CsaV3_5G000550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G000550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 278758 .. 279547 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAGGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGTTCTTATATGTTCTTAAGAACATACCATTCTTTTTTCATTTCATATACCATGTACGGAGTCATTGATGGATACAATCTGAAAAGGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAGTGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCATGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCACAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAGCATATTACTGTATCAGTTTTTTTTTTGGATTCCTATTTTTTAGAAACAGAAGCATTTGGTATCTGTTTTTCTTTCTTTTCTTGTTTCTCATTTTTCAGAAATGTTTTCAAAGTTGGGTAGAAATTTTGGAAACAACAAAACCAAGTTTCTTGAATCAGGTTTATGTTTTCATTTGTTTTTCAAAATAAAAAGTAAAAGTATTATTTTATTATTATTTACCTTTAA

mRNA sequence

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAGGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAGTGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCATGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCACAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Coding sequence (CDS)

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAGGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAGTGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCATGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCACAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Protein sequence

MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFEIKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKTKENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ
Homology
[Close]
BLAST of CsaV3_5G000550 vs. NCBI nr
Match: KGN49869.1 (hypothetical protein Csa_5G139470 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 1.0e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

[Close]
BLAST of CsaV3_5G000550 vs. TrEMBL
Match: tr|A0A0A0KLX7|A0A0A0KLX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 6.8e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

The following BLAST results are available for this feature:
BLAST of CsaV3_5G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49869.11.0e-85100.00hypothetical protein Csa_5G139470 [Cucumis sativus][more]
BLAST of CsaV3_5G000550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLX7|A0A0A0KLX7_CUCSA6.8e-86100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G000550.1CsaV3_5G000550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G000550CSPI05G03220Wild cucumber (PI 183967)cpicucB285
CsaV3_5G000550CsGy5G000480Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G000550Cucumber (Chinese Long) v3cuccucB119
CsaV3_5G000550Silver-seed gourdcarcucB0333
CsaV3_5G000550Silver-seed gourdcarcucB0541
CsaV3_5G000550Silver-seed gourdcarcucB0577
CsaV3_5G000550Silver-seed gourdcarcucB1035
CsaV3_5G000550Cucumber (Gy14) v2cgybcucB130
CsaV3_5G000550Cucumber (Gy14) v1cgycucB327
CsaV3_5G000550Cucumber (Gy14) v1cgycucB393
CsaV3_5G000550Cucurbita maxima (Rimu)cmacucB0305
CsaV3_5G000550Cucurbita maxima (Rimu)cmacucB0342
CsaV3_5G000550Cucurbita maxima (Rimu)cmacucB0402
CsaV3_5G000550Cucurbita maxima (Rimu)cmacucB0500
CsaV3_5G000550Cucurbita maxima (Rimu)cmacucB0735
CsaV3_5G000550Cucurbita moschata (Rifu)cmocucB0296
CsaV3_5G000550Cucurbita moschata (Rifu)cmocucB0338
CsaV3_5G000550Cucurbita moschata (Rifu)cmocucB0398
CsaV3_5G000550Cucurbita moschata (Rifu)cmocucB0490
CsaV3_5G000550Cucurbita moschata (Rifu)cmocucB0723
CsaV3_5G000550Cucurbita moschata (Rifu)cmocucB0976
CsaV3_5G000550Cucurbita pepo (Zucchini)cpecucB0046
CsaV3_5G000550Cucurbita pepo (Zucchini)cpecucB0226
CsaV3_5G000550Cucurbita pepo (Zucchini)cpecucB0275
CsaV3_5G000550Cucurbita pepo (Zucchini)cpecucB0774
CsaV3_5G000550Cucurbita pepo (Zucchini)cpecucB0910
CsaV3_5G000550Cucurbita pepo (Zucchini)cpecucB1071
CsaV3_5G000550Wild cucumber (PI 183967)cpicucB163
CsaV3_5G000550Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G000550Bottle gourd (USVL1VR-Ls)cuclsiB401
CsaV3_5G000550Bottle gourd (USVL1VR-Ls)cuclsiB402
CsaV3_5G000550Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G000550Melon (DHL92) v3.5.1cucmeB411
CsaV3_5G000550Melon (DHL92) v3.5.1cucmeB416
CsaV3_5G000550Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G000550Melon (DHL92) v3.6.1cucmedB404
CsaV3_5G000550Melon (DHL92) v3.6.1cucmedB410
CsaV3_5G000550Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G000550Watermelon (Charleston Gray)cucwcgB413
CsaV3_5G000550Watermelon (Charleston Gray)cucwcgB417
CsaV3_5G000550Watermelon (97103) v1cucwmB423
CsaV3_5G000550Watermelon (97103) v1cucwmB433
CsaV3_5G000550Watermelon (97103) v1cucwmB430
CsaV3_5G000550Watermelon (97103) v2cucwmbB351
CsaV3_5G000550Watermelon (97103) v2cucwmbB395
CsaV3_5G000550Watermelon (97103) v2cucwmbB399
CsaV3_5G000550Wax gourdcucwgoB464
CsaV3_5G000550Wax gourdcucwgoB493