CsaV3_4G032590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G032590
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 22997094 .. 22997396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCAAACTCTCTCACCACATTGAGTTACTTCTGTTTGATTCCCTTCACCTTTCGTTTGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGTTAGTTTCTTGAGTCAACGTCCAAGCCATTCGTTTGTCACATGAAAGGAGAAAATAGTGGAGAGGGGAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

mRNA sequence

ATGTTGTTCAAACTCTCTCACCACATTGAGTTACTTCTGTTTGATTCCCTTCACCTTTCGTTTGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGAGAAAATAGTGGAGAGGGGAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

Coding sequence (CDS)

ATGTTGTTCAAACTCTCTCACCACATTGAGTTACTTCTGTTTGATTCCCTTCACCTTTCGTTTGAAGATGTTGTGGCAAAGAAGATAGAGAGAAGATCACATAGAAGACGAGATCACGTGAAGAATGAAGTTGCTTATGTTTGTGGCCGACAATCACAGTTAGAGAAAATAGTGGAGAGGGGAAGAATGAGGGCAAGAATGGGAAGCATGGAATTGGAGGGAAAGAGTGAGAAGCATGAAATTATGATTTTTTAA

Protein sequence

MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVERGRMRARMGSMELEGKSEKHEIMIF
Homology
[Close]
BLAST of CsaV3_4G032590 vs. NCBI nr
Match: KGN55003.1 (hypothetical protein Csa_4G620660 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.7e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60
          MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER
Sbjct: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60

Query: 61 GRMRARMGSMELEGKSEKHEIMIF 85
          GRMRARMGSMELEGKSEKHEIMIF
Sbjct: 61 GRMRARMGSMELEGKSEKHEIMIF 84

[Close]
BLAST of CsaV3_4G032590 vs. TrEMBL
Match: tr|A0A0A0KZY6|A0A0A0KZY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620660 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60
          MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER
Sbjct: 1  MLFKLSHHIELLLFDSLHLSFEDVVAKKIERRSHRRRDHVKNEVAYVCGRQSQLEKIVER 60

Query: 61 GRMRARMGSMELEGKSEKHEIMIF 85
          GRMRARMGSMELEGKSEKHEIMIF
Sbjct: 61 GRMRARMGSMELEGKSEKHEIMIF 84

The following BLAST results are available for this feature:
BLAST of CsaV3_4G032590 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55003.12.7e-37100.00hypothetical protein Csa_4G620660 [Cucumis sativus][more]
BLAST of CsaV3_4G032590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G032590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G032590 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZY6|A0A0A0KZY6_CUCSA1.8e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620660 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G032590.1CsaV3_4G032590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G032590CsGy4G020750Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G032590Silver-seed gourdcarcucB0344
CsaV3_4G032590Silver-seed gourdcarcucB0668
CsaV3_4G032590Cucumber (Gy14) v1cgycucB045
CsaV3_4G032590Cucurbita maxima (Rimu)cmacucB0032
CsaV3_4G032590Cucurbita maxima (Rimu)cmacucB0566
CsaV3_4G032590Cucurbita moschata (Rifu)cmocucB0019
CsaV3_4G032590Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G032590Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G032590Cucurbita pepo (Zucchini)cpecucB0973
CsaV3_4G032590Cucurbita pepo (Zucchini)cpecucB0979
CsaV3_4G032590Wild cucumber (PI 183967)cpicucB212
CsaV3_4G032590Wild cucumber (PI 183967)cpicucB217
CsaV3_4G032590Bottle gourd (USVL1VR-Ls)cuclsiB304
CsaV3_4G032590Melon (DHL92) v3.5.1cucmeB321
CsaV3_4G032590Melon (DHL92) v3.6.1cucmedB314
CsaV3_4G032590Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G032590Watermelon (97103) v1cucwmB367
CsaV3_4G032590Watermelon (97103) v2cucwmbB281
CsaV3_4G032590Wax gourdcucwgoB426
CsaV3_4G032590Wax gourdcucwgoB432