Csa4G620660 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G620660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 19875070 .. 19875372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCAAACTCTCTCACCACATTGAGTTACTTCTGTTTGATTCCCTTCACCTTTCGTTTGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGTTAGTTTCTTGAGTCAACGTCCAAGCCATTCGTTTGTCACATGAAAGGAGAAAATAGTGGAGAGGGGAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

mRNA sequence

ATGTTGTTCAAACTCTCTCACCACATTGAGTTACTTCTGTTTGATTCCCTTCACCTTTCGTTTGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGAGAAAATAGTGGAGAGGGGAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

Coding sequence (CDS)

ATGTTGTTCAAACTCTCTCACCACATTGAGTTACTTCTGTTTGATTCCCTTCACCTTTCGTTTGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGAGAAAATAGTGGAGAGGGGAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

Protein sequence

MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVERGRMRARMGSMELEGKSEKHEIMIF*
Homology
[Close]
BLAST of Csa4G620660 vs. TrEMBL
Match: A0A0A0KZY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620660 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60
          MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER
Sbjct: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60

Query: 61 GRMRARMGSMELEGKSEKHEIMIF 85
          GRMRARMGSMELEGKSEKHEIMIF
Sbjct: 61 GRMRARMGSMELEGKSEKHEIMIF 84

[Close]
BLAST of Csa4G620660 vs. NCBI nr
Match: gi|700199845|gb|KGN55003.1| (hypothetical protein Csa_4G620660 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60
          MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER
Sbjct: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60

Query: 61 GRMRARMGSMELEGKSEKHEIMIF 85
          GRMRARMGSMELEGKSEKHEIMIF
Sbjct: 61 GRMRARMGSMELEGKSEKHEIMIF 84

The following BLAST results are available for this feature:
BLAST of Csa4G620660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZY6_CUCSA3.1e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620660 PE=4 SV=1[more]
BLAST of Csa4G620660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199845|gb|KGN55003.1|4.4e-39100.00hypothetical protein Csa_4G620660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G620660.1Csa4G620660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G620660CsGy4G020750Cucumber (Gy14) v2cgybcuB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G620660Wax gourdcuwgoB419
Csa4G620660Cucumber (Gy14) v1cgycuB042
Csa4G620660Cucumber (Gy14) v1cgycuB043
Csa4G620660Cucurbita maxima (Rimu)cmacuB025
Csa4G620660Cucurbita maxima (Rimu)cmacuB474
Csa4G620660Cucurbita moschata (Rifu)cmocuB016
Csa4G620660Cucurbita moschata (Rifu)cmocuB462
Csa4G620660Melon (DHL92) v3.5.1cumeB273
Csa4G620660Watermelon (Charleston Gray)cuwcgB279
Csa4G620660Watermelon (97103) v1cuwmB349
Csa4G620660Cucurbita pepo (Zucchini)cpecuB565
Csa4G620660Cucurbita pepo (Zucchini)cpecuB786
Csa4G620660Bottle gourd (USVL1VR-Ls)culsiB283
Csa4G620660Bottle gourd (USVL1VR-Ls)culsiB290
Csa4G620660Melon (DHL92) v3.6.1cumedB304
Csa4G620660Silver-seed gourdcarcuB0339
Csa4G620660Silver-seed gourdcarcuB0657
Csa4G620660Watermelon (97103) v2cuwmbB279