CmaCh12G001190.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G001190.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 489451 .. 491278 (-)
Sequence length441
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAACCCTAAAAACCCCATTTTTGTGCCACCATTTTCACTTGTGCTCAAACAATCAAAGATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTCTCTATCCTTCATTCATTTCCTTACGTAAATTTAGAAGCGGGTTTTCTTCCATTTAGTCGAGATTGAACTCGAATCAATTGAATTATGTTTGTAGCTCACGTTTGAATCGATTTGATAATATAATGCTAGTTTTGTTGCACTTTATAGCCTTACATAGACTAGTAGACTGTTAACGGGTTTTCTTGTAGGGTTAGGATTACCTGTTTTCACTCCTTGAAAACGAAATTTGACTTTGTCTAAGAGCTCTATATCTTCTAATGAATGCCCATGTTTTCTTTCTTTTCGTTTTAGGTTGAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTTTTCACTTCTCGAAGACGAAATCTAACTTTGTTTACGAGCTCTACATCTTCTAATGAACACCCATGTTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTTTTCACTTCTCGAAGACGAAATCTAACTTTGTTTACGAGCTCTACATCTTCTAATGAACACCCATGTTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAACCCTTTTTATCGTAGGGTTAGGTTACCTGTTTTCACTTCTCGAAGACGAAATCTAACTTTGTTTACGAGCTCTACATCTTCTAATGAACATCCATGTTTTCTTTCTTTTCGGTTTAGGTTTAGAATACAAAGATGTACCTCAAACTCGAGATAGTTTTATTAAGTAAATCAATATAAATCCTTCATCGTAGGGGTTAGGTAACCTGTTTTCACTTCTCGAAGACAAAATCTAACTTTGTTTAAGAGCTCTACATCTTCTAATGAATACCCATGTTTTCTTTCTTTTCGGTTTAAGTTTAGAATACAAAGATGTAGCTCAAACTCAAGATAGTTTTGCTAAGTAAATCAATATAAATCCTTCATCGTAGGGTTAGGTAACCTGTTTTCACTTCTCGAAGACAAAATCTAACTTTGTTTAAGAGCTCTACATCTTCTAATGAATACCCATGTCTTCTTTCTTTTCGTTCTAGGTTTAGAATACAAAGACGTAGCTCAAGCCCGAGATAGTTTTGCTTCACATGAAAAGGTACGTGAATATCTACCCTAATTTGACTCGAGGATTCATGTATATCAATAATCTCGCTCGCTTTTTGTTTAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGCAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGTTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATCGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGATGGGAACTTGATGGCTTAGCTTAATGGAGT

mRNA sequence

TTTAACCCTAAAAACCCCATTTTTGTGCCACCATTTTCACTTGTGCTCAAACAATCAAAGATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTTTAGAATACAAAGACGTAGCTCAAGCCCGAGATAGTTTTGCTTCACATGAAAAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGCAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGTTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATCGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGATGGGAACTTGATGGCTTAGCTTAATGGAGT

Coding sequence (CDS)

ATGGGTTTTGTTAGGTTTGCTTGCTTTTTGCTGGTTGTTCTTCCAATTACATCACTTTCCATCATGAAGTTTCATCGAGGTTTAGAATACAAAGACGTAGCTCAAGCCCGAGATAGTTTTGCTTCACATGAAAAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGCAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGTTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAATCGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

Protein sequence

MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEVQEGMPLESSKSSKMAVPSSFNGENGKKKKKKSGNGSSLVYENADYLTHMHHPPKHN
Homology
[Close]
BLAST of CmaCh12G001190.1 vs. TrEMBL
Match: A0A0A0KHA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 47  LLSNNIGGRRRLEVQEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKSG--- 106
           L +NNIGGRR    +E M +E+SKS          S M   S+ N ENGKKK KK     
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSS 63

Query: 107 --------NGSSLVYENADYLTHMHHPPKHN 117
                   +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]
BLAST of CmaCh12G001190.1 vs. NCBI nr
Match: gi|659089256|ref|XP_008445410.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-17
Identity = 71/139 (51.08%), Postives = 85/139 (61.15%), Query Frame = 1 

Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEV 60
           M  VRFACFLLVVLP+TSLSI+KFH+  E KD A+ R      E  L +NNIGGRR   +
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQ-EDKDAAEDRVGSLKMEP-LRNNNIGGRRLGVL 60

Query: 61  -QEGMPLESSKS----------SKMAVPSSFNGENGKKK-----------KKKSGNGSS- 117
            +E M +E+SKS          S M   S+ N ENGKKK           KK   +GS+ 
Sbjct: 61  NKELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTV 120

[Close]
BLAST of CmaCh12G001190.1 vs. NCBI nr
Match: gi|659089258|ref|XP_008445411.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 70/140 (50.00%), Postives = 83/140 (59.29%), Query Frame = 1 

Query: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLEV 60
           M  VRFACFLLVVLP+TSLSI+KFH+    +D   A D   S + E L NN  G RRL V
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQ----QDKDAAEDRVGSLKMEPLRNNNIGGRRLGV 60

Query: 61  --QEGMPLESSKS----------SKMAVPSSFNGENGKKK-----------KKKSGNGSS 117
             +E M +E+SKS          S M   S+ N ENGKKK           KK   +GS+
Sbjct: 61  LNKELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGST 120

[Close]
BLAST of CmaCh12G001190.1 vs. NCBI nr
Match: gi|700192568|gb|KGN47772.1| (hypothetical protein Csa_6G401420 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 47  LLSNNIGGRRRLEVQEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKSG--- 106
           L +NNIGGRR    +E M +E+SKS          S M   S+ N ENGKKK KK     
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSS 63

Query: 107 --------NGSSLVYENADYLTHMHHPPKHN 117
                   +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

The following BLAST results are available for this feature:
BLAST of CmaCh12G001190.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G001190.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA3_CUCSA3.5e-0948.35Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1[more]
BLAST of CmaCh12G001190.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G001190.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089256|ref|XP_008445410.1|6.5e-1751.08PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo][more]
gi|659089258|ref|XP_008445411.1|1.1e-1650.00PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo][more]
gi|700192568|gb|KGN47772.1|5.0e-0948.35hypothetical protein Csa_6G401420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh12G001190CmaCh12G001190gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh12G001190.1CmaCh12G001190.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G001190.1.three_prime_UTR.1CmaCh12G001190.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G001190.1.CDS.3CmaCh12G001190.1.CDS.3CDS
CmaCh12G001190.1.CDS.2CmaCh12G001190.1.CDS.2CDS
CmaCh12G001190.1.CDS.1CmaCh12G001190.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G001190.1.five_prime_UTR.1CmaCh12G001190.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G001190.1.exon.3CmaCh12G001190.1.exon.3exon
CmaCh12G001190.1.exon.2CmaCh12G001190.1.exon.2exon
CmaCh12G001190.1.exon.1CmaCh12G001190.1.exon.1exon