CsGy4G020750 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G020750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 27520459 .. 27520761 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTCAAACTCTCTCACCACATTGAGTTGCTTCTGTTTAGTTCCCTTCACCTTTCGTTCGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGTTAGTTTCTTGACTCAACGTCCAAGCCATTCGTTTGTCACATGAAAGGAGAAAATAGTGGAGAGGGCAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

mRNA sequence

ATGTTGTTCAAACTCTCTCACCACATTGAGTTGCTTCTGTTTAGTTCCCTTCACCTTTCGTTCGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGAGAAAATAGTGGAGAGGGCAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

Coding sequence (CDS)

ATGTTGTTCAAACTCTCTCACCACATTGAGTTGCTTCTGTTTAGTTCCCTTCACCTTTCGTTCGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGAGAAAATAGTGGAGAGGGCAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

Protein sequence

MLFKLSHHIELLLFSSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVERARMRARMGSMELEGKSEKHEIMIF

Homology

[Close]

BLAST of CsGy4G020750 vs. NCBI nr
Match: KGN55003.1 (hypothetical protein Csa_4G620660 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MLFKLSHHIELLLFSSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60
          MLFKLSHHIELLLF SLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER
Sbjct: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60

Query: 61 ARMRARMGSMELEGKSEKHEIMIF 85
           RMRARMGSMELEGKSEKHEIMIF
Sbjct: 61 GRMRARMGSMELEGKSEKHEIMIF 84

[Close]

BLAST of CsGy4G020750 vs. TrEMBL
Match: tr|A0A0A0KZY6|A0A0A0KZY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620660 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MLFKLSHHIELLLFSSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60
          MLFKLSHHIELLLF SLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER
Sbjct: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60

Query: 61 ARMRARMGSMELEGKSEKHEIMIF 85
           RMRARMGSMELEGKSEKHEIMIF
Sbjct: 61 GRMRARMGSMELEGKSEKHEIMIF 84

The following BLAST results are available for this feature:

BLAST of CsGy4G020750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55003.1	1.9e-35	97.62	hypothetical protein Csa_4G620660 [Cucumis sativus]	[more]

BLAST of CsGy4G020750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G020750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G020750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZY6\|A0A0A0KZY6_CUCSA	1.3e-35	97.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620660 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G020750.1	CsGy4G020750.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G020750	Csa4G620660	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G020750	CsaV3_4G032590	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G020750	Cucurbita maxima (Rimu)	cgybcmaB470
CsGy4G020750	Cucurbita maxima (Rimu)	cgybcmaB515
CsGy4G020750	Cucurbita moschata (Rifu)	cgybcmoB437
CsGy4G020750	Cucurbita moschata (Rifu)	cgybcmoB484
CsGy4G020750	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G020750	Cucurbita pepo (Zucchini)	cgybcpeB566
CsGy4G020750	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G020750	Melon (DHL92) v3.5.1	cgybmeB275
CsGy4G020750	Melon (DHL92) v3.6.1	cgybmedB273
CsGy4G020750	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G020750	Watermelon (97103) v1	cgybwmB326
CsGy4G020750	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G020750	Silver-seed gourd	carcgybB0323
CsGy4G020750	Silver-seed gourd	carcgybB0634
CsGy4G020750	Watermelon (97103) v2	cgybwmbB265
CsGy4G020750	Wax gourd	cgybwgoB398