Carg20569 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20569
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_113 : 376907 .. 377975 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTCTCTATCCTTCATTCATTTCAATACGTAAATTTAGAAGTGGGTTTTCTTCCGTTTAGTCGAGAGTGAACTCGAATTAATTGAATTATGCTTGTAGCTCACGTTTTAATCGATTTGTTAATATAATGCTAGTTTTGTTGCACTTTATAGCCTTACATAGACTAGTAGACTATTAACGGGTTTTCTCGTAGGGTTAGGGTTACCTGTTTTCACTTCTCGAAAACGAAATTTGACTTTGTTTAAAAGCTCTATATCTTCCAATGAATACCCATATTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGACGTAGCTCAAACTCGAGGTAGTTTTGCTAAGTAATCAATATAAATCCTTTATCGTAGGACGAGGTTACCTGTTTTCACTTCTCGAAGATGAAATCTAACTTTGTTTAAGAGTTCTACCTCTTCTAATGAATACCCATGTTTTCTTTCTTTTCGTTTTAGGTTTAGAATACAAAGATGTAGCTCAAACTCGAGATAGTTTTGTTAAGTAAATCAATATAAACCCTTTTATCGTAGGGTTAGATTACCTGTTTTCACTTTTCAAAAACGAAATCTAACTTTGTTTAAGAGCTCTACCTCTTCTAATGAATACCCATGTTTTCTTTCTTTTCGTTTCAGGTTTAGAATACAAAGACGTAGTTCAAACTCGAGATAGTTTTGCTTCGCGTGAAAAGGTACGTGAATATCTACCCTAATTTGACTCGAGGATTCACGTATACCAATAATCTCGCTCCCTTTTTGTTTAGGAACTTGTGAGTAACAACATTGGAGGAAGAAGAAGATTGGAAGTGAAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTTCAAGCTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATTGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

mRNA sequence

ATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTTTAGAATACAAAGACGTAGTTCAAACTCGAGATAGTTTTGCTTCGCGTGAAAAGGAACTTGTGAGTAACAACATTGGAGGAAGAAGAAGATTGGAAGTGAAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTTCAAGCTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATTGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

Coding sequence (CDS)

ATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTTTAGAATACAAAGACGTAGTTCAAACTCGAGATAGTTTTGCTTCGCGTGAAAAGGAACTTGTGAGTAACAACATTGGAGGAAGAAGAAGATTGGAAGTGAAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTTCAAGCTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATTGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

Protein sequence

MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRRRLEVKEGMPLESSKSSKMAVSSSFNGENGKKKKKKLGNGSSLVYENADYLTHMHHPPKHN

Homology

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BLAST of Carg20569 vs. NCBI nr
Match: XP_023002074.1 (uncharacterized protein LOC111496054 [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 2.3e-47
Identity = 107/116 (92.24%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRRRLEV 60
           MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDV Q RDSFAS EKEL+SNNIGGRRRLEV
Sbjct: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEV 60

Query: 61  KEGMPLESSKSSKMAVSSSFNGENXXXXXXXLGNGSSLVYENADYLTHMHHPPKHN 117
           +EGMPLESSKSSKMAV SSFNGEN XXXXXX  NGSSLVYENADYLTHMHHPPKHN
Sbjct: 61  QEGMPLESSKSSKMAVPSSFNGENGXXXXXXXXNGSSLVYENADYLTHMHHPPKHN 116

[Close]

BLAST of Carg20569 vs. NCBI nr
Match: XP_022951917.1 (uncharacterized protein LOC111454657 [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 110/117 (94.02%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRRRLEV 60
           MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDV Q RDSFASREKELVSNNIGGRRRLEV
Sbjct: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASREKELVSNNIGGRRRLEV 60

Query: 61  KEGMPLESSKSSKMAVSSSFNG-ENXXXXXXXLGNGSSLVYENADYLTHMHHPPKHN 117
           KEGMPLE SKSSKMAVSSSFNG   XXXXXXX GNGSSLVYENADYLTHMHHPPKHN
Sbjct: 61  KEGMPLERSKSSKMAVSSSFNGXXXXXXXXXXXGNGSSLVYENADYLTHMHHPPKHN 117

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BLAST of Carg20569 vs. NCBI nr
Match: XP_008445410.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 60/139 (43.17%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRR-RLE 60
           M  VRFACFLLVVLP+TSLSI+KFH+  E KD  + R      E  L +NNIGGRR  + 
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQ-QEDKDAAEDRVGSLKME-PLRNNNIGGRRLGVL 60

Query: 61  VKEGMPLESSKS----------SKMAVS------------SSFNGENXXXXXXXLGNGSS 117
            KE M +E+SKS          S M  S                  +       +   + 
Sbjct: 61  NKELMEMENSKSFGKNGSKEKTSNMVFSXXXXXXXXXXXXXXXXXXSLETKKMGISGSTV 120

[Close]

BLAST of Carg20569 vs. NCBI nr
Match: XP_008445411.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 59/139 (42.45%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRR-RLE 60
           M  VRFACFLLVVLP+TSLSI+KFH+  + KD  + R      E  L +NNIGGRR  + 
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQ--QDKDAAEDRVGSLKME-PLRNNNIGGRRLGVL 60

Query: 61  VKEGMPLESSKS----------SKMAVS------------SSFNGENXXXXXXXLGNGSS 117
            KE M +E+SKS          S M  S                  +       +   + 
Sbjct: 61  NKELMEMENSKSFGKNGSKEKTSNMVFSXXXXXXXXXXXXXXXXXXSLETKKMGISGSTV 120

[Close]

BLAST of Carg20569 vs. NCBI nr
Match: KGN47772.1 (hypothetical protein Csa_6G401420 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 9.3e-04
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 47  LVSNNIGGRRRLEVKEGMPLESSKS----------SKMAVSSSFNGENXXXXXXXLG--- 106
           L +NNIGGRR    KE M +E+SKS          S M  SS      XXXXXXX     
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXXVSS 63

Query: 107 --------NGSSLVYENADYLTHMHHPPKHN 117
                   +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]

BLAST of Carg20569 vs. TrEMBL
Match: tr|A0A1S3BDD4|A0A1S3BDD4_CUCME (uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 60/139 (43.17%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRR-RLE 60
           M  VRFACFLLVVLP+TSLSI+KFH+  E KD  + R      E  L +NNIGGRR  + 
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQ-QEDKDAAEDRVGSLKME-PLRNNNIGGRRLGVL 60

Query: 61  VKEGMPLESSKS----------SKMAVS------------SSFNGENXXXXXXXLGNGSS 117
            KE M +E+SKS          S M  S                  +       +   + 
Sbjct: 61  NKELMEMENSKSFGKNGSKEKTSNMVFSXXXXXXXXXXXXXXXXXXSLETKKMGISGSTV 120

[Close]

BLAST of Carg20569 vs. TrEMBL
Match: tr|A0A1S3BDI1|A0A1S3BDI1_CUCME (uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 59/139 (42.45%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVVQTRDSFASREKELVSNNIGGRR-RLE 60
           M  VRFACFLLVVLP+TSLSI+KFH+  + KD  + R      E  L +NNIGGRR  + 
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQ--QDKDAAEDRVGSLKME-PLRNNNIGGRRLGVL 60

Query: 61  VKEGMPLESSKS----------SKMAVS------------SSFNGENXXXXXXXLGNGSS 117
            KE M +E+SKS          S M  S                  +       +   + 
Sbjct: 61  NKELMEMENSKSFGKNGSKEKTSNMVFSXXXXXXXXXXXXXXXXXXSLETKKMGISGSTV 120

[Close]

BLAST of Carg20569 vs. TrEMBL
Match: tr|A0A0A0KHA3|A0A0A0KHA3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 47  LVSNNIGGRRRLEVKEGMPLESSKS----------SKMAVSSSFNGENXXXXXXXLG--- 106
           L +NNIGGRR    KE M +E+SKS          S M  SS      XXXXXXX     
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSXXXXXXXXXXXXXXXVSS 63

Query: 107 --------NGSSLVYENADYLTHMHHPPKHN 117
                   +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

The following BLAST results are available for this feature:

BLAST of Carg20569 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002074.1	2.3e-47	92.24	uncharacterized protein LOC111496054 [Cucurbita maxima]	[more]
XP_022951917.1	1.2e-46	94.02	uncharacterized protein LOC111454657 [Cucurbita moschata]	[more]
XP_008445410.1	1.6e-11	43.17	PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo]	[more]
XP_008445411.1	2.1e-11	42.45	PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo]	[more]
KGN47772.1	9.3e-04	48.35	hypothetical protein Csa_6G401420 [Cucumis sativus]	[more]

BLAST of Carg20569 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20569 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20569 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDD4\|A0A1S3BDD4_CUCME	1.0e-11	43.17	uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BDI1\|A0A1S3BDI1_CUCME	1.4e-11	42.45	uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KHA3\|A0A0A0KHA3_CUCSA	6.2e-04	48.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20569-RA	Carg20569-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20569	Csa6G401420	Cucumber (Chinese Long) v2	carcuB0671
Carg20569	CSPI06G20860	Wild cucumber (PI 183967)	carcpiB0681
Carg20569	Cucsa.005210	Cucumber (Gy14) v1	carcgyB0724
Carg20569	CmaCh12G001190	Cucurbita maxima (Rimu)	carcmaB0920
Carg20569	Cp4.1LG07g01050	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20569	CsGy6G020200	Cucumber (Gy14) v2	carcgybB0647
Carg20569	MELO3C030292.2	Melon (DHL92) v3.6.1	carmedB0659
Carg20569	CsaV3_6G035890	Cucumber (Chinese Long) v3	carcucB0683

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20569	Silver-seed gourd	carcarB164
Carg20569	Cucurbita maxima (Rimu)	carcmaB0921
Carg20569	Cucurbita moschata (Rifu)	carcmoB0893
Carg20569	Cucurbita moschata (Rifu)	carcmoB0894
Carg20569	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20569	Bottle gourd (USVL1VR-Ls)	carlsiB593
Carg20569	Melon (DHL92) v3.5.1	carmeB0649
Carg20569	Watermelon (Charleston Gray)	carwcgB0633
Carg20569	Watermelon (97103) v1	carwmB0649
Carg20569	Watermelon (97103) v2	carwmbB0679
Carg20569	Wax gourd	carwgoB0764
Carg20569	Wax gourd	carwgoB0766