CsGy6G020200 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G020200
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 20939299 .. 20939735 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGTAAGTAAACATAAACACCATACACACAAAATCTTCATCATACTAAACACATTATTAATCAATTTATATAATTCAGTAACAGTTTTTCTTTTTTCTTTTTAAACTCTGTTTAGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAGAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

mRNA sequence

GACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAGAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

Coding sequence (CDS)

GACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAGAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

Protein sequence

DKDVAEDRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN

Homology

[Close]

BLAST of CsGy6G020200 vs. NCBI nr
Match: KGN47772.1 (hypothetical protein Csa_6G401420 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 14  MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXX 73
           MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXX
Sbjct: 1   MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXX 60

Query: 74  VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 108
           VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN
Sbjct: 61  VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]

BLAST of CsGy6G020200 vs. NCBI nr
Match: XP_008445410.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-33
Identity = 98/109 (89.91%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   DKDVAEDRVGSLKMELLRNNNIGGRRLGAA-KEFMEMENSKSFGKNGSKEKISNMVFSSX 60
           DKD AEDRVGSLKME LRNNNIGGRRLG   KE MEMENSKSFGKNGSKEK SNMVFS X
Sbjct: 29  DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNKELMEMENSKSFGKNGSKEKTSNMVFSXX 88

Query: 61  XXXXXXXXXXXXXXVSSLETKKMGISGST-VVYNNADYLTYMHHPPKHN 108
           XXXXXXXXXXXXXX  SLETKKMGISGST VVYNNADYLTYMHHPPKHN
Sbjct: 89  XXXXXXXXXXXXXXXXSLETKKMGISGSTVVVYNNADYLTYMHHPPKHN 137

[Close]

BLAST of CsGy6G020200 vs. NCBI nr
Match: XP_008445411.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-33
Identity = 98/109 (89.91%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   DKDVAEDRVGSLKMELLRNNNIGGRRLGAA-KEFMEMENSKSFGKNGSKEKISNMVFSSX 60
           DKD AEDRVGSLKME LRNNNIGGRRLG   KE MEMENSKSFGKNGSKEK SNMVFS X
Sbjct: 28  DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNKELMEMENSKSFGKNGSKEKTSNMVFSXX 87

Query: 61  XXXXXXXXXXXXXXVSSLETKKMGISGST-VVYNNADYLTYMHHPPKHN 108
           XXXXXXXXXXXXXX  SLETKKMGISGST VVYNNADYLTYMHHPPKHN
Sbjct: 88  XXXXXXXXXXXXXXXXSLETKKMGISGSTVVVYNNADYLTYMHHPPKHN 136

[Close]

BLAST of CsGy6G020200 vs. NCBI nr
Match: XP_022951917.1 (uncharacterized protein LOC111454657 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 55/108 (50.93%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 2   KDVAE--DRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSX 61
           KDVA+  D   S + EL+ +NNIGGRR    KE M +E SKS          S M  SS 
Sbjct: 31  KDVAQARDSFASREKELV-SNNIGGRRRLEVKEGMPLERSKS----------SKMAVSSS 90

Query: 62  XXXXXXXXXXXXXXVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 108
              XXXXXXXXXXX           +GS++VY NADYLT+MHHPPKHN
Sbjct: 91  FNGXXXXXXXXXXXG----------NGSSLVYENADYLTHMHHPPKHN 117

[Close]

BLAST of CsGy6G020200 vs. NCBI nr
Match: XP_023002074.1 (uncharacterized protein LOC111496054 [Cucurbita maxima])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 43/108 (39.81%), Postives = 54/108 (50.00%), Query Frame = 0


Query: 2   KDVAE--DRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSX 61
           KDVA+  D   S + ELL +NNIGGRR    +E M +E+SKS          S M   S 
Sbjct: 31  KDVAQARDSFASHEKELL-SNNIGGRRRLEVQEGMPLESSKS----------SKMAVPSS 90

Query: 62  XXXXXXXXXXXXXXVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 108
                          +         +GS++VY NADYLT+MHHPPKHN
Sbjct: 91  FNGE-----------NGXXXXXXXXNGSSLVYENADYLTHMHHPPKHN 116

[Close]

BLAST of CsGy6G020200 vs. TrEMBL
Match: tr|A0A0A0KHA3|A0A0A0KHA3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.9e-34
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 14  MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXX 73
           MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXX
Sbjct: 1   MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXX 60

Query: 74  VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 108
           VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN
Sbjct: 61  VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]

BLAST of CsGy6G020200 vs. TrEMBL
Match: tr|A0A1S3BDI1|A0A1S3BDI1_CUCME (uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 98/109 (89.91%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   DKDVAEDRVGSLKMELLRNNNIGGRRLGAA-KEFMEMENSKSFGKNGSKEKISNMVFSSX 60
           DKD AEDRVGSLKME LRNNNIGGRRLG   KE MEMENSKSFGKNGSKEK SNMVFS X
Sbjct: 28  DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNKELMEMENSKSFGKNGSKEKTSNMVFSXX 87

Query: 61  XXXXXXXXXXXXXXVSSLETKKMGISGST-VVYNNADYLTYMHHPPKHN 108
           XXXXXXXXXXXXXX  SLETKKMGISGST VVYNNADYLTYMHHPPKHN
Sbjct: 88  XXXXXXXXXXXXXXXXSLETKKMGISGSTVVVYNNADYLTYMHHPPKHN 136

[Close]

BLAST of CsGy6G020200 vs. TrEMBL
Match: tr|A0A1S3BDD4|A0A1S3BDD4_CUCME (uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 98/109 (89.91%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   DKDVAEDRVGSLKMELLRNNNIGGRRLGAA-KEFMEMENSKSFGKNGSKEKISNMVFSSX 60
           DKD AEDRVGSLKME LRNNNIGGRRLG   KE MEMENSKSFGKNGSKEK SNMVFS X
Sbjct: 29  DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNKELMEMENSKSFGKNGSKEKTSNMVFSXX 88

Query: 61  XXXXXXXXXXXXXXVSSLETKKMGISGST-VVYNNADYLTYMHHPPKHN 108
           XXXXXXXXXXXXXX  SLETKKMGISGST VVYNNADYLTYMHHPPKHN
Sbjct: 89  XXXXXXXXXXXXXXXXSLETKKMGISGSTVVVYNNADYLTYMHHPPKHN 137

The following BLAST results are available for this feature:

BLAST of CsGy6G020200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47772.1	1.0e-33	100.00	hypothetical protein Csa_6G401420 [Cucumis sativus]	[more]
XP_008445410.1	6.8e-33	89.91	PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo]	[more]
XP_008445411.1	6.8e-33	89.91	PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo]	[more]
XP_022951917.1	7.8e-05	50.93	uncharacterized protein LOC111454657 [Cucurbita moschata]	[more]
XP_023002074.1	7.8e-05	39.81	uncharacterized protein LOC111496054 [Cucurbita maxima]	[more]

BLAST of CsGy6G020200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G020200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G020200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHA3\|A0A0A0KHA3_CUCSA	6.9e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1	[more]
tr\|A0A1S3BDI1\|A0A1S3BDI1_CUCME	4.5e-33	89.91	uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BDD4\|A0A1S3BDD4_CUCME	4.5e-33	89.91	uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G020200.1	CsGy6G020200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G020200	Cla022047	Watermelon (97103) v1	cgybwmB442
CsGy6G020200	Csa6G401420	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G020200	CSPI06G20860	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G020200	MELO3C030292.2	Melon (DHL92) v3.6.1	cgybmedB416
CsGy6G020200	CsaV3_6G035890	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G020200	Carg20569	Silver-seed gourd	carcgybB0647

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G020200	Cucurbita moschata (Rifu)	cgybcmoB830
CsGy6G020200	Cucurbita pepo (Zucchini)	cgybcpeB720
CsGy6G020200	Bottle gourd (USVL1VR-Ls)	cgyblsiB448
CsGy6G020200	Melon (DHL92) v3.5.1	cgybmeB419
CsGy6G020200	Silver-seed gourd	carcgybB0155
CsGy6G020200	Watermelon (97103) v2	cgybwmbB477
CsGy6G020200	Wax gourd	cgybwgoB554
CsGy6G020200	Wax gourd	cgybwgoB567
CsGy6G020200	Cucurbita maxima (Rimu)	cgybcmaB719
CsGy6G020200	Cucurbita maxima (Rimu)	cgybcmaB850