSYPNFTPKATHNFSNASIETPQQAGTHERPAKQPKN 70

Query: 65  TGTG----TSRKIGSMGASSSSSHIISFGNSHSS---------------CNPK----LSG 124
             T     T   I +  ASSSSSH+ISF NS+SS                 PK     S 
Sbjct: 71  HTTWNPCTTDHTIMAKAASSSSSHLISFDNSNSSPPTSSQQFYGTLDNTMKPKNEVEYSN 130

Query: 125 RNIDLSSVVAQPASYDDDNNNNNNNNNIPNYYCSPRNHGVGIKRSAAAVNNNRTPLLAQD 184
             ++L+++++Q  SYD                CSP+ HG GIKR+A      R+PL AQD
Sbjct: 131 GKLNLTTLISQ-GSYDPQT-------------CSPK-HGQGIKRAATVT---RSPLHAQD 190

Query: 185 HVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKAT 244
           HV+AERKRREKLSQRF+ALSAL+P LKKMDKAS+LGDAI Y+K LQER K+  E+  K T
Sbjct: 191 HVLAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYVKHLQERTKMLEEKAVKKT 250

Query: 245 VESVVFVNKSSDDVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCL 304
           VE+VVFV ++       + S D + E+  SSD  +P+IEARVS K+VL+R+H +K KGCL
Sbjct: 251 VEAVVFVKRTQYSADDDISSSDENFES--SSDQPLPEIEARVSDKEVLIRVHCEKTKGCL 310

Query: 305 SNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQ 320
           + IL++IE L+LT++NSS LPFGN  LDIT+IAQMD +FSMTVK+LV+ LRQ
Sbjct: 311 AKILSEIESLDLTIVNSSVLPFGNSTLDITVIAQMDAEFSMTVKDLVKNLRQ 341

[Close]

BLAST of Lsi01G008440 vs. TrEMBL
Match: A0A061DIU4_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_000894 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 9.5e-57
Identity = 157/342 (45.91%), Postives = 210/342 (61.40%), Query Frame = 1


Query: 6   MNPFDCALEDLSNFQAFSDESYTSHVDVENSVQTPA----------------QPPAKQPR 65
           MNP D A +DL NFQ+FS ESY+S+ +++  + +                  Q P KQ +
Sbjct: 26  MNPMDYAFDDL-NFQSFSSESYSSYQNIDQKISSHNNMNGSCIGASHQVDNFQRPMKQLK 85

Query: 66  TTGTGT--SRKIGSMGASSSSSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNN 125
           T    +  +  I    +SS SSHIISF N +SS  P +S +   L   V           
Sbjct: 86  TNSPNSCITENIPPKASSSPSSHIISFDNWNSS--PAISQQYYGLDCAV----------- 145

Query: 126 NNNNNNNIPNYYCSPRNHGVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALS 185
                         P+N    + +   ++   RTPL AQDHVIAERKRREKLSQRF++LS
Sbjct: 146 -------------KPKNE---VSKRVGSLT--RTPLHAQDHVIAERKRREKLSQRFISLS 205

Query: 186 ALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVS 245
           ALIP LKK DKAS+LGDAI Y+K LQER+    EQ AK T+ESV+FV K      T + +
Sbjct: 206 ALIPGLKKTDKASVLGDAIKYLKQLQERVTTLEEQVAKKTMESVIFVRK------TQIFA 265

Query: 246 DD---SSEENSLS-SDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLN 305
           DD   SS+EN  S S+  +P+IEARV+ KDVL+RIH +K KGC+ NI+N++EKL+L+VLN
Sbjct: 266 DDETSSSDENFDSHSNKPLPEIEARVADKDVLIRIHCEKNKGCIPNIINEVEKLHLSVLN 325

Query: 306 SSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           ++ LPFG    DITI+A+M+ +FSMTVK+LV+ LR A L+F+
Sbjct: 326 TNVLPFGQATQDITIVAKMEAEFSMTVKDLVKSLRMALLKFM 329

[Close]

BLAST of Lsi01G008440 vs. TrEMBL
Match: A0A0D2SIJ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G229000 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 154/340 (45.29%), Postives = 202/340 (59.41%), Query Frame = 1


Query: 6   MNPFDCALEDLSNFQAFSDESYTSHVDVENSVQTPAQP-----------PAKQPRTTGTG 65
           MNP D + +D  NF++FS ESYTS+ ++++S     +            P KQ +T+ + 
Sbjct: 26  MNPIDFSFDDF-NFESFSPESYTSYTNIDHSHGLHIEASHNVGDDDFRRPMKQLKTSSSN 85

Query: 66  -----TSRKIGSMGASSSSSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNN 125
                 +  I    ASSSSSHIISF NS+SS                             
Sbjct: 86  WKSSCITDNIPPKAASSSSSHIISFDNSNSS----------------------------- 145

Query: 126 NNNNNIPNYYCS-PRNHGVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSA 185
               +I  +YC   R+     + S    ++ R PL AQDHVIAERKRREKLSQRF++LSA
Sbjct: 146 --PPDISQHYCGLDRDLKRKNEVSKRVGSSTRAPLYAQDHVIAERKRREKLSQRFISLSA 205

Query: 186 LIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKS---SDDVTTVV 245
           LIP LKK DKAS+LGDAI Y+K LQER+     Q A  T+ESV+ V K+   SDD T+  
Sbjct: 206 LIPGLKKNDKASVLGDAIKYLKQLQERVGTLENQVATKTMESVIIVRKTQIYSDDETSSC 265

Query: 246 VSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSS 305
             +  S+ N+       P+IEARVS KDVL+RIH +K KGC+ NI+N++EKL+L VLN++
Sbjct: 266 GENFESQSNN-----PFPEIEARVSEKDVLIRIHCEKNKGCIPNIINEVEKLHLCVLNTN 325

Query: 306 ALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
            LPFG   LDITI+AQM+ DFSMTVK+LV+ LR A L F+
Sbjct: 326 VLPFGQATLDITIVAQMEADFSMTVKDLVKSLRLALLNFM 328

[Close]

BLAST of Lsi01G008440 vs. TrEMBL
Match: A0A0D2QXV7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G228900 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 157/330 (47.58%), Postives = 210/330 (63.64%), Query Frame = 1


Query: 20  QAFSDESYTSHVDV-----------ENSVQTPAQPPAKQPRTTGTGTSRKIGSMGASSSS 79
           Q+FS ESY+S+ ++            +S++TP   PAK  +TT             SS +
Sbjct: 49  QSFSSESYSSYPNLYTKNTTTTISGSSSIETPDYRPAKHLKTT----HHHHVPPKPSSPT 108

Query: 80  SHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIP----------NY 139
           S I+SFGNS+S   P  S  +         P    D+  ++ N N +P          NY
Sbjct: 109 SQILSFGNSNSL--PATSHHHYYNVDNTVNPK---DETLSSGNMNFLPPVTNGPYESTNY 168

Query: 140 YCSPRNHGVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDK 199
                NHGV  KR+ +     RTP +AQDH+IAERKRREKLSQRF+ALSA++P LKKMDK
Sbjct: 169 APKINNHGV--KRTYSMT---RTPSVAQDHIIAERKRREKLSQRFIALSAIVPGLKKMDK 228

Query: 200 ASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNK---SSDDVTTVVVSDDSSEENS 259
           AS+LGDAI Y+K LQER+KV  EQT K TVESVVFV K   S+DD ++    +D++ E  
Sbjct: 229 ASVLGDAIKYVKQLQERVKVLEEQTKKRTVESVVFVRKSQLSADDESS--SCEDNNSELG 288

Query: 260 LSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD 319
            SSD A+P+IEARVS  DVL+RIH +  KG +  IL++IE L+L+V+NS+ALPFGN  LD
Sbjct: 289 PSSDAALPEIEARVSDHDVLVRIHCENHKGFVPKILSEIENLHLSVVNSTALPFGNSTLD 348

Query: 320 ITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           ITIIA+ D +F++TVK+LV+ +R A L+F+
Sbjct: 349 ITIIAKKDSEFNITVKDLVKDIRVALLKFM 362

[Close]

BLAST of Lsi01G008440 vs. TAIR10
Match: AT2G22750.2 (AT2G22750.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 7.7e-42
Identity = 108/218 (49.54%), Postives = 145/218 (66.51%), Query Frame = 1


Query: 112 NNNIPNYYCSPRNHGVG----------IKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQ 171
           N+N PN   SP++  +G          I+ +  A +  R+   AQDH++AERKRREKL+Q
Sbjct: 81  NHNSPNLIFSPKDEEIGLPEHKKAELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQ 140

Query: 172 RFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSS--D 231
           RFVALSALIP LKKMDKAS+LGDAI +IK LQE +K   EQ  + T+ESVV V KSS   
Sbjct: 141 RFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLVL 200

Query: 232 DVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNL 291
           D      S  SS+ N  SS   +P+IE RVSGKDVL++I  +K KG +  I+ +IEKL L
Sbjct: 201 DENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGL 260

Query: 292 TVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKL 318
           ++ NS+ LPFG    DI+IIAQ +++F M ++++V+ L
Sbjct: 261 SITNSNVLPFGP-TFDISIIAQKNNNFDMKIEDVVKNL 297

[Close]

BLAST of Lsi01G008440 vs. TAIR10
Match: AT2G22760.1 (AT2G22760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-39
Identity = 97/200 (48.50%), Postives = 136/200 (68.00%), Query Frame = 1


Query: 126 GVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDA 185
           G G KR   + +  R+P+LA++HV+AERKRREKLS++F+ALSAL+P LKK DK +IL DA
Sbjct: 99  GRGTKRKTCS-HGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDA 158

Query: 186 ITYIKDLQERLKVANEQT-AKATVESVVFVNKSS---DDVTTVVVSDDSSEENSLSSDGA 245
           I+ +K LQE+L+   E+  A   +ES++ V KS    D+   +      S    +  D A
Sbjct: 159 ISRMKQLQEQLRTLKEEKEATRQMESMILVKKSKVFFDEEPNL----SCSPSVHIEFDQA 218

Query: 246 IPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQ 305
           +P+IEA++S  D+L+RI  +K KGC+ NILN IE   L + NS  LPFG+  LDIT++AQ
Sbjct: 219 LPEIEAKISQNDILIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQ 278

Query: 306 MDDDFSMTV-KELVQKLRQA 321
           MD DFSM++ K+LV+ LR A
Sbjct: 279 MDKDFSMSILKDLVRNLRLA 293

[Close]

BLAST of Lsi01G008440 vs. TAIR10
Match: AT2G22770.1 (AT2G22770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-37
Identity = 114/304 (37.50%), Postives = 162/304 (53.29%), Query Frame = 1


Query: 41  AQPPAKQPRTTGTGTSRKIGSMGASSS---SSHIISFGNSHSSCNPKLSGRNIDLSSVVA 100
           A+ P KQ +T     S       +SSS   +S +ISFG+  +  NP      ++ S   +
Sbjct: 49  AERPTKQMKTNNNMNSTSSSPSSSSSSGSRTSQVISFGSPDTKTNP------VETSLNFS 108

Query: 101 QPASYDDDNNNNNNNNNIPNYYCSPRNHGVGIKRSAAAVNNNRT-PLLAQDHVIAERKRR 160
              S D                       VG KR     N  R  P L ++HV+AERKRR
Sbjct: 109 NQVSMDQK---------------------VGSKRKDCVNNGGRREPHLLKEHVLAERKRR 168

Query: 161 EKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQ--TAKATVESVVFV 220
           +KL++R +ALSAL+P LKK DKA++L DAI ++K LQER+K   E+    K   +S++ V
Sbjct: 169 QKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVVTKKMDQSIILV 228

Query: 221 NKSSDDVTTVVVSDDSSEENSLSSDGA---------------IPDIEARVSGKDVLLRIH 280
            +S      V + DDSS  +S  S  +               +P IEARVS +D+L+R+H
Sbjct: 229 KRSQ-----VYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRDLLIRVH 288

Query: 281 SKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQ 324
            +K KGC+  IL+ +EK  L V+NS  LPFGN  L ITI+ +MD+ FS  V+E+V+ +R 
Sbjct: 289 CEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTKMDNKFSRPVEEVVKNIRV 320

[Close]

BLAST of Lsi01G008440 vs. TAIR10
Match: AT4G37850.1 (AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 146.4 bits (368), Expect = 3.1e-35
Identity = 123/323 (38.08%), Postives = 174/323 (53.87%), Query Frame = 1


Query: 18  NFQAFSDESYTSHVDV------ENSVQTPAQ--PPAKQPRTTGTGTSRKIGSMG--ASSS 77
           +F   +D SY   +++      E +  +P+   PP  +P      +S +I S     S+ 
Sbjct: 42  SFTTNNDPSYDDLIEMKPPKILETTYISPSSHLPPNSKPHHIHRHSSSRILSFEDYGSND 101

Query: 78  SSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIPNYYCSPRNHGV 137
             H  S    +S  +PKL  +         QP    D+ N                    
Sbjct: 102 MEHEYSPTYLNSIFSPKLEAQ--------VQPHQKSDEFNRK------------------ 161

Query: 138 GIKRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAIT 197
           G KR+     N      AQDH+IAERKRREKL+QRFVALSAL+P LKKMDKAS+LGDA+ 
Sbjct: 162 GTKRAQPFSRNQSN---AQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALK 221

Query: 198 YIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEENSLS-----SDGAI 257
           +IK LQER+    EQ  +  +ES+V V KS       ++ DD+++  S S     SD  +
Sbjct: 222 HIKYLQERVGELEEQKKERRLESMVLVKKSK------LILDDNNQSFSSSCEDGFSDLDL 281

Query: 258 PDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQM 317
           P+IE R S +DVL++I  +K KG L+ I+ +IEKL++ + NSS L FG   LDITIIA+ 
Sbjct: 282 PEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAKK 328

Query: 318 DDDFSMTVKELVQKLRQASLEFV 326
           + DF MT+ ++V+ LR A   F+
Sbjct: 342 ESDFDMTLMDVVKSLRSALSNFI 328

[Close]

BLAST of Lsi01G008440 vs. TAIR10
Match: AT2G46510.1 (AT2G46510.1 ABA-inducible BHLH-type transcription factor)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-15
Identity = 51/155 (32.90%), Postives = 87/155 (56.13%), Query Frame = 1


Query: 130 KRSAAAVNNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAITYI 189
           KR     N    PL   +HV AER+RREKL+QRF AL +++P++ KMDKAS+LGDAI+YI
Sbjct: 381 KRGRKPANGREEPL---NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYI 440

Query: 190 KDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEENSLSSDGAIPDIEARV 249
           K+LQE++K+  ++         V  +KS  +  T+ V +              P+++ + 
Sbjct: 441 KELQEKVKIMEDER--------VGTDKSLSESNTITVEES-------------PEVDIQA 500

Query: 250 SGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNS 285
             ++V++R+ S       S I+  +   N++++ +
Sbjct: 501 MNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEA 511

[Close]

BLAST of Lsi01G008440 vs. NCBI nr
Match: gi|449451351|ref|XP_004143425.1| (PREDICTED: transcription factor bHLH18-like [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 4.5e-124
Identity = 260/330 (78.79%), Postives = 283/330 (85.76%), Query Frame = 1


Query: 1   MDDLEMNPFDCALEDLSNFQAFSDESYTSHVDVENS-VQTPAQPPAKQPRTTGTGTSRKI 60
           M+DLEMNPF+C LE+LS+FQ FSDESYTSHVD++NS VQTPA PP  +   T +G+SR+I
Sbjct: 19  MNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPAAPPPAKQARTSSGSSRRI 78

Query: 61  GSMGASSSSSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIPNYY 120
            SM  SSSSS IISFGN             I++S +VAQP SYD    NNNNNN   NYY
Sbjct: 79  SSMATSSSSSQIISFGN-------------IEMSPMVAQP-SYD----NNNNNNKTSNYY 138

Query: 121 CSP-RNHGVGIKRSAAAV--NNNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKM 180
           CSP +NHGVGIKRSAAA   +NNR+PL+AQDHV+AERKRREKLSQRFVALSALIPDLKKM
Sbjct: 139 CSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKM 198

Query: 181 DKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEEN-S 240
           DKASILGDAITYIKDLQERLKVANEQ AKATVESVVFVNK SDD +T++ SDDSSEEN S
Sbjct: 199 DKASILGDAITYIKDLQERLKVANEQAAKATVESVVFVNK-SDDASTIIASDDSSEENSS 258

Query: 241 LSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD 300
            SSDGAIPD+EARVSGKDVLLRIH KKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD
Sbjct: 259 SSSDGAIPDVEARVSGKDVLLRIHGKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD 318

Query: 301 ITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           ITIIAQMDDDFSMTVKELVQKLRQASLEF+
Sbjct: 319 ITIIAQMDDDFSMTVKELVQKLRQASLEFM 329

[Close]

BLAST of Lsi01G008440 vs. NCBI nr
Match: gi|659079831|ref|XP_008440467.1| (PREDICTED: transcription factor bHLH18-like [Cucumis melo])

HSP 1 Score: 444.9 bits (1143), Expect = 1.2e-121
Identity = 259/330 (78.48%), Postives = 286/330 (86.67%), Query Frame = 1


Query: 1   MDDLEMNPFDCALEDLSNFQAFSDESYTSHVDVEN-SVQTP-AQPPAKQPRTTGTGTSRK 60
           M+DLEMNPF+C LE+LS+FQ FSDESYTSHVD++N SVQTP A PPAKQ RT+G+  SR+
Sbjct: 19  MNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNNSVQTPTAPPPAKQARTSGS--SRR 78

Query: 61  IGSMGASSSSSHIISFGNSHSSCNPKLSGRNIDLSSVVAQPASYDDDNNNNNNNNNIPNY 120
           I SM  SSSSS IISFGN             ++LSS+VAQP SYD     N NNN  PNY
Sbjct: 79  IASMATSSSSSQIISFGN-------------VELSSMVAQP-SYD-----NKNNNKTPNY 138

Query: 121 YCSP-RNHGVGIKRSAAAVN-NNRTPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKM 180
           YCSP +NHGVGIKRS AA+N NNR+PL+AQ+HV+AERKRREKLSQRFVALSALIPDLKKM
Sbjct: 139 YCSPNKNHGVGIKRSVAAMNSNNRSPLVAQEHVLAERKRREKLSQRFVALSALIPDLKKM 198

Query: 181 DKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSSDDVTTVVVSDDSSEEN-S 240
           DKASILGDAITYIKDLQERLKVANEQ AKATVESVVFVNK S+D +T+VVSDDSSEEN S
Sbjct: 199 DKASILGDAITYIKDLQERLKVANEQAAKATVESVVFVNK-SEDASTIVVSDDSSEENSS 258

Query: 241 LSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLD 300
            SSDGAIPD+EARVSGKDVLL+IH KKC GCLSNILNQIEKLNLTVLNSSALPFGNFR+D
Sbjct: 259 SSSDGAIPDVEARVSGKDVLLKIHCKKCTGCLSNILNQIEKLNLTVLNSSALPFGNFRVD 318

Query: 301 ITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           ITIIAQMDDDFS+TVKELVQKLRQASL+F+
Sbjct: 319 ITIIAQMDDDFSITVKELVQKLRQASLKFM 326

[Close]

BLAST of Lsi01G008440 vs. NCBI nr
Match: gi|764517173|ref|XP_011466489.1| (PREDICTED: transcription factor bHLH18-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 174/350 (49.71%), Postives = 227/350 (64.86%), Query Frame = 1


Query: 1   MDDLEMN-PFDCALEDLSNFQAFSDESYTSHVDVENSVQTPAQPPAKQPRT--------T 60
           ++  EMN   D +LEDL NF++ S ESY+S+ D         + PAKQP+         T
Sbjct: 21  LNQYEMNFHLDYSLEDL-NFRSLSAESYSSYPDFTPPQNDVDERPAKQPKNNHSNWNSCT 80

Query: 61  GTGTSRKIGSMGASSSSSHIISFGNSHSSCNPKL--------------SGRNID-LSSVV 120
            T   +      +SS+SSH+ISF NS+SS    L              SG N++ + +++
Sbjct: 81  TTHDHKTTVPRASSSASSHLISFDNSNSSAYGSLDCTTTVKPKNEVQGSGGNLNSIPTLI 140

Query: 121 AQPASYDDDNNNNNNNNNIPNYYCSP-RNHGVGIKRSAAAVNNNRTPLLAQDHVIAERKR 180
           +Q  SYD                CSP R +G GIKR+A      R+PL AQDHV+AERKR
Sbjct: 141 SQGNSYDPQT-------------CSPNRAYGQGIKRAATVT---RSPLHAQDHVLAERKR 200

Query: 181 REKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVN 240
           REKLSQRF+ALSAL+P LKKMDKAS+LGDAI Y+K LQER+K+  EQ AK TVESVVFV 
Sbjct: 201 REKLSQRFIALSALVPGLKKMDKASVLGDAIKYVKQLQERMKILEEQAAKKTVESVVFVK 260

Query: 241 KSSDDVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIE 300
           ++       + S D + ++   SD  +P+IEARVS K+VL+RIH +K KGCL+NIL++IE
Sbjct: 261 RTQYSADDDISSSDENFDSC--SDQPLPEIEARVSDKEVLIRIHCEKKKGCLANILHEIE 320

Query: 301 KLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           +LNLT+LNSS LPFGN  LDIT+++QMD ++SMTVKELV KLRQA L+ V
Sbjct: 321 RLNLTILNSSFLPFGNSTLDITVVSQMDVEYSMTVKELVSKLRQALLKLV 351

[Close]

BLAST of Lsi01G008440 vs. NCBI nr
Match: gi|595831834|ref|XP_007206351.1| (hypothetical protein PRUPE_ppa017640mg [Prunus persica])

HSP 1 Score: 259.2 bits (661), Expect = 9.5e-66
Identity = 174/352 (49.43%), Postives = 225/352 (63.92%), Query Frame = 1


Query: 5   EMNPFDCALEDLSNFQAFSDESYTSHVDV---------ENSVQTPAQP-----PAKQPRT 64
           EMN  D +L+DL NFQ+FS ESY+S+ +            S++TP Q      PAKQP+ 
Sbjct: 11  EMNSLDYSLDDL-NFQSFSSESYSSYPNFTPKATHNFSNASIETPQQAGTHERPAKQPKN 70

Query: 65  TGTG----TSRKIGSMGASSSSSHIISFGNSHSS---------------CNPK----LSG 124
             T     T   I +  ASSSSSH+ISF NS+SS                 PK     S 
Sbjct: 71  HTTWNPCTTDHTIMAKAASSSSSHLISFDNSNSSPPTSSQQFYGTLDNTMKPKNEVEYSN 130

Query: 125 RNIDLSSVVAQPASYDDDNNNNNNNNNIPNYYCSPRNHGVGIKRSAAAVNNNRTPLLAQD 184
             ++L+++++Q  SYD                CSP+ HG GIKR+A      R+PL AQD
Sbjct: 131 GKLNLTTLISQ-GSYDPQT-------------CSPK-HGQGIKRAATVT---RSPLHAQD 190

Query: 185 HVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKAT 244
           HV+AERKRREKLSQRF+ALSAL+P LKKMDKAS+LGDAI Y+K LQER K+  E+  K T
Sbjct: 191 HVLAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYVKHLQERTKMLEEKAVKKT 250

Query: 245 VESVVFVNKSSDDVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCL 304
           VE+VVFV ++       + S D + E+  SSD  +P+IEARVS K+VL+R+H +K KGCL
Sbjct: 251 VEAVVFVKRTQYSADDDISSSDENFES--SSDQPLPEIEARVSDKEVLIRVHCEKTKGCL 310

Query: 305 SNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQ 320
           + IL++IE L+LT++NSS LPFGN  LDIT+IAQMD +FSMTVK+LV+ LRQ
Sbjct: 311 AKILSEIESLDLTIVNSSVLPFGNSTLDITVIAQMDAEFSMTVKDLVKNLRQ 341

[Close]

BLAST of Lsi01G008440 vs. NCBI nr
Match: gi|645219682|ref|XP_008236887.1| (PREDICTED: transcription factor bHLH25-like [Prunus mume])

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 172/346 (49.71%), Postives = 223/346 (64.45%), Query Frame = 1


Query: 5   EMNPFDCALEDLSNFQAFSDESYTSH-------------VDVENSVQTPA-QPPAKQPRT 64
           EMN  D +L+DL NFQ+FS ESY+S+               +E S Q    + PAKQP+ 
Sbjct: 25  EMNSLDYSLDDL-NFQSFSSESYSSYPNFTPKATHNFNNASIETSHQAGTHERPAKQPKN 84

Query: 65  TGTG----TSRKIGSMGASSSSSHIISFGNSHSSCNPKLSGR----NIDLSSVVAQPASY 124
             T     +     +  ASSSSSH+ISF NS+SS  P  S +    N+D +        Y
Sbjct: 85  HTTWNPCTSDHTFMAKAASSSSSHLISFDNSNSS--PPTSSQQFYGNLDNTMKPKNEVEY 144

Query: 125 DDDNNNNNNNNNIPNY---YCSPRNHGVGIKRSAAAVNNNRTPLLAQDHVIAERKRREKL 184
            +   N     +  +Y    CSPR H  GIKR+A      R+PL AQDHV+AERKRREKL
Sbjct: 145 SNGKLNLTTLISQGSYDPQTCSPR-HEQGIKRAATVT---RSPLHAQDHVLAERKRREKL 204

Query: 185 SQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVANEQTAKATVESVVFVNKSSD 244
           SQRF+ALSAL+P LKKMDKAS+LGDAI Y+K LQER ++  EQ  K TVE+VVFV ++  
Sbjct: 205 SQRFIALSALVPGLKKMDKASVLGDAIKYVKHLQERTRMLEEQAVKKTVEAVVFVKRTQY 264

Query: 245 DVTTVVVSDDSSEENSLSSDGAIPDIEARVSGKDVLLRIHSKKCKGCLSNILNQIEKLNL 304
                + S D + E+   SD  +P+IEARVS K+VL+R+H +K KGCL+ IL++IE L+L
Sbjct: 265 SADDDISSSDENFESC--SDQPLPEIEARVSDKEVLIRVHCEKTKGCLAKILSEIESLDL 324

Query: 305 TVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV 326
           T++NSS LPFGN  LDIT+IAQMD +FSMTVK+LV+ LRQ+ L+FV
Sbjct: 325 TIVNSSVLPFGNSTLDITVIAQMDAEFSMTVKDLVKNLRQSLLKFV 361

The following BLAST results are available for this feature:

BLAST of Lsi01G008440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH018_ARATH	1.4e-40	49.54	Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1	[more]
BH019_ARATH	2.2e-38	48.50	Transcription factor bHLH19 OS=Arabidopsis thaliana GN=BHLH19 PE=2 SV=1	[more]
BH020_ARATH	7.8e-36	37.50	Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1	[more]
BH025_ARATH	5.6e-34	38.08	Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2	[more]
AIB_ARATH	2.2e-14	32.90	Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2...	[more]

BLAST of Lsi01G008440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG27_CUCSA	3.1e-124	78.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497110 PE=4 SV=1	[more]
M5WL55_PRUPE	6.6e-66	49.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017640mg PE=4 SV=1	[more]
A0A061DIU4_THECC	9.5e-57	45.91	Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca...	[more]
A0A0D2SIJ1_GOSRA	3.4e-54	45.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G229000 PE=4 SV=1	[more]
A0A0D2QXV7_GOSRA	3.4e-54	47.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G228900 PE=4 SV=1	[more]

BLAST of Lsi01G008440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22750.2	7.7e-42	49.54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22760.1	1.2e-39	48.50	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22770.1	4.4e-37	37.50	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G37850.1	3.1e-35	38.08	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G46510.1	1.2e-15	32.90	ABA-inducible BHLH-type transcription factor	[more]

BLAST of Lsi01G008440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451351\|ref\|XP_004143425.1\|	4.5e-124	78.79	PREDICTED: transcription factor bHLH18-like [Cucumis sativus]	[more]
gi\|659079831\|ref\|XP_008440467.1\|	1.2e-121	78.48	PREDICTED: transcription factor bHLH18-like [Cucumis melo]	[more]
gi\|764517173\|ref\|XP_011466489.1\|	1.5e-66	49.71	PREDICTED: transcription factor bHLH18-like [Fragaria vesca subsp. vesca]	[more]
gi\|595831834\|ref\|XP_007206351.1\|	9.5e-66	49.43	hypothetical protein PRUPE_ppa017640mg [Prunus persica]	[more]
gi\|645219682\|ref\|XP_008236887.1\|	1.2e-63	49.71	PREDICTED: transcription factor bHLH25-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008440.1	Lsi01G008440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 147..205 score: 3.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 147..193 score: 1.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 149..198 score: 3.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 143..192 score: 15
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 148..205 score: 1.18
None	No IPR available	unknown	Coil	Coil	coord: 189..209 scor
None	No IPR available	PANTHER	PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	coord: 5..36 score: 9.8E-93coord: 108..320 score: 9.8
None	No IPR available	PANTHER	PTHR23042:SF61	TRANSCRIPTION FACTOR BHLH18-RELATED	coord: 5..36 score: 9.8E-93coord: 108..320 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G008440	CsGy6G028930	Cucumber (Gy14) v2	cgyblsiB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G008440	Cucumber (Chinese Long) v3	cuclsiB114
Lsi01G008440	Cucumber (Chinese Long) v3	cuclsiB462
Lsi01G008440	Watermelon (97103) v2	lsiwmbB115
Lsi01G008440	Watermelon (97103) v2	lsiwmbB148
Lsi01G008440	Wax gourd	lsiwgoB180
Lsi01G008440	Bottle gourd (USVL1VR-Ls)	lsilsiB075
Lsi01G008440	Bottle gourd (USVL1VR-Ls)	lsilsiB079
Lsi01G008440	Bottle gourd (USVL1VR-Ls)	lsilsiB084
Lsi01G008440	Cucumber (Gy14) v1	cgylsiB125
Lsi01G008440	Cucumber (Gy14) v1	cgylsiB259
Lsi01G008440	Cucumber (Gy14) v1	cgylsiB502
Lsi01G008440	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G008440	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G008440	Cucurbita moschata (Rifu)	cmolsiB002
Lsi01G008440	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G008440	Cucurbita moschata (Rifu)	cmolsiB707
Lsi01G008440	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G008440	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G008440	Cucurbita pepo (Zucchini)	cpelsiB079
Lsi01G008440	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G008440	Wild cucumber (PI 183967)	cpilsiB102
Lsi01G008440	Wild cucumber (PI 183967)	cpilsiB165
Lsi01G008440	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G008440	Cucumber (Chinese Long) v2	culsiB106
Lsi01G008440	Cucumber (Chinese Long) v2	culsiB166
Lsi01G008440	Cucumber (Chinese Long) v2	culsiB434
Lsi01G008440	Melon (DHL92) v3.5.1	lsimeB136
Lsi01G008440	Melon (DHL92) v3.5.1	lsimeB143
Lsi01G008440	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G008440	Watermelon (Charleston Gray)	lsiwcgB122
Lsi01G008440	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G008440	Watermelon (97103) v1	lsiwmB144
Lsi01G008440	Watermelon (97103) v1	lsiwmB166
Lsi01G008440	Cucumber (Gy14) v2	cgyblsiB094
Lsi01G008440	Melon (DHL92) v3.6.1	lsimedB143
Lsi01G008440	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G008440	Silver-seed gourd	carlsiB001
Lsi01G008440	Silver-seed gourd	carlsiB053
Lsi01G008440	Silver-seed gourd	carlsiB364