Cla022047 (gene) Watermelon (97103) v1

Overview
NameCla022047
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 19861531 .. 19861746 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGGAAAATAGCAAAAGCTTGGGAGGTGGGTCTCAAGAGAAGATTTCAAAGATGGCTTTTTCAAGTTCTTCCAATGGACAAATTAGTGGCAAAAACAATAAGAAGATTTCAAGTTTAGAAAGAAAGAAATTGGGGAGTGGGTCAACAGTAGTTGTTTATAATAATGCTGATTATTTGAGTTATATGCATCACCCACCAAAACATAACTGA

mRNA sequence

ATGGAATTGGAAAATAGCAAAAGCTTGGGAGGTGGGTCTCAAGAGAAGATTTCAAAGATGGCTTTTTCAAGTTCTTCCAATGGACAAATTAGTGGCAAAAACAATAAGAAGATTTCAAGTTTAGAAAGAAAGAAATTGGGGAGTGGGTCAACAGTAGTTGTTTATAATAATGCTGATTATTTGAGTTATATGCATCACCCACCAAAACATAACTGA

Coding sequence (CDS)

ATGGAATTGGAAAATAGCAAAAGCTTGGGAGGTGGGTCTCAAGAGAAGATTTCAAAGATGGCTTTTTCAAGTTCTTCCAATGGACAAATTAGTGGCAAAAACAATAAGAAGATTTCAAGTTTAGAAAGAAAGAAATTGGGGAGTGGGTCAACAGTAGTTGTTTATAATAATGCTGATTATTTGAGTTATATGCATCACCCACCAAAACATAACTGA

Protein sequence

MELENSKSLGGGSQEKISKMAFSSSSNGQISGKNNKKISSLERKKLGSGSTVVVYNNADYLSYMHHPPKHN
Homology
[Close]
BLAST of Cla022047 vs. TrEMBL
Match: A0A0A0KHA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MELENSKSLG-GGSQEKISKMAFSSSSNGQISGKNNKK--ISSLERKKLGSGSTVVVYNN 60
          ME+ENSKS G  GS+EKIS M FSS+SN +   K NKK  +SSLE KK+G   + VVYNN
Sbjct: 21 MEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNN 80

Query: 61 ADYLSYMHHPPKHN 72
          ADYL+YMHHPPKHN
Sbjct: 81 ADYLTYMHHPPKHN 94

[Close]
BLAST of Cla022047 vs. NCBI nr
Match: gi|659089256|ref|XP_008445410.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 1 

Query: 1   MELENSKSLG-GGSQEKISKMAFSSSSNGQISGKNN--KKISSLERKKLG-SGSTVVVYN 60
           ME+ENSKS G  GS+EK S M FSS++N +   K N  KK+SSLE KK+G SGSTVVVYN
Sbjct: 63  MEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVVYN 122

Query: 61  NADYLSYMHHPPKHN 72
           NADYL+YMHHPPKHN
Sbjct: 123 NADYLTYMHHPPKHN 137

[Close]
BLAST of Cla022047 vs. NCBI nr
Match: gi|659089258|ref|XP_008445411.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 1 

Query: 1   MELENSKSLG-GGSQEKISKMAFSSSSNGQISGKNN--KKISSLERKKLG-SGSTVVVYN 60
           ME+ENSKS G  GS+EK S M FSS++N +   K N  KK+SSLE KK+G SGSTVVVYN
Sbjct: 62  MEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVVYN 121

Query: 61  NADYLSYMHHPPKHN 72
           NADYL+YMHHPPKHN
Sbjct: 122 NADYLTYMHHPPKHN 136

[Close]
BLAST of Cla022047 vs. NCBI nr
Match: gi|700192568|gb|KGN47772.1| (hypothetical protein Csa_6G401420 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MELENSKSLG-GGSQEKISKMAFSSSSNGQISGKNNKK--ISSLERKKLGSGSTVVVYNN 60
          ME+ENSKS G  GS+EKIS M FSS+SN +   K NKK  +SSLE KK+G   + VVYNN
Sbjct: 21 MEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNN 80

Query: 61 ADYLSYMHHPPKHN 72
          ADYL+YMHHPPKHN
Sbjct: 81 ADYLTYMHHPPKHN 94

The following BLAST results are available for this feature:
BLAST of Cla022047 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA3_CUCSA1.6e-1766.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1[more]
BLAST of Cla022047 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089256|ref|XP_008445410.1|8.0e-1869.33PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo][more]
gi|659089258|ref|XP_008445411.1|8.0e-1869.33PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo][more]
gi|700192568|gb|KGN47772.1|2.3e-1766.22hypothetical protein Csa_6G401420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022047Cla022047.1mRNA