CsGy5G000480 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G000480
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr5 : 272761 .. 273324 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAAGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGTTCTTATATGTTTTTAAGAACATACCATTTTTTTTCATTTCATATACCATGTAGGGAGTCATTGATGGATACAATCTGAAAAGGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAATGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCACGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCTCAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

mRNA sequence

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAAGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAATGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCACGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCTCAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Coding sequence (CDS)

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAAGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAATGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCACGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCTCAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Protein sequence

MARENFVEEIRQDLKEGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFEIKMILISFQVNAEVCNKCFRTMLLANKDNEPDTEQLRRYPSTTLDGKHQKHPPNCVVTKTKENRKIMGFEKLKYFVYVYGHEAMINLSEQTSVLNQTFQ
Homology
[Close]
BLAST of CsGy5G000480 vs. NCBI nr
Match: KGN49869.1 (hypothetical protein Csa_5G139470 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 8.1e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLKEGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDL+EGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTMLLANKDNEPDTEQLRRYPSTTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRT+LLANKDNEPDTEQLRRYPS TLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKLKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEK KYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

[Close]
BLAST of CsGy5G000480 vs. TrEMBL
Match: tr|A0A0A0KLX7|A0A0A0KLX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 5.4e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLKEGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDL+EGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTMLLANKDNEPDTEQLRRYPSTTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRT+LLANKDNEPDTEQLRRYPS TLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKLKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEK KYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

The following BLAST results are available for this feature:
BLAST of CsGy5G000480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49869.18.1e-8397.48hypothetical protein Csa_5G139470 [Cucumis sativus][more]
BLAST of CsGy5G000480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G000480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G000480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLX7|A0A0A0KLX7_CUCSA5.4e-8397.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G000480.1CsGy5G000480.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G000480Csa5G139470Cucumber (Chinese Long) v2cgybcuB224
CsGy5G000480CSPI05G03220Wild cucumber (PI 183967)cgybcpiB226
CsGy5G000480CsaV3_5G000550Cucumber (Chinese Long) v3cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G000480Watermelon (97103) v2cgybwmbB319
CsGy5G000480Watermelon (97103) v2cgybwmbB364
CsGy5G000480Watermelon (97103) v2cgybwmbB366
CsGy5G000480Wax gourdcgybwgoB430
CsGy5G000480Wax gourdcgybwgoB457
CsGy5G000480Cucumber (Gy14) v2cgybcgybB085
CsGy5G000480Cucurbita maxima (Rimu)cgybcmaB602
CsGy5G000480Cucurbita maxima (Rimu)cgybcmaB597
CsGy5G000480Cucurbita maxima (Rimu)cgybcmaB628
CsGy5G000480Cucurbita maxima (Rimu)cgybcmaB618
CsGy5G000480Cucurbita maxima (Rimu)cgybcmaB639
CsGy5G000480Cucurbita maxima (Rimu)cgybcmaB644
CsGy5G000480Cucurbita moschata (Rifu)cgybcmoB568
CsGy5G000480Cucurbita moschata (Rifu)cgybcmoB575
CsGy5G000480Cucurbita moschata (Rifu)cgybcmoB594
CsGy5G000480Cucurbita moschata (Rifu)cgybcmoB607
CsGy5G000480Cucurbita moschata (Rifu)cgybcmoB618
CsGy5G000480Cucurbita pepo (Zucchini)cgybcpeB583
CsGy5G000480Cucurbita pepo (Zucchini)cgybcpeB610
CsGy5G000480Cucurbita pepo (Zucchini)cgybcpeB617
CsGy5G000480Cucurbita pepo (Zucchini)cgybcpeB678
CsGy5G000480Cucurbita pepo (Zucchini)cgybcpeB686
CsGy5G000480Cucurbita pepo (Zucchini)cgybcpeB704
CsGy5G000480Cucumber (Chinese Long) v2cgybcuB206
CsGy5G000480Bottle gourd (USVL1VR-Ls)cgyblsiB294
CsGy5G000480Bottle gourd (USVL1VR-Ls)cgyblsiB343
CsGy5G000480Bottle gourd (USVL1VR-Ls)cgyblsiB345
CsGy5G000480Melon (DHL92) v3.5.1cgybmeB298
CsGy5G000480Melon (DHL92) v3.5.1cgybmeB349
CsGy5G000480Melon (DHL92) v3.5.1cgybmeB354
CsGy5G000480Melon (DHL92) v3.6.1cgybmedB298
CsGy5G000480Melon (DHL92) v3.6.1cgybmedB349
CsGy5G000480Melon (DHL92) v3.6.1cgybmedB356
CsGy5G000480Watermelon (Charleston Gray)cgybwcgB332
CsGy5G000480Watermelon (Charleston Gray)cgybwcgB357
CsGy5G000480Watermelon (Charleston Gray)cgybwcgB361
CsGy5G000480Watermelon (97103) v1cgybwmB379
CsGy5G000480Watermelon (97103) v1cgybwmB381
CsGy5G000480Watermelon (97103) v1cgybwmB373
CsGy5G000480Wild cucumber (PI 183967)cgybcpiB208
CsGy5G000480Silver-seed gourdcarcgybB0313
CsGy5G000480Silver-seed gourdcarcgybB0513
CsGy5G000480Silver-seed gourdcarcgybB0546
CsGy5G000480Silver-seed gourdcarcgybB0978
CsGy5G000480Cucumber (Chinese Long) v3cgybcucB211