CsGy5G000480.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy5G000480.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr5 : 272761 .. 273324 (+)
Sequence length480
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAAGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGTTCTTATATGTTTTTAAGAACATACCATTTTTTTTCATTTCATATACCATGTAGGGAGTCATTGATGGATACAATCTGAAAAGGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAATGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCACGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCTCAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

mRNA sequence

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAAGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAATGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCACGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCTCAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Coding sequence (CDS)

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAAGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAATGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCACGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCTCAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Protein sequence

MARENFVEEIRQDLKEGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFEIKMILISFQVNAEVCNKCFRTMLLANKDNEPDTEQLRRYPSTTLDGKHQKHPPNCVVTKTKENRKIMGFEKLKYFVYVYGHEAMINLSEQTSVLNQTFQ
Homology
[Close]
BLAST of CsGy5G000480.1 vs. NCBI nr
Match: KGN49869.1 (hypothetical protein Csa_5G139470 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 8.1e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLKEGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDL+EGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTMLLANKDNEPDTEQLRRYPSTTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRT+LLANKDNEPDTEQLRRYPS TLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKLKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEK KYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

[Close]
BLAST of CsGy5G000480.1 vs. TrEMBL
Match: tr|A0A0A0KLX7|A0A0A0KLX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 5.4e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLKEGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDL+EGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTMLLANKDNEPDTEQLRRYPSTTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRT+LLANKDNEPDTEQLRRYPS TLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKLKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEK KYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

The following BLAST results are available for this feature:
BLAST of CsGy5G000480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49869.18.1e-8397.48hypothetical protein Csa_5G139470 [Cucumis sativus][more]
BLAST of CsGy5G000480.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G000480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G000480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLX7|A0A0A0KLX7_CUCSA5.4e-8397.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy5G000480CsGy5G000480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy5G000480.1.exon.1CsGy5G000480.1.exon.1exon
CsGy5G000480.1.exon.2CsGy5G000480.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy5G000480.1.CDS.1CsGy5G000480.1.CDS.1CDS
CsGy5G000480.1.CDS.2CsGy5G000480.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy5G000480.1CsGy5G000480.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..33