CsGy4G021670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G021670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	PRA1 family protein
Location	Chr4 : 28270160 .. 28273262 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTATCTTTCATCATTAATGGAACCATCCATATAAAAGTATTAAAAGATATCAAAACATAGACCTTAAACAATTTGTTGTTTCAACCTTTTCAAATCCACCAATGTAGTTAATCAATCAACGTCTTCAGAATTGGATGTTGAATAGTTCAATTTGTTCTAATTTTATAAAGAGAACACTGAGTTAGTCTTTGTCTTGTGATGCTTCATTAATACTAACACTTCTCTATGTCAGTCGTCTAGTTCTATATTGCAATGGAATAAAGAAAAAAAACTTTTTTGGGTCAAAAGAACCCAATTTCCCGGAGTCCGGGGCCCGCCGGGATCGTTAACGGTGGCGTTGATGATTTGATTGGCGAGAAGGAGGATAAAGCGATGTACCCACCTTCACCTCTACAACAAAACAAACGCAACAATCTCAAATCAACAATCTTCAACCACAAGGCAATTACATTCAGCCTTTTTATATAACCCTTTTGTCTCTTTTGATTCTGAATTCGTTTTTGTTGTGTTGTGGCGATTAGGAATGAGTTTCTCATCCAACCCACTTTCCCTCAGCGTTCCGGACGCCGCTTTCGATTCATGGCTTCGTGATTCCGGTTACCTTGAAATTCTCGATCAGCGGACCTCTGACCTCCACCGCCATTCCTCTGCCGCTCCCCCCGCCAGACCCACCCCTACCGCTGCAGCTCCTTTAGCCACAGGTTTCTTCATCTCCCTCTTCTCTCGCATCGCGACCCTTCTCTCCATTTTTACTCTTAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTTCTGGCCCGACCCCTTCCTGGACTACTGGGTTTCTTGGGTTTTTTGAGTCCTACTCATTTCCTTCGTCGCCGGCTCAAGCTCGTCTTAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCTTCACTATTTGTTCTCTTCTTTGTCTGCACGCTGTATGTTCTTCTCTTTCTCCTGTTAATTATGTCTATTGATGGGCTGTGTGCTGCGGATTCTGGTCTTGACGTTGAAATTGTTGTCTTTCCTGTGGGTTGCGAATTGGGTTCTGTTTGGTTTTACTTGGTGGGAATGGGAAGAGTACAAGTACAAGCTATGAAAACATCGATTTGTTAAAGCGTTTTGATTAAGATATGATCATGGGTTTAGTGATTTGGTTTGATTTTTTAAGCTCGTGGGGCTTAAGACTTTTGCAGCCTAATCGATTGCTGATCCCAATGTGAAACATATAGAAAGAATGGCTTGCATTCTTTTTGTGGATTTTAGTGGTTTGACTGAACAGGGAACCACTGTCACTGTTGTTGGTCATTAAACTAGAACACCACTCTATTACTAGTTTATATATTCATGTTCCTTTCTTTGGGATGAATGAGCGTTTGCATGGAGTGAACATAAAAAATGTTGGCTAGAGATTTATGACCTTTATTTTACCAATTTCTTGTTTCTTAACTTTAAATTCTCATGTGGATGATTGCAGATACCAGATGCCTCTTGCCCTCCTTGGACTGATATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTTGTGATAGGTGGGGATTAGACAAATATCCAGTTCTTTGGCAGTGTTTGGTTCGCATTGCTCAATGCGGTATGTTACTGACGTTTTAAAACCGTGTTTATTTACATACCTGAGAGGTTCCTCCCAATTGTTTCCTTTAAACATGTATTAATTAATTGGTATTCTGTTTCATTGTTGCATTTTCACATAGAGAATTTCAGTTGAAAATAGATATCCGTAGAGATACAGATTACTATAGTATAGATCATCAGTATAGATGTAGAGTTTAGATCTCAAATTGAAAGCATACCAAGATTACTAGTTACTGCTTGTTGAATGGTTATTGTTTTGCCTGTTCCTTTTGGTTAAAGATTTCAAGCCTCAAGGCTATTGTTTTCTCAATTTGAGATGACCATCGATTGAAAACTTTAGCACAGTTGTTCCTTAGTTCTTGAAATGGAGCCAAGCTAATGAGTTGGCCAAATGTGTAGCAAAGCATAATTTCTGCCTGTTTGATGCTGGAAAAGTTTTACTTTGTACTTCAAATGGCATTTGGAATCCTTGGAATTTTTTCAAAACCCTTCTTTTTGATACAGCTTTGTGGGATTGTTGGACTTTAAAATTCGGATCCTGCTGTAGTGCTGTATGCTTTTATTCGTTGTTTTCATGTAAATTACCATCCGTGAGTTCACAATTGTTCGGACTGCTATTGTTATTTAATTACGTAGCATCTTAAATACTTGACAAGTATAATGTTTTGCAGCGACTGTTATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCCCTTGGCATTGGATATACAGGTAACTTCAGAATTCTAGGCCATGTTATAGAGTTCATTATTATCAGTTGTTCTTATCACCTTTGAAATCTTGGCAGGTATGATTTTGCATGCTGCATTTCGGAAGCTGACTCCCACCAAGCCCACATCTACCGTAAGTCGGAAATAGACAGTTACAGGCAATGGTATTTGTCCTCCTATATATAAGTTAAGCCTAATGCAAGGTACCAACATCTGATTCTGTTGAAGACGAAAAGTTCTAGTAATGCTGATCGCAAACTTGAAAGCATGACTGATGTACGTCAGCAGGCACCGTGCCCTTGCTTGAAAATTCATATTACGGTGTGGGGCACGGTGACCATCGTATTGCCCAAGAGTTTCATCTTCCTCTGTTAAAGGCTAGAACCAAGAAACAAGTCAAGCTCAAATCTCGTTTAATTTGTTTGTTCATTAGTTAATGAAAATTAAGTATGGTTAATTTTGTAGGTCATAACACTACTACATGATATTTAGTTCCAGCTTATGACTTGTACCACAAATGTAGCATTTTGTGCTTACTTTTCTATGAACGAGAGTTTATCAGATTTCAGGTGAAGTACAGAAAGCTCTAATTTTTCTTGTCTAACAATAAGAAGCCTGCATCTCAATCCTTATACTTTCGATAAATGATGTAATTGAAAACATCAGTTTCTGTTCAGTTATGCACCTTTTTATTAAAGATGGCTTAAGGTTAAGCAAGAAGGATTTGCT

mRNA sequence

CTTTTATCTTTCATCATTAATGGAACCATCCATATAAAAGTATTAAAAGATATCAAAACATAGACCTTAAACAATTTGTTGTTTCAACCTTTTCAAATCCACCAATGTAGTTAATCAATCAACGTCTTCAGAATTGGATGTTGAATAGTTCAATTTGTTCTAATTTTATAAAGAGAACACTGAGTTAGTCTTTGTCTTGTGATGCTTCATTAATACTAACACTTCTCTATGTCAGTCGTCTAGTTCTATATTGCAATGGAATAAAGAAAAAAAACTTTTTTGGGTCAAAAGAACCCAATTTCCCGGAGTCCGGGGCCCGCCGGGATCGTTAACGGTGGCGTTGATGATTTGATTGGCGAGAAGGAGGATAAAGCGATGTACCCACCTTCACCTCTACAACAAAACAAACGCAACAATCTCAAATCAACAATCTTCAACCACAAGGAATGAGTTTCTCATCCAACCCACTTTCCCTCAGCGTTCCGGACGCCGCTTTCGATTCATGGCTTCGTGATTCCGGTTACCTTGAAATTCTCGATCAGCGGACCTCTGACCTCCACCGCCATTCCTCTGCCGCTCCCCCCGCCAGACCCACCCCTACCGCTGCAGCTCCTTTAGCCACAGGTTTCTTCATCTCCCTCTTCTCTCGCATCGCGACCCTTCTCTCCATTTTTACTCTTAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTTCTGGCCCGACCCCTTCCTGGACTACTGGGTTTCTTGGGTTTTTTGAGTCCTACTCATTTCCTTCGTCGCCGGCTCAAGCTCGTCTTAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCTTCACTATTTGTTCTCTTCTTTGTCTGCACGCTATACCAGATGCCTCTTGCCCTCCTTGGACTGATATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTTGTGATAGGTGGGGATTAGACAAATATCCAGTTCTTTGGCAGTGTTTGGTTCGCATTGCTCAATGCGCGACTGTTATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCCCTTGGCATTGGATATACAGGTATGATTTTGCATGCTGCATTTCGGAAGCTGACTCCCACCAAGCCCACATCTACCGTAAGTCGGAAATAGACAGTTACAGGCAATGGTATTTGTCCTCCTATATATAAGTTAAGCCTAATGCAAGGTACCAACATCTGATTCTGTTGAAGACGAAAAGTTCTAGTAATGCTGATCGCAAACTTGAAAGCATGACTGATGTACGTCAGCAGGCACCGTGCCCTTGCTTGAAAATTCATATTACGGTGTGGGGCACGGTGACCATCGTATTGCCCAAGAGTTTCATCTTCCTCTGTTAAAGGCTAGAACCAAGAAACAAGTCAAGCTCAAATCTCGTTTAATTTGTTTGTTCATTAGTTAATGAAAATTAAGTATGGTTAATTTTGTAGGTCATAACACTACTACATGATATTTAGTTCCAGCTTATGACTTGTACCACAAATGTAGCATTTTGTGCTTACTTTTCTATGAACGAGAGTTTATCAGATTTCAGGTGAAGTACAGAAAGCTCTAATTTTTCTTGTCTAACAATAAGAAGCCTGCATCTCAATCCTTATACTTTCGATAAATGATGTAATTGAAAACATCAGTTTCTGTTCAGTTATGCACCTTTTTATTAAAGATGGCTTAAGGTTAAGCAAGAAGGATTTGCT

Coding sequence (CDS)

ATGAGTTTCTCATCCAACCCACTTTCCCTCAGCGTTCCGGACGCCGCTTTCGATTCATGGCTTCGTGATTCCGGTTACCTTGAAATTCTCGATCAGCGGACCTCTGACCTCCACCGCCATTCCTCTGCCGCTCCCCCCGCCAGACCCACCCCTACCGCTGCAGCTCCTTTAGCCACAGGTTTCTTCATCTCCCTCTTCTCTCGCATCGCGACCCTTCTCTCCATTTTTACTCTTAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTTCTGGCCCGACCCCTTCCTGGACTACTGGGTTTCTTGGGTTTTTTGAGTCCTACTCATTTCCTTCGTCGCCGGCTCAAGCTCGTCTTAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCTTCACTATTTGTTCTCTTCTTTGTCTGCACGCTATACCAGATGCCTCTTGCCCTCCTTGGACTGATATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTTGTGATAGGTGGGGATTAGACAAATATCCAGTTCTTTGGCAGTGTTTGGTTCGCATTGCTCAATGCGCGACTGTTATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCCCTTGGCATTGGATATACAGGTATGATTTTGCATGCTGCATTTCGGAAGCTGACTCCCACCAAGCCCACATCTACCGTAAGTCGGAAATAG

Protein sequence

MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK

Homology

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BLAST of CsGy4G021670 vs. NCBI nr
Match: XP_004146052.1 (PREDICTED: PRA1 family protein H [Cucumis sativus] >XP_004146053.1 PREDICTED: PRA1 family protein H [Cucumis sativus] >KGN55111.1 hypothetical protein Csa_4G630550 [Cucumis sativus])

HSP 1 Score: 465.7 bits (1197), Expect = 9.3e-128
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
           FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGF+GFFESYSFPSSPAQARLRV
Sbjct: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ
Sbjct: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK
Sbjct: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 235

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BLAST of CsGy4G021670 vs. NCBI nr
Match: XP_008463685.1 (PREDICTED: PRA1 family protein H [Cucumis melo] >XP_008463686.1 PREDICTED: PRA1 family protein H [Cucumis melo])

HSP 1 Score: 456.8 bits (1174), Expect = 4.3e-125
Identity = 227/235 (96.60%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPP RPTPTAAAPLATG
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPTRPTPTAAAPLATG 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
           FFISLFSRIATLLS+FTLNPF+KLSAADFSGPTPSWT+GF+GFFESYSFPSSPAQARLRV
Sbjct: 61  FFISLFSRIATLLSVFTLNPFSKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ
Sbjct: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           CLVRIAQCAT IILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKP ST+SRK
Sbjct: 181 CLVRIAQCATAIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPPSTISRK 235

[Close]

BLAST of CsGy4G021670 vs. NCBI nr
Match: XP_022935725.1 (PRA1 family protein H-like [Cucurbita moschata] >XP_022935726.1 PRA1 family protein H-like [Cucurbita moschata] >XP_022935727.1 PRA1 family protein H-like [Cucurbita moschata] >XP_022935728.1 PRA1 family protein H-like [Cucurbita moschata])

HSP 1 Score: 424.1 bits (1089), Expect = 3.1e-115
Identity = 212/238 (89.08%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS---AAPPARPTPTAAAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS   A  P RPTP A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60

Query: 61  ATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQAR 120
           ATGFFIS FSRI TLLS+FTLNPFAKLSAADF+GPTPSWT+GF+GFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFC DRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180

Query: 181 LWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           +WQCLVRIAQC TVIILLFSNFQMAIFCALG+GYTGMILHAAFRKLT T+P S+++RK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CsGy4G021670 vs. NCBI nr
Match: XP_022976569.1 (PRA1 family protein H-like [Cucurbita maxima] >XP_022976570.1 PRA1 family protein H-like [Cucurbita maxima] >XP_022976572.1 PRA1 family protein H-like [Cucurbita maxima] >XP_022976573.1 PRA1 family protein H-like [Cucurbita maxima])

HSP 1 Score: 414.5 bits (1064), Expect = 2.5e-112
Identity = 209/238 (87.82%), Postives = 220/238 (92.44%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAA---PPARPTPTAAAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSA          PTA APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAAXXXXXXXPTAVAPL 60

Query: 61  ATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQAR 120
           ATGFFIS FSRI TLLS+FTLNPFAKLSAADF+GPTPSWT+GF+GFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFC DRW LDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWALDKYPV 180

Query: 181 LWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           +WQCLVRIAQC TVIILLFSNFQMAIFCALG+GYTGMILHAAFRKLT T+P S+++RK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALGVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CsGy4G021670 vs. NCBI nr
Match: XP_023535020.1 (PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535022.1 PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535023.1 PRA1 family protein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.5 bits (1064), Expect = 2.5e-112
Identity = 209/238 (87.82%), Postives = 220/238 (92.44%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAA---PPARPTPTAAAPL 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSA          PTA APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAAXXXXXXXPTAVAPL 60

Query: 61  ATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQAR 120
           ATGFFIS FSRI TLLS+FTLNPFAKLSAADF+GPTPSWT+GF+GFFESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFC DRWGLDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDKYPV 180

Query: 181 LWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           +WQCLVRIAQC TVIILLFSNFQMAIFCAL +GYTGMILHAAFRKLT T+P S+++RK
Sbjct: 181 VWQCLVRIAQCVTVIILLFSNFQMAIFCALAVGYTGMILHAAFRKLTLTRPPSSINRK 238

[Close]

BLAST of CsGy4G021670 vs. TAIR10
Match: AT4G27540.1 (prenylated RAB acceptor 1.H)

HSP 1 Score: 238.8 bits (608), Expect = 3.4e-63
Identity = 125/235 (53.19%), Postives = 156/235 (66.38%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQR--------TSDLHRHSSAAPPARPTPT 60
           M+FS NPLSLSVPD AF+SWLRDSGYLE+LD R                           
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  AAAPLATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSS 120
                         SR+ T+ S+ T+NPF+KLSA DFSG T  WTTGF+G  +SYSFPSS
Sbjct: 61  XXXXXXXXXXXXXXSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSS 120

Query: 121 PAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGL 180
             QAR+RVHEN KR+ARNYA+LF++FF C LYQMPLAL+GL+  LALW++ K+C D+W  
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKF 180

Query: 181 DKYPVLWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTK 228
           D++P + +  + I QCAT ++L F N QMA+F AL I Y+ MILHA FRKLTP+K
Sbjct: 181 DRHPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSK 235

[Close]

BLAST of CsGy4G021670 vs. Swiss-Prot
Match: sp|Q8LFP1|PRA1H_ARATH (PRA1 family protein H OS=Arabidopsis thaliana OX=3702 GN=PRA1H PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-62
Identity = 125/235 (53.19%), Postives = 156/235 (66.38%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQR--------TSDLHRHSSAAPPARPTPT 60
           M+FS NPLSLSVPD AF+SWLRDSGYLE+LD R                           
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  AAAPLATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSS 120
                         SR+ T+ S+ T+NPF+KLSA DFSG T  WTTGF+G  +SYSFPSS
Sbjct: 61  XXXXXXXXXXXXXXSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSS 120

Query: 121 PAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGL 180
             QAR+RVHEN KR+ARNYA+LF++FF C LYQMPLAL+GL+  LALW++ K+C D+W  
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKF 180

Query: 181 DKYPVLWQCLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTK 228
           D++P + +  + I QCAT ++L F N QMA+F AL I Y+ MILHA FRKLTP+K
Sbjct: 181 DRHPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSK 235

[Close]

BLAST of CsGy4G021670 vs. TrEMBL
Match: tr|A0A0A0L4P4|A0A0A0L4P4_CUCSA (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G630550 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 6.2e-128
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
           FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGF+GFFESYSFPSSPAQARLRV
Sbjct: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ
Sbjct: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK
Sbjct: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 235

[Close]

BLAST of CsGy4G021670 vs. TrEMBL
Match: tr|A0A1S3CLE4|A0A1S3CLE4_CUCME (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103501773 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 2.9e-125
Identity = 227/235 (96.60%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPP RPTPTAAAPLATG
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPTRPTPTAAAPLATG 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
           FFISLFSRIATLLS+FTLNPF+KLSAADFSGPTPSWT+GF+GFFESYSFPSSPAQARLRV
Sbjct: 61  FFISLFSRIATLLSVFTLNPFSKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ
Sbjct: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTVSRK 236
           CLVRIAQCAT IILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKP ST+SRK
Sbjct: 181 CLVRIAQCATAIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPPSTISRK 235

[Close]

BLAST of CsGy4G021670 vs. TrEMBL
Match: tr|E0CSG8|E0CSG8_VITVI (PRA1 family protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02300 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 6.3e-80
Identity = 147/227 (64.76%), Postives = 187/227 (82.38%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           M+FSSNPLSLSVPDAAF++WLRD+GYLE++D+RTSDLHR SS    +  + TA+ P  + 
Sbjct: 1   MAFSSNPLSLSVPDAAFETWLRDTGYLEVVDRRTSDLHRLSSGGDSS--STTASIPSNSF 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
           FF+S+ S + TLLS+FTLNPF+KL++ DFSGPTPSWT  F+GF +SY+FPSS +QARLRV
Sbjct: 61  FFVSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HEN KRYARNYA+LF++ F CTLYQMP+AL+GLIS LALWD+++FC D+W +D+YPV+ Q
Sbjct: 121 HENVKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVRQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTK 228
            L+   QCAT ++L  SN Q A+FCALG+ Y  MILHA+FRKLTP K
Sbjct: 181 ALIHTVQCATAVVLFCSNVQFALFCALGVSYAVMILHASFRKLTPAK 225

[Close]

BLAST of CsGy4G021670 vs. TrEMBL
Match: tr|A0A1J7GQR4|A0A1J7GQR4_LUPAN (PRA1 family protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25170 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 8.2e-80
Identity = 154/230 (66.96%), Postives = 180/230 (78.26%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           M FSSNPL+LSVP+ AF+SWLRDSGYL+ILD      HR SSAA  +  T  A    A G
Sbjct: 1   MVFSSNPLALSVPEPAFESWLRDSGYLDILD------HRTSSAADTSATTSIATVTPAAG 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
           FF+SLFS  AT++S+FTLNPFAKL+A DFSG TPSW+  F GF  SYSFPSS +QARLRV
Sbjct: 61  FFVSLFSHFATIISLFTLNPFAKLTADDFSGDTPSWSRSFFGFCGSYSFPSSSSQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HEN KRYARNYA LF++FF CTLY+MPLAL+GLISCLALWD  K+  DRWGLD+YP+  Q
Sbjct: 121 HENIKRYARNYAYLFIVFFACTLYKMPLALVGLISCLALWDFFKYFSDRWGLDEYPITRQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTS 231
           CL+R AQCAT +IL++SN Q+A+FCAL + Y G ILHAAFRKL P K  S
Sbjct: 181 CLLRFAQCATAVILVYSNVQLALFCALSVSYAGTILHAAFRKLAPAKQPS 224

[Close]

BLAST of CsGy4G021670 vs. TrEMBL
Match: tr|A0A2I4H3Z1|A0A2I4H3Z1_9ROSI (PRA1 family protein OS=Juglans regia OX=51240 GN=LOC109013262 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.1e-79
Identity = 152/227 (66.96%), Postives = 177/227 (77.97%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60
           M+FSSNPLSLSVP+ AF+SWLRDSGYLEILD RTS +       P     P+      + 
Sbjct: 1   MAFSSNPLSLSVPEPAFESWLRDSGYLEILDHRTSSI-------PNTYSDPSTTTLTNST 60

Query: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120
               L S + TLLS+FT NPF+KL+  DFSG TPSW+ GF+GF +SYSFPSSPAQARLRV
Sbjct: 61  ITSGLISLLLTLLSLFTFNPFSKLTTEDFSGQTPSWSYGFVGFCDSYSFPSSPAQARLRV 120

Query: 121 HENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQ 180
           HEN KRYARNYA+LF+LFF CTLYQMPLAL+GL+SCLALWD+ KFC +RWGLD +PV+ Q
Sbjct: 121 HENVKRYARNYATLFILFFACTLYQMPLALIGLLSCLALWDVFKFCSNRWGLDHHPVIQQ 180

Query: 181 CLVRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTK 228
           CLVRIAQC   +I++ SN QMA+FCALG  YTGMILHAAFRKLT  K
Sbjct: 181 CLVRIAQCVAAVIVICSNVQMALFCALGFSYTGMILHAAFRKLTSAK 220

The following BLAST results are available for this feature:

BLAST of CsGy4G021670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146052.1	9.3e-128	99.57	PREDICTED: PRA1 family protein H [Cucumis sativus] >XP_004146053.1 PREDICTED: PR...	[more]
XP_008463685.1	4.3e-125	96.60	PREDICTED: PRA1 family protein H [Cucumis melo] >XP_008463686.1 PREDICTED: PRA1 ...	[more]
XP_022935725.1	3.1e-115	89.08	PRA1 family protein H-like [Cucurbita moschata] >XP_022935726.1 PRA1 family prot...	[more]
XP_022976569.1	2.5e-112	87.82	PRA1 family protein H-like [Cucurbita maxima] >XP_022976570.1 PRA1 family protei...	[more]
XP_023535020.1	2.5e-112	87.82	PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535022.1 PRA1 fam...	[more]

BLAST of CsGy4G021670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27540.1	3.4e-63	53.19	prenylated RAB acceptor 1.H	[more]

BLAST of CsGy4G021670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LFP1\|PRA1H_ARATH	6.1e-62	53.19	PRA1 family protein H OS=Arabidopsis thaliana OX=3702 GN=PRA1H PE=2 SV=1	[more]

BLAST of CsGy4G021670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4P4\|A0A0A0L4P4_CUCSA	6.2e-128	99.57	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G630550 PE=3 SV=1	[more]
tr\|A0A1S3CLE4\|A0A1S3CLE4_CUCME	2.9e-125	96.60	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103501773 PE=3 SV=1	[more]
tr\|E0CSG8\|E0CSG8_VITVI	6.3e-80	64.76	PRA1 family protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02300 PE=3 SV=1	[more]
tr\|A0A1J7GQR4\|A0A1J7GQR4_LUPAN	8.2e-80	66.96	PRA1 family protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25170 PE=3 SV=1	[more]
tr\|A0A2I4H3Z1\|A0A2I4H3Z1_9ROSI	4.1e-79	66.96	PRA1 family protein OS=Juglans regia OX=51240 GN=LOC109013262 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004895	Prenylated_rab_accept_PRA1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G021670.1	CsGy4G021670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 103..222 e-value: 2.0E-15 score: 56.6
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 2..228
None	No IPR available	PANTHER	PTHR19317:SF1	PRA1 FAMILY PROTEIN 2	coord: 2..228

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G021670	Cla023367	Watermelon (97103) v1	cgybwmB326
CsGy4G021670	Csa4G630550	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G021670	MELO3C025603	Melon (DHL92) v3.5.1	cgybmeB254
CsGy4G021670	ClCG11G017890	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G021670	CSPI04G23300	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G021670	CmaCh09G008500	Cucurbita maxima (Rimu)	cgybcmaB466
CsGy4G021670	CmaCh01G012170	Cucurbita maxima (Rimu)	cgybcmaB515
CsGy4G021670	CmoCh09G008430	Cucurbita moschata (Rifu)	cgybcmoB434
CsGy4G021670	CmoCh01G012720	Cucurbita moschata (Rifu)	cgybcmoB484
CsGy4G021670	Lsi04G020540	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G021670	Cp4.1LG06g06770	Cucurbita pepo (Zucchini)	cgybcpeB563
CsGy4G021670	Cp4.1LG02g01780	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G021670	MELO3C025603.2	Melon (DHL92) v3.6.1	cgybmedB252
CsGy4G021670	CsaV3_4G033520	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G021670	Cla97C11G223910	Watermelon (97103) v2	cgybwmbB265
CsGy4G021670	Bhi09G002823	Wax gourd	cgybwgoB398
CsGy4G021670	Carg17085	Silver-seed gourd	carcgybB0182
CsGy4G021670	Carg14705	Silver-seed gourd	carcgybB0323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G021670	Cucumber (Gy14) v2	cgybcgybB025
CsGy4G021670	Cucumber (Gy14) v2	cgybcgybB137
CsGy4G021670	Cucurbita maxima (Rimu)	cgybcmaB482
CsGy4G021670	Cucurbita maxima (Rimu)	cgybcmaB500
CsGy4G021670	Cucurbita moschata (Rifu)	cgybcmoB452
CsGy4G021670	Cucurbita moschata (Rifu)	cgybcmoB470
CsGy4G021670	Cucurbita pepo (Zucchini)	cgybcpeB490
CsGy4G021670	Cucurbita pepo (Zucchini)	cgybcpeB537
CsGy4G021670	Cucumber (Chinese Long) v2	cgybcuB158
CsGy4G021670	Cucumber (Chinese Long) v2	cgybcuB190
CsGy4G021670	Bottle gourd (USVL1VR-Ls)	cgyblsiB252
CsGy4G021670	Watermelon (Charleston Gray)	cgybwcgB270
CsGy4G021670	Watermelon (97103) v1	cgybwmB307
CsGy4G021670	Wild cucumber (PI 183967)	cgybcpiB161
CsGy4G021670	Wild cucumber (PI 183967)	cgybcpiB193
CsGy4G021670	Wild cucumber (PI 183967)	cgybcpiB196
CsGy4G021670	Silver-seed gourd	carcgybB0653
CsGy4G021670	Cucumber (Chinese Long) v3	cgybcucB194
CsGy4G021670	Watermelon (97103) v2	cgybwmbB258
CsGy4G021670	Wax gourd	cgybwgoB385