CmaCh12G001190 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G001190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 489451 .. 491278 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAACCCTAAAAACCCCATTTTTGTGCCACCATTTTCACTTGTGCTCAAACAATCAAAGATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTCTCTATCCTTCATTCATTTCCTTACGTAAATTTAGAAGCGGGTTTTCTTCCATTTAGTCGAGATTGAACTCGAATCAATTGAATTATGTTTGTAGCTCACGTTTGAATCGATTTGATAATATAATGCTAGTTTTGTTGCACTTTATAGCCTTACATAGACTAGTAGACTGTTAACGGGTTTTCTTGTAGGGTTAGGATTACCTGTTTTCACTCCTTGAAAACGAAATTTGACTTTGTCTAAGAGCTCTATATCTTCTAATGAATGCCCATGTTTTCTTTCTTTTCGTTTTAGGTTGAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTTTTCACTTCTCGAAGACGAAATCTAACTTTGTTTACGAGCTCTACATCTTCTAATGAACACCCATGTTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTTTTCACTTCTCGAAGACGAAATCTAACTTTGTTTACGAGCTCTACATCTTCTAATGAACACCCATGTTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTTTTCACTTCTCGAAGACGAAATCTAACTTTGTTTACGAGCTCTACATCTTCTAATGAACATCCATGTTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAATCCTTCATCGTAGGGGTTAGGTAACCTGTTTTCACTTCTCGAAGACAAAATCTAACTTTGTTTAAGAGCTCTACATCTTCTAATGAATACCCATGTTTTCTTTCTTTTCGGTTTAAGTTTAGAATACAAAGATGTAGCTCAAACTCAAGATAGTTTTGCTAAGTAAATCAATATAAATCCTTCATCGTAGGGTTAGGTAACCTGTTTTCACTTCTCGAAGACAAAATCTAACTTTGTTTAAGAGCTCTACATCTTCTAATGAATACCCATGTCTTCTTTCTTTTCGTTCTAGGTTTAGAATACAAAGACGTAGCTCAAGCCCGAGATAGTTTTGCTTCACATGAAAAGGTACGTGAATATCTACCCTAATTTGACTCGAGGATTCATGTATATCAATAATCTCGCTCGCTTTTTGTTTAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGCAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGTTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATCGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGATGGGAACTTGATGGCTTAGCTTAATGGAGT

mRNA sequence

TTTAACCCTAAAAACCCCATTTTTGTGCCACCATTTTCACTTGTGCTCAAACAATCAAAGATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTTTAGAATACAAAGACGTAGCTCAAGCCCGAGATAGTTTTGCTTCACATGAAAAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGCAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGTTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATCGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGATGGGAACTTGATGGCTTAGCTTAATGGAGT

Coding sequence (CDS)

ATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTTTAGAATACAAAGACGTAGCTCAAGCCCGAGATAGTTTTGCTTCACATGAAAAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGCAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGTTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATCGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

Protein sequence

MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEVQEGMPLESSKSSKMAVPSSFNGENGKKKKKKSGNGSSLVYENADYLTHMHHPPKHN
Homology
[Close]
BLAST of CmaCh12G001190 vs. TrEMBL
Match: A0A0A0KHA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 47  LLSNNIGGRRRLEVQEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKSG--- 106
           L +NNIGGRR    +E M +E+SKS          S M   S+ N ENGKKK KK     
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSS 63

Query: 107 --------NGSSLVYENADYLTHMHHPPKHN 117
                   +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]
BLAST of CmaCh12G001190 vs. NCBI nr
Match: gi|659089256|ref|XP_008445410.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-17
Identity = 71/139 (51.08%), Postives = 85/139 (61.15%), Query Frame = 1 

Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEV 60
           M  VRFACFLLVVLP+TSLSI+KFH+  E KD A+ R      E  L +NNIGGRR   +
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQ-EDKDAAEDRVGSLKMEP-LRNNNIGGRRLGVL 60

Query: 61  -QEGMPLESSKS----------SKMAVPSSFNGENGKKK-----------KKKSGNGSS- 117
            +E M +E+SKS          S M   S+ N ENGKKK           KK   +GS+ 
Sbjct: 61  NKELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTV 120

[Close]
BLAST of CmaCh12G001190 vs. NCBI nr
Match: gi|659089258|ref|XP_008445411.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 70/140 (50.00%), Postives = 83/140 (59.29%), Query Frame = 1 

Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEV 60
           M  VRFACFLLVVLP+TSLSI+KFH+    +D   A D   S + E L NN  G RRL V
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQ----QDKDAAEDRVGSLKMEPLRNNNIGGRRLGV 60

Query: 61  --QEGMPLESSKS----------SKMAVPSSFNGENGKKK-----------KKKSGNGSS 117
             +E M +E+SKS          S M   S+ N ENGKKK           KK   +GS+
Sbjct: 61  LNKELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGST 120

[Close]
BLAST of CmaCh12G001190 vs. NCBI nr
Match: gi|700192568|gb|KGN47772.1| (hypothetical protein Csa_6G401420 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 47  LLSNNIGGRRRLEVQEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKSG--- 106
           L +NNIGGRR    +E M +E+SKS          S M   S+ N ENGKKK KK     
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSS 63

Query: 107 --------NGSSLVYENADYLTHMHHPPKHN 117
                   +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

The following BLAST results are available for this feature:
BLAST of CmaCh12G001190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G001190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA3_CUCSA3.5e-0948.35Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1[more]
BLAST of CmaCh12G001190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G001190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089256|ref|XP_008445410.1|6.5e-1751.08PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo][more]
gi|659089258|ref|XP_008445411.1|1.1e-1650.00PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo][more]
gi|700192568|gb|KGN47772.1|5.0e-0948.35hypothetical protein Csa_6G401420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G001190.1CmaCh12G001190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G001190CSPI06G20860Wild cucumber (PI 183967)cmacpiB199
CmaCh12G001190Cp4.1LG07g01050Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G001190CsaV3_6G035890Cucumber (Chinese Long) v3cmacucB0225
CmaCh12G001190Carg20569Silver-seed gourdcarcmaB0920
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G001190Melon (DHL92) v3.6.1cmamedB171
CmaCh12G001190Silver-seed gourdcarcmaB0185
CmaCh12G001190Watermelon (97103) v2cmawmbB195
CmaCh12G001190Wax gourdcmawgoB0199
CmaCh12G001190Cucurbita maxima (Rimu)cmacmaB192
CmaCh12G001190Cucumber (Gy14) v1cgycmaB0094
CmaCh12G001190Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G001190Cucurbita moschata (Rifu)cmacmoB192
CmaCh12G001190Cucumber (Chinese Long) v2cmacuB196
CmaCh12G001190Melon (DHL92) v3.5.1cmameB157
CmaCh12G001190Watermelon (Charleston Gray)cmawcgB170
CmaCh12G001190Watermelon (97103) v1cmawmB149
CmaCh12G001190Cucurbita pepo (Zucchini)cmacpeB172
CmaCh12G001190Bottle gourd (USVL1VR-Ls)cmalsiB185
CmaCh12G001190Cucumber (Gy14) v2cgybcmaB719