CsGy4G018750 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G018750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	E3 ubiquitin-protein ligase CHFR-like
Location	Chr4 : 24587873 .. 24602571 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTAATTCTTCTAGGTCATTGGGTCTGTGAAAAAGCGAAACCAAAAAAGGCCTCATTTTTTATTGGGCCTGGAGGAGAGCGGTGGTTTAGAGCTTCCATGCCCTCAATGTGGTAAATATTTTCTTCCTGTTTTACATCACCTCTTTGTTCCCTCTCTTCATTCAAAACTCTTCTAAAAAACTCTGTTGGTTGAATTATCGCTAACCCTACAAGCTCAAACAGATATGTTTGAGGTATATTTATTCTTTTCATATATTCCTAACAATCTTTTTGTATATTTATTCTCTCTTTTATGATTAGCTATTTGACAAAAGTTCAAAATTCTTTTGTGCAAGTTCCAATCATCATCAATGAAATGATCCATTATAACCATTTAATTAATATTTTGGACAGAAGTTTATGTATAAGTTGTTAATCAAAATCTTTGGCCACTTCAAGTTAATGCACTTTTTAACTTTTTTTCTTCCACATATATATTTGAAAACAATCCTTTGCAACGGTCACTCTTGATGGAATTTACGAAATCCTTCACTTTCTACGAACTTTGGATTCAATGCCTAACAAAATTTACAAAATCCTTCACTTTCTACGAACTTAAATGGCAATTCATCTAAGATGACCCACAATACTTACAAGCAGCTCTAGGGCATGCCTTGAGAAAGCTGCTAGGAGAATGAAGAAATGAGCCGATAGGAAAAGAAGGCTGAAAGAGTACCAAGTGGGAGACAGTGTGATGGTGAAATTACTGCCAAACCAATTTCAGAGTGTGGGTGAATTATTGCCAAACCAATTTAAGTCCTTGCAGAAGGTGCATAGGCTTAGTACGAAGATACGAAGGCCCATTCCTTATCATAGAAAAAGTGGGCAAGGCAGCCTATCGGTTGGAACTACCTCCTAAACTCAAGATACACATCGTCTTCCATGTAAGTATGCTAAAACCCTTTCATGAAGACAAAGAAGACCCTAGTCGGAGCAAGTCCTCCCGTGCATTGACTGTGGTAGTGACTGAGTTTGACAAGAAAATCGGAAGAAATCCTGGCAGAAAGACAGATAAGGCGGAGGGGAGTTCCAAACTACAAAGAATACTTGGTCATTTCGGAAGGTTTGCGAGAAAGTGAAGCAAGTTGGCAACGTGAAGACTTACTCTGGCAATTCCAAGAAGAAATTAAAAAGTTCAAAGAAGGCGCAATGAGGATGTTGCGAAATTAAGTGGGGAGGGCCTCACGCCCCAAAAAAAAATGCAAAATTAAAGCTCCTTAGCATAGACCAGGTGGAGCCAAAACATGGCCACATTGTCCAAAGTCCCAAAACGCTACCAGGACACACCTAAGCCTTGACAAACAACGTGCTTGGCATTCGTGCAACCATACACACGACGCTAGTGCAGCCTTGCATAACAGGTGCACGCTCACAGACGGTCAGGGATATACACACACGAGCCAGATTAGGCAGACTATGAGCACGTGCGTGAGAGACTCGAATGGCTTTAGAGCATTCTTGAACATGCTAAGCACGCTTGGAAGCATCTGGAAGTTCCTATATCGGTTTGAAAGTGTCATGAAATCCCTAGAAGGCTCTAGATGTATTTTAACTTACCTTCAAAGGCGGTTTAAGTGTTCTAATGTCGATTCATCTTTGTATAAATACCCTAATGGGGTCCCATTGGTAACCATCCTTGGGAATTCTCAATAAAGCTTGCTCATTCATTCTACCAAACTCTTCCACACACTTTGCCTACTCTTATCCAACTCTCATGAGTCCCCCACAAACTAGCAAGTCAATAATCACTTGAAGGCTTACATTGGTGCTTCTTTGTAAGTGAGATCACCATTGTGCTGCACGGTCAGTTGCTTGAAAACAGTAACTACGTGGCCAGAAGCTAAGTACAGGGCTATGATTTTTGGGGATGTATGAAAAAATTTGGCTTCAGAAGGTTTTATCTGACATTCTTCAGAACTGTAAGGTGCCCATGAAATTATTTTGTGGTAATAAGGTAGGTATTAGCATCGCCAACAATTGAGTTCAACTTGATAAAATAAAACATGTGAAGATTGATTCACACTTCATTAAAGAGAGACTGGCCAAGAAAAGCAACTGGACCACTCCTGCGGTACGCAGGTCTCTCAACCCAACCTTTGGTTAATTTCTTCCTCTTTGATTAGTCCACACCATTGTTTTGCTTATATTCAGGAGAACCCAGGTGGAAGTGAACCTCTTTTCTGCCACTGAGTTAGGGGCAACGTGTTTTTTATCAGGTTTGGGGCATAGGTCGAAGGCAAGAAAGAACATCATATCAGCCATTTGGAAGTCGTTTATGATGGAAAATAGACATTTATGGGGTTTTGGGTGTATGATGTGGTAGGAATAGGATATTACAGTCAAATCCTTAATTTATTATGATTAGGATTAGGATTAGTTTCTCTGGTTTATTAGGATTAGGATTAAGTTTCTTTTATTAATTAGGATTAGGATTAGTTTACTTTTGCTATAAATAGAGTACTAGTTCTCTTACACATTCCTTTCCTGGTCTTCATGGAATTATGACTTCATTCCAAGTGATTTTAATTTTGATTTTAATTTTTTTGTTACATTTTATGCCAATTTGACAAGTTGATTTTTATTTTCCAGGTACTGAATATGCTGGATTTCGCTGTAATCCACACATGGTTCATCTACAATGTCATGAATGTGGAGGAATGATGCCTTCTCGATTTGATACTGGGATACCTCAACATTGTACGTGTCCATTTTCCCTTTCTGTTCTTTCTGGAATTGTGATGTTGTTACTTTATCTTGTAACACAAGGCTGCTCACATTTTTTGTAAGAAAAGCTTATTTAAGATTGGTGCTTCCAACATTTCGTTAGGCCACTGATTCTTTTGCTGTCAAAGAATGTAATTTTCTGTTTATTTCACAAAGAGATAACTATTTTCTTAAATAGAAGAACAACTCATTACAAAGAAAGAAAAAACAAATTTGGCAAATATGATACAACCAATACAATAAAATATAATACAAAAAAGGAAATAATCAACACTTCCCCTCAAGTTGGTTTGAAGATATTAGTTACTGCTACCGCTAGCTTGTCAACCAATTTGTTGAATTGCCACCTTTGAAGGCCTTTAGTTAACACATCTGCATTTTATTCGGTTGTCGGAAGGTAGGGTACGCATATTACTTATGTATCGATCTTTTTCTTTATAAAGTGTTTATCAACTTCTATATGTTTTGTCCTATCATGAAGGACTAGATTTTGGGAAATGGAAATTCCTGCCTTGTTATCACAGTACATGCACGTGGGTGTCACCTAAGTGAATATCAATTCTTCCATCAGTCTTCTTATCCATTTACCCTCACAAATACCATGGGCTAAAGAACTAAATTCTCCTTCTGACTTGCAACCACACTCAGTTTTTTACTTCACCAAGTAACAAGAAAAGGGGCAGTAACAAAAGAGGATCTTCTATCAGTCGTGCTACTTGTCCAATCAGCATCAGTGTAAACTTTAACATGAAGATGATCGTGCCCTTTAAACAATGTGCCTTTTCCTGGAGTACCTGTGAAATATCTTAGGATTCTATAAACCGCGTCAAAGTTAGCTGGCCATAGGAGCATGCATGAACTGACTTACTATCCTAACTGCAAAACCGATCTCAGGACATGTGTGAGAAAGATATGAGTCTCCCAACTAGTCTGGTACTTTTTTCCTTTTCTTTATCTTATTTTTTGTTGCACCTTCCAATTTCAGATTCTACTCCATGGGAGTTTTTGCTACCTTGAGTAAACTTCTCTCTTCTAGCAGATCAAGAATATACTTCATTTGGTTGACAACTTTTGGATTTTGCAAACTCCATGTCATGAACAATAAAGGCCTTTAAATAAATCTGGAAACAAATACTTTAAGTAAATGAAATTAGGATGCTCTTATCTATGATGCCAAATTCTTTAGAAGAAGGTGAACAGACACTTCAAGCCCTGAACTTGTTTATGACTAGCTGAAACTTCATCCAAGTAATAGAGACCACCCATCATCCTAGTACATCTAATCGTTTCCCCCAAGTCCTGATCATGAAAGGTACAATGAGTGTCACAGAAGACAACACGACAATTAGCATGTTTAGAGATTTTACTAACACATAACAAATTGCAAGCTAATTTTGGAACATGTAGAACAGAATGCAACTTAAGTTTTGTAGTTAGAGGAATAGTTCCTTTTCCTACAACATGGGGGAAACTACCATCAGTGACGTGAATTTTTTCATTGCAATATATAGGAGAGTAGGATGCAAATAAGGAAGAGGAATTGGTCATATAACCAGAGGCTCCAGAATCTATAATTCATGGAGATGAGTTTATGCAAGAGACTGAGGAAAATTACCTGATTGTGCCAAGGAAACACTAGGATTACCAGATGGGGAAGTAGTCTTTAGCGGTTTCAAGATTTGATCAATTTTCTCCTTGTTAAACAGGTTGGAATCACCAACATTCGCATTTGAGGTGTGTAGGTGGGAATTTTTTCCCTTGTTTAGAACTTTTCCAATTTGCAGATTTTCCATGAAGCTTTCAACATGTTTCATGTGTATGTCGGGGTTTATTGCAATGGCCACATCAGATTTGAGGCTTTTCATGTGTCTTGTTGGAATGATCAAAGGCTTCATGGCTGTTTGTTTGGTCACCAACGTAGAACTTTCTACTGAATCAATAGGCTTTTTTTCAATTATAACATTTTTGCAGCTTTCTTCCTTGTAAACTTCAGAAAAAACGTCATTAATAGATGGAAGAGTGATTTTCCCAAGTATTCGACCTCTAACCTCATAAAATTCAACATTAAGGCCGGCAAGGAACTTGTAAATACGATTGTTTTGTACAATTTTCCTGTAATGCTTTCGAACATTTGTAGACTTCCACTCGTATGAATCAAGGAGATGGAACTCTTGCCAAATATTTTTTAGGAGGTGAAAGTATTGTGTCACCGAGTTACCTCCTTGGCATATATCTACTAATTTGAGATTGGACTAAAATACTTGTGATTGATTGCCTAAATCAAAGTACATCTGTGTCACACTATTGCACAATTCCTTGGCTATAGGGTAGCACATGTAATTACATTTGATGTCTTCAACCATGGAGTTTTCAGCATCCTATGCAGCAAACAAAGGGTCGTCTAGTTTTGGGGCAGTTTTCTTACCCATAATGTAGCCAATTTTCCCTTGTCCACGAATATACAATATAACACTTTGTGACAAATGAAGAAAGTTTTCTCCATTAAGTCGGATCGTGGTGATTTGGATAGTTGGGCTATTGGAGTGGATATGATTGTCGACTTTAGCCATAGGTAACTTAGTATCCAACATGGCTTGAAGCAACAAAGGTCAGAAAATGGAGAGAGCAAATCTGGAAACACCAACCAAACTCGTTAGTAGCAAACGGCAACAGGCAATGGCAGAAGACTTAGAAAGGGGTAATCAGCAAGGACCACGACGAACGACAGTGAAGACAAAAAAAGAACACCTACTTGCAGCTAAAAATCGCAAGCAACCACTGGCACTATCGGCGATGTCCAATGAGTTGTAGTTGACGACAACGATTGTATGAGTTTTTGGGCTTTTTATGTTTTCAAAAAATTAGGTTTTTTTAAGGGTTTCAAAACCTTCTCTAATACCATGGCAAAGAATGTAATTTTCTGTTTATTTTACCGAGAGAAGAGTTTTCTTAAATAGAAGAGCAACCCATTACAAAGAAGGAAAAAATAAATTTGGCAAATATAATACAATCATTACAATAAAATATAATACAAAAAAGGAAATAATCAGCATATACAATATACAAGGAGGGGTAAAAAGGGTATGACATATGTAGCGGGGAGTGTGGCTTTTACATTCAACAGCAATATGGCATTCCCCACAATTAGAGAAAGGAGAGAGAGGGTGTATATATGGGGGAAGGAAGTCACAGTAGATTTGCTTTTCACATATGGCTCTTATGTTGTTGAGAGGAAGAGGAGAAGTTCTCTAACGCCCCAGGCCCATGATTCAAACTAGAATTTGGAATTTGGATCCCTGACATTTCCCTGCGAGCTGACAACATCATCCTTATTGTCTTAAAGGTTTATCAGAGTGAAAGTTCTTCCCACAAACCAACATGAGTCTCTTCAGCATGTTTTGTCCTCACTCACATGAATCCTAGGAAAATTCTCAGGAGGTCACCCAACATAGAATTGTTCCAAGCTAAAGACGTTTAACTTTGGAGTTCCTATCATCGAGTCATCGAAAAGGAATGTGTACCTTGCTGGTATAAATAGTAACTTTTAATTCTTTTATATCTTTCTTAACATTACTTTTATATCCTCATTTCATGTCCTCAGGATCCTTCTCATTCAGATGTGATATTGGTTCATTCATGTCTCCCTCATAAACAAAGTTGTTTTACTTGGACTTGAAACCTAAAAGTAATATGGAAAATATACTTTCATCCTATAGAAACTCATCAACCACCTTGATTTTCAATACTCTCTCATATTTCATTGACCCGAGAGCAATTTATTTATACCTCTCTTATCCATGTCCACGAGCTTCTGCTTGGTTCGTCCTCAAATCACATCTTACTGGGAGAGGTTCCACTCTGATACCATCTGTAACGCTCTAGGCATAGGATTCGAACCAGGATTTGGAATTCGGATCTTCGACATTCTCCTGCATCCCCTGCGACCTGACAACATCATCCTTACTATCTTAAAGACTCATTAGAGTGAAAGTTCTCCCCACAAACCAACACGAGTCACTTCAGCATGCTTTGTCTTCACTCACATGAATTCTAGGAGAATTTCTAAGAGATCACCCAACATAGAATTGCTCCAAGCTAAGTACGGTTAATTTTGGAGTTCCTACGATCGAGCCACCGAAAAGGAAGGTGTACCTTGTTGGTATAGGTAGTAACTTTTAATTCTTTCAATTCTTTCTTAAAATTACTTTCATATCCTCATTTCATGTCCTCATTTTCCCTCTCATTCAAATGTGATACCGATTCATTCATGTCTCCTTCCTAAACTCAGGGTGTTACATGCTTACTAGTGAGGCTAAGAATTATAGTGCCCTAAGGCAAACCTTTCAGTTGAATAAGATTTTCATTATGGTCACCTATCAAATTGCTAGATACATACATTTGTCTTATCTTTCTATCATAATCACAAAGAGATTGCATTATGATTTTAAGAGTCACGTAGATTATTTTTTGTGTGGGTAGATATAGATGAGGAAGAAAGTTGCGTATGGACAGTCAGAATACTGTCAGATCACCTAAGGTGATCCCTGTGTAGTTTGGATATGGACAACTATATTTCTAGAAACGATAAATTGTTTTGCTCTCCCCTTGAGAGGATATTTTTTTAGTAATTCTAAACAAAATCTCTTATCATTAATGAAGCATCGTATAGAACCAGGCCAATTCAGAAATTAATTATTTGTAATGATAGAGTAATATCAAATGAAATGAATGGTTGAAAATGTTGGTTGCTATTATCATGCTACTTGTTAGTGTGAATGATTTGGAAGATATAACCAGAGTTGTCAGGTTGCTATTAATAGTTAATAATTGAATAAAAGCATTGATAGCAATCATGTTTATCTTCACGGGCATAACCGTTTGCCTAACAATCACGTAAAAGTATGCGTTTGTTTACCATAATGCATCTAGTGGACTGACGACTGTTATAAACTTATGACTTTAAATATCAAAATAATCCATATTACTTCAATATGAAAATTAAGTGTATGTAGCAATTTTATGGTGAATTCACTCAACAAATTAGTGTGATGTAAGCTATGATGTAAGTTAATTTTAATATCTTCATTTTATGAAAGATCTTCAGTCGTGGTCCAAATTATTTCAAGTTCAATACTCATTATTTCTTTGTTAATGAAATTTGTTTATATGATATCTTGTTCATCTTAATTTTATATTTCTCTACGATAGATTTGATGAAAGATACGTCAGTTGCAGTCTAAATTATTTCAAGTTCAAGAGGCTCGTCAGTTTTTGTTGATGAAAGTTGTTCATATTGTATGAAGTCAATCTTAATCTTATATTTCTCTAGGATAGATTTTACAGAGATTTAAGTTTCCAATGAAGTTTGAATAAAACTTGGATTTTGAATTCATGAAATTTTTGTGCATTAACTTGAGGGATCTGTGTGGGGCAGAATCTTGGGACTAGTTTGAATTGGTGATGTGTTACAAAATTAACGTTTTCCATCTCTATTTTGTGTAGTTGTGAGCTTTTTGTGTTCATTGCAGCGTTGGAATTAAGAATAGTATATTTTTATTTCTTGCCCAAACTTAAAAGTCAAATGATCCTTCAGGTTTAGGTTGTGATAGAGCATTTTGTGGTGCATATTGGGAAGCTCAGAGTTTACAAAGAAGTGATATATACGCCACTTGCAGTCCCGAAACTTTTAAACCAGTATGTGCTGTTATTGCTTGGTCTCTTTGATTTCTTTTACTTATTTCGTTGGGTATCTGTCAAGGCTTGTTACTGCTTGTCCTTTACATTGTGGCAAGCAAAAATGAAGTTTTGTTTCCATTTTATTTTGTAATTATTTAGACGTAAGCTCACATTAAACTGGAGAGTTGGAGGGTTCTCTTATACTTTTATGTGTAATGCAGATCTCCAGACGTACAATCTCAAGAATTCCACAGTTGACACATGAAAATAATCGGCATGAACAGGATGTAAGATCTGTATCTCCTTATTGATTAAGAAGATTTCCCGGCTTTGCTATTAAGTAGATGATTTGATTCACATTTTGGCTCTTAGATTACGGGGAGGTGCATTAGTCAGATGGGTAAAACATTGCAAGATGTCATCTCGGAATGGATTGTAAGGTTTAGCAACAGAGAAATTGGTAGGTTTTTTCCAACTTTGTTTTTTATTTATTTATTTTTGGAATCAAGGATGCTTTTGTATATCGCTACTGACTCAAAAGTTGTTTGGAATAGTACTTTAAAACTTAAAAATATATATATATATTGCATGAAAGAATTCCACCTAGACTATAGAGCAAAAGGACCCAAATCTTAAAACTTAGCATTGCTGAATCAACAAAAAGTAAGAAATTCCACCTAGTGACAATGTAAGAGAAACTGCAGAAAAGATGTTCCATTTTTGCAATGTTCTTCTATGGGCTTCTCCCACGGGCAAAAAAGCATATGGAGGGGCATTTTTCAAACAATGGAAGTGTGTAATGATAATCGTTATAAAATAATGAAAAAATTGTAGAAATTGTTATTCCACATGTTGCTAGGTGTCACAATCGCAACCTTTTGAATACGGGACGGGCGATTGTGCCGCACCTGTTCTAACTCGATGAACCAGTCAGCTGTACTAAATCCAAAAGTCATCGGCAAACTTGTAGGATGATATAGCCTCCCTTCACATTTTGAGAGAAAATGGTTTTATAAAACGTGAGACAGAAAGATAAGCATTGAAAACATCATTAAAGAAAGCATTGTAGGTTCTTCCATTTGGATTCTCCTCATGGGCCTGCTACCCTTCCTTGCTCGTTCTGCAAGTATCTCTTCAACTTCTTTATCTTCCTTTTGCTTTAGGTCAATGCATGGTCGAGCAATATTGTTGCGTCGCTTATCGTTACGATTTTGGTGGTAGGGTTTTAAGTTGCTCACTTGATTACTAGATGGATTTTCATCCATGCACGTAATGCCACCTTATACGATGCATTTCTTATCCTCTTGTGGACTTCTACAGACCCATCATATTTTCTGACGAGACGCTGATCTTTGCACCCTCTAAACCAAATTTGCTCTACGTTTAGCTTGATGAGAACTTGATCTCCTACTTGAAATTTGAGAGGGCACTGCTTTTTATCATACCACTTTTTCATATGCTTCGAGGCTTTCTCTAAGTAAGCTTGAGTAATGTCTGTAGTCTGCTTCCAGTCTTCCGCGAAGCTGTGAGCTTGTGGATTTTTCCCTGCATAAGGATGACCAACAATCTTAGATAATAAGGCTTGTCTTCTACTTACAATTTCGAAGGGACTCTTCCCCGTTGACGAACTAGTTTGAGCGTTGAAACAGAATTGAGCCACATCTAGCAACTGGACCCAATGCTTTTGTCTTGCATCAACAAAATGGCATAGATACTTGTTGAGCATACAATTGAATCGTTCGGTGTGGCCATCAGTCTGAGGGTGGTGGCTTGAGGATATATTCAGACTCGTCTCCAAGAAGGTAAATAACTTGCTCACGATGCTTGTCGAGACTCCCTTCACAACTTCGAGACTCTCTACAACTTCATGACATGCTTAAAGAACAACTATGTTGTCAACTCGACAGAACATTGTTTGGTAGTAGGGATGGAAGTGGCATACTTCGAGAATCGATCGATGATAACCAAGATGGCCTTAAGGTCGCCCACCTTTGGGAGATGTGTAATAAAGTCCATGGAGACACTCTCCCACGATCTCGTCGGAACAGGTAAGGTTTCAAGAAGCCCAACAACTTTCACCTTCTCGACCTTATCTTGCTGACAAATGAGGCATGCCTTCATATACTGCATGATATCATCTCGCATATTAGGCCAAAAGTAGCCTTTATTCAGCAGTGTTGTAAAGACCTAACTTTTCAGACTAAGCTGAGGTCATTACTGCTTTAACACAAAGACATTGTTTAAACATAAAAGTTCATTAATATATTTAAAATCAAATAGACATCCAAGAAACTTTATTCGGGCCCTATTTCAAACAAAACAAAAATTCAAAAGTATCATTTATAAAGTCACCAACAAACAAACAGTTGTTCTAAACATGAAAGTTCATTTCAATCATCAAAACTTAAAAACAGCAAAATCGTTAACCGGAAGCATTTTGAAAGAGTGTTCCCATATGGCGATCACAAGTCCTTCTTGCCCCTCTCCGGTCTACCTCTCGTATTACCTTTGCCTGAAAAAGTTAAACATGAAAAGGGTGAGTATAAAATATATCCAATAAGAGACCCACTACTTGTCCCGTTAGGGGTAAAAATGGTTAACTTTCTATTAGGAGGTACCCTGCACCATAACAATCTTGTGATCTAGTAGGTTACACGTCAATCAGTCTAGTGATTCCGAGGGATGAACATATTAGTTTAGTGATCCCAAAGGATGCACACATCAGTTTAGTGATCCCGAAGGATGCACACATAAGTCTAGTGATCTCGAAGGATGCACACATCAGTCTAGTGATCCTGAAGGATGCACAAGTGGTGATCCTGTAGGACACCGTGCAAGGTACACTACCCATAGATAAAGTTAACAGTTTTCCCCTAATTCAGTCCAAACAGTTCATGATAGTCACATGAAAGTACAATTAAAACTATCAACATTTCTCCTTCTCTACACATGGTCAATAAAAAATAAATACACTAGTGCATATCACAATTCAGTCAACAGTACGAGTCATCAATCAACACATTCAAATCTACATAACAGTCAAACCATCTCAGTTCAGTGTAATCCATCAACACATTCAAATCTACATATAGCATGCAAGCCCTTTCAGTCAATACATTCCAACTTCAATATAGGGTCCAGTAGTAGAAATCCCTTACTTCAAGCTTAGCTAAATTCCTTAGTTGAACTAAAACCTAACAAGACAATCCTAAACATAATGATAAGAAATTAATAATTTTAGTCCACACCCAAATTTTTCTTTCCAATTTAGCTTACCCAATATTGATGTTGGATCCAACTCAACCCTCGACAGTAAAACCCAAAATACTTCAAGAGTTTCCACTTAGTCCTTAAAGAGAGTCCAAAATATCTTTATTTAAGAGCCAATAGTTGAACGTTAATGGGTAAAAGAAAACCTACAAAAAATTTCACATTAAAACTCAACCAATCTCACCAATTGAGACAATAAAGATGCGACGACGATGGAAAGTAACTGACTGAACGAACAACTCGAATGGAAGACAACAGCCGGAGTGGATCGAAAAACAGAGGGCGATGGTGGCTGAAATATGAAGAAGAAAAGAGAAACCCAAGGGGCGGCGCTCGAGAAATACGAAGAAGAAGAAGAAGAAGAAAAGTTGAAATTGATTTGCATGCGCACCAAGGAGAAATTAAGAACATAATAATAATAATATATTATTATATTATTATTTCCTTTTTTTTCTTTTTCTTTTTTTTTTCCTTTCCTTTTCCTTTTCCTTTCCTTTTCTTTTTTTTTTTGTTTTTCTTTTTTTTTTCCCTTTCTTTTTCTTTATAACAAAATCTCTCTTTTTCTCACCAAACTCCAAGAACATAACACCCAAAATTTAAAATCCTAATAAAATAAGACAATTAGGTTGAGAATAAATACCTCAAATTTTGGGACGTTACAAGTGCATACCTCTCTATCACACAGGATGACTGCCCCCCATAAGGTGTCATGACACTCATGTAGTAACCTTTTCCTCGGATCACATGCTCTTGTAACATACAACCGGTTTCCTTTTGTTAATAACAGATCTTCTTCGACCCAAAACTATCTTGTGTTACCGAGTTTGGCTAGAGCAATAATAGTTGGGGTAGAGGGATCCTTCTGAATGAACTCCCTAATGATATTGCGCATCGATGCATCAACTTTACTTATATGAATGGGGGTTAGCTACACAGTGTTGCATGTTGGCCTTTATGACTAAGAGCGTTGGCAGCTTGATTTCTTGTTCCTTACTTGTGCTTGAATTTGAAGGTGAATTCAGCAAAAAATTTCTGCCACCTCGCTTGTTAGAGGTCAACTTTGGCTAGCTGAAGAAGCGACAAATAGCGTTGTCAGATTTCACAATGAAGGGTGCCTAATAAATAGCCTTCAGGCCCTCCGATAATGGACCATTGCAAGCATTTCTTTCTCGGAGATAGTATACCTTCTTTCAACATTATTGAGCTTTCGGTTCTCGTAAGCTATGGGGTGACCTCCTTGGGTAAGGACGCCCCCGAGAGCAAAATCTGATGCAATTGGTTTCGAATTCAAACAACATAGACACATCAACCAATCCGAGGACAGAACCCTTCATCATTGTCATCTTTAGTTCATCAAAGGTAGTTTTCAGGTCGTACCTTTCTTCAGCAACTCTATCAACGGTGCAACCCGCTTGAAAATTCTTCAATGAACTGACGGCAGTGGTTAGCCAATCCTAAGGAGCATAATTTTGTCACAGAAGTGGAAGCTCTCCATTCCTGGAGTGTAACTTATCCTCATCCATTTGAATTTTTCCATATTCAATAACGTGATCTAAAAAATTGATATGTTGTTGGCCAAAAGCATACTTCTCTTTCTTTACATATAATTGATTCTGCCAAAGCTTGTTAAACCTAATCAAAGGTGAAGAACTGAAAATCACAATGTCATCAAGATAGACTACCACAAACTGATCTAGATACTCGTGGAATACCTGGTTTATCACTTATCAGGGTGCAGAAGGTTGCAGGGGTGTTTGTCAAGCCAAAGGACATTACGAGGAACTCGAAGGTCCCATACCTTGTTATGCAAGTAGTCTTCGATTCATCCCCTTATGCTATTTGAACTTGGTAATAGGTTGATCAGAGGTCGAGCTTCGTAAAGTACTGAGCTCCATTAAATTGATCAAACAAATTGGAGGGGTACTTGTTTTGAACCGTAACTTTGTTCAAAGCTCCGTAGTCTATACACAGTCGAAATGTTCCGTCTTTCTTCTTTTGAAACAACACAAGGGCCCTATACGGCACTTTGTTGGTCTGATGAATCTGGCAGTCAACAACTCATCCAATTGTTTCTTGAGTTCAACTAACTTAGGTGGAGCCATTCAATAGGCATTATTTGCTAGGGTTTTGGCTCCTGAGACAAGTTCAATCTCGTGATCAATCCCCCATCGAGGAGGCAATGTTTTCAGCAGACCAGGTGACATTATACCAACGTATTTGTTCAGAAATTCCTGGATCTCTATTGGTATAGGATCAGCTTCAATTTGCTCATCCACCAGCAAGATAGCTATAAAAGTCGATTCCTCTTTACTAAGCCCCTTTTCCAGTGTAGGACCGAAATCATTCTCACCCACTCAGTTGCTTGATCTTTGCTTGGACCAATGTAGGATTACTGCTCGTTAATACCAGACACTGAGCCAGTTGCATGGGAATGACTTTATTTTCCAAGTGGAATTCCATACCGAGTACAACATCGAAGTCATCCGTACAAACCACTACTAAATCAACGTCTCACCTCCATTCACCTAGTTTTAGAGATACCCTTTTTGACACTCCAACAATTGGCAAAGCTTCGAATTAACAACTTTCATCTTGCCAATGCCTTTCTCGATTTTCAACTCCAACCGACACGCCCCTTTTCTGAAATGAAATTGTGAGTTCCATCTGAATCTACCATGGTGCCTTTTGTGGGTTTGGAGTTGATGACTACGTCGACAAACATGAATCCCTTTTTGAAAGCATTTTTTGGTGAGACCTTCTAAATTGGCGATAAATTTTAATGCACCCATTCGTGGAGTCTCCCCCTCATCTTCCTTTTCCACTTTAGTTTCTACCTCGGAATCGTTAGAAAACTGTACAGATGCTTGTAATGCTGTTAGCGTGCTCCAATCTAGACATTCGGCTACTCGATGGCTTTACACAAGAAGCAAGAAATTGGTCTTATTTGATTTGAACTTGACTGATGTGCCCCACGAGGAGTACTAG

mRNA sequence

ATGGTTGTAATTCTTCTAGGTCATTGGGTCTGTGAAAAAGCGAAACCAAAAAAGGCCTCATTTTTTATTGGGCCTGGAGGAGAGCGGTGGTTTAGAGCTTCCATGCCCTCAATGTGGAGAACCCAGGTGGAAGTGAACCTCTTTTCTGCCACTGAGTTAGGGGCAACGTGTTTTTTATCAGGTACTGAATATGCTGGATTTCGCTGTAATCCACACATGGTTCATCTACAATGTCATGAATGTGGAGGAATGATGCCTTCTCGATTTGATACTGGGATACCTCAACATTGTTTAGGTTGTGATAGAGCATTTTGTGGTGCATATTGGGAAGCTCAGAGTTTACAAAGAAGTGATATATACGCCACTTGCAGTCCCGAAACTTTTAAACCAATCTCCAGACGTACAATCTCAAGAATTCCACAGTTGACACATGAAAATAATCGGCATGAACAGGATATTACGGGGAGGTGCATTAGTCAGATGGGTAAAACATTGCAAGATGTCATCTCGGAATGGATTGTAAGGTTTAGCAACAGAGAAATTGTTTCTACCTCGGAATCGTTAGAAAACTGTACAGATGCTTGTAATGCTGTTAGCGTGCTCCAATCTAGACATTCGGCTACTCGATGGCTTTACACAAGAAGCAAGAAATTGGTCTTATTTGATTTGAACTTGACTGATGTGCCCCACGAGGAGTACTAG

Coding sequence (CDS)

ATGGTTGTAATTCTTCTAGGTCATTGGGTCTGTGAAAAAGCGAAACCAAAAAAGGCCTCATTTTTTATTGGGCCTGGAGGAGAGCGGTGGTTTAGAGCTTCCATGCCCTCAATGTGGAGAACCCAGGTGGAAGTGAACCTCTTTTCTGCCACTGAGTTAGGGGCAACGTGTTTTTTATCAGGTACTGAATATGCTGGATTTCGCTGTAATCCACACATGGTTCATCTACAATGTCATGAATGTGGAGGAATGATGCCTTCTCGATTTGATACTGGGATACCTCAACATTGTTTAGGTTGTGATAGAGCATTTTGTGGTGCATATTGGGAAGCTCAGAGTTTACAAAGAAGTGATATATACGCCACTTGCAGTCCCGAAACTTTTAAACCAATCTCCAGACGTACAATCTCAAGAATTCCACAGTTGACACATGAAAATAATCGGCATGAACAGGATATTACGGGGAGGTGCATTAGTCAGATGGGTAAAACATTGCAAGATGTCATCTCGGAATGGATTGTAAGGTTTAGCAACAGAGAAATTGTTTCTACCTCGGAATCGTTAGAAAACTGTACAGATGCTTGTAATGCTGTTAGCGTGCTCCAATCTAGACATTCGGCTACTCGATGGCTTTACACAAGAAGCAAGAAATTGGTCTTATTTGATTTGAACTTGACTGATGTGCCCCACGAGGAGTACTAG

Protein sequence

MVVILLGHWVCEKAKPKKASFFIGPGGERWFRASMPSMWRTQVEVNLFSATELGATCFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQRSDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFSNREIVSTSESLENCTDACNAVSVLQSRHSATRWLYTRSKKLVLFDLNLTDVPHEEY

Homology

[Close]

BLAST of CsGy4G018750 vs. NCBI nr
Match: XP_011653909.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 3.7e-68
Identity = 124/134 (92.54%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 57  CFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 116
           C   GTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR
Sbjct: 261 CPQCGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 320

Query: 117 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 176
           SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF
Sbjct: 321 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 380

Query: 177 SNREIVSTSESLEN 191
           SNREI  T   L +
Sbjct: 381 SNREIDRTRMPLNH 394

[Close]

BLAST of CsGy4G018750 vs. NCBI nr
Match: XP_004146401.2 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 3.7e-68
Identity = 124/134 (92.54%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 57  CFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 116
           C   GTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR
Sbjct: 253 CPQCGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 312

Query: 117 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 176
           SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF
Sbjct: 313 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 372

Query: 177 SNREIVSTSESLEN 191
           SNREI  T   L +
Sbjct: 373 SNREIDRTRMPLNH 386

[Close]

BLAST of CsGy4G018750 vs. NCBI nr
Match: XP_011653910.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 3.7e-68
Identity = 124/134 (92.54%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 57  CFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 116
           C   GTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR
Sbjct: 232 CPQCGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 291

Query: 117 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 176
           SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF
Sbjct: 292 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 351

Query: 177 SNREIVSTSESLEN 191
           SNREI  T   L +
Sbjct: 352 SNREIDRTRMPLNH 365

[Close]

BLAST of CsGy4G018750 vs. NCBI nr
Match: KGN54825.1 (hypothetical protein Csa_4G508530 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 4.8e-68
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 57  CFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 116
           C   GTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR
Sbjct: 253 CPQCGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 312

Query: 117 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 176
           SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF
Sbjct: 313 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 372

Query: 177 SNREI 182
           SNREI
Sbjct: 373 SNREI 377

[Close]

BLAST of CsGy4G018750 vs. NCBI nr
Match: XP_008442085.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 125/163 (76.69%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 40  RTQVEVNLFSATELGATCFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLG 99
           R +  + L  +  L   C   GTEYAGFRC+PHMVHLQCH CGGMMPSRFDTGIPQHCLG
Sbjct: 244 RPRFVLGLEESGGLELPCPQCGTEYAGFRCSPHMVHLQCHGCGGMMPSRFDTGIPQHCLG 303

Query: 100 CDRAFCGAYWEAQSLQRSDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCIS 159
           CDRAFCGAYW+AQSLQRSDIYATCSPETFKPIS RTISRIPQLTHENNRHEQDITGRCIS
Sbjct: 304 CDRAFCGAYWQAQSLQRSDIYATCSPETFKPISGRTISRIPQLTHENNRHEQDITGRCIS 363

Query: 160 QMGKTLQDVISEWIVRFSNREIVST------SESLENCTDACN 197
           QMGKTLQDVISEWIVRF+NREI  T      +E +   T  CN
Sbjct: 364 QMGKTLQDVISEWIVRFNNREIDRTRMPLNHAEMISAETPICN 406

[Close]

BLAST of CsGy4G018750 vs. TAIR10
Match: AT1G47570.1 (RING/U-box superfamily protein)

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-38
Identity = 71/137 (51.82%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 66  GFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQRSDIYATCSP 125
           G+RC  H  HLQCH C GMMP R +  +P HC GCDR FCGAYW ++++ +      C  
Sbjct: 265 GYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPFCGAYWSSENVTQGVSGPVCVR 324

Query: 126 ETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRFSNREI---- 185
           ETF+PIS RTI+RIP +THE NRHEQDIT RCI+ M KT+ DV++EW+  F+NREI    
Sbjct: 325 ETFRPISERTITRIPFITHEMNRHEQDITQRCIAHMEKTVPDVVAEWLRLFNNREIDRSR 384

Query: 186 --VSTSESLENCTDACN 197
             ++ +E++   T  CN
Sbjct: 385 MPLNHAETITASTHVCN 401

[Close]

BLAST of CsGy4G018750 vs. TrEMBL
Match: tr|A0A0A0KYR0|A0A0A0KYR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508530 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.2e-68
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 57  CFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 116
           C   GTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR
Sbjct: 253 CPQCGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 312

Query: 117 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 176
           SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF
Sbjct: 313 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 372

Query: 177 SNREI 182
           SNREI
Sbjct: 373 SNREI 377

[Close]

BLAST of CsGy4G018750 vs. TrEMBL
Match: tr|A0A1S4DUC8|A0A1S4DUC8_CUCME (E3 ubiquitin-protein ligase CHFR isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.7e-66
Identity = 122/151 (80.79%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 40  RTQVEVNLFSATELGATCFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLG 99
           R +  + L  +  L   C   GTEYAGFRC+PHMVHLQCH CGGMMPSRFDTGIPQHCLG
Sbjct: 244 RPRFVLGLEESGGLELPCPQCGTEYAGFRCSPHMVHLQCHGCGGMMPSRFDTGIPQHCLG 303

Query: 100 CDRAFCGAYWEAQSLQRSDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCIS 159
           CDRAFCGAYW+AQSLQRSDIYATCSPETFKPIS RTISRIPQLTHENNRHEQDITGRCIS
Sbjct: 304 CDRAFCGAYWQAQSLQRSDIYATCSPETFKPISGRTISRIPQLTHENNRHEQDITGRCIS 363

Query: 160 QMGKTLQDVISEWIVRFSNREIVSTSESLEN 191
           QMGKTLQDVISEWIVRF+NREI  T   L +
Sbjct: 364 QMGKTLQDVISEWIVRFNNREIDRTRMPLNH 394

[Close]

BLAST of CsGy4G018750 vs. TrEMBL
Match: tr|A0A1S3B4G1|A0A1S3B4G1_CUCME (E3 ubiquitin-protein ligase CHFR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.7e-66
Identity = 125/163 (76.69%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 40  RTQVEVNLFSATELGATCFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLG 99
           R +  + L  +  L   C   GTEYAGFRC+PHMVHLQCH CGGMMPSRFDTGIPQHCLG
Sbjct: 244 RPRFVLGLEESGGLELPCPQCGTEYAGFRCSPHMVHLQCHGCGGMMPSRFDTGIPQHCLG 303

Query: 100 CDRAFCGAYWEAQSLQRSDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCIS 159
           CDRAFCGAYW+AQSLQRSDIYATCSPETFKPIS RTISRIPQLTHENNRHEQDITGRCIS
Sbjct: 304 CDRAFCGAYWQAQSLQRSDIYATCSPETFKPISGRTISRIPQLTHENNRHEQDITGRCIS 363

Query: 160 QMGKTLQDVISEWIVRFSNREIVST------SESLENCTDACN 197
           QMGKTLQDVISEWIVRF+NREI  T      +E +   T  CN
Sbjct: 364 QMGKTLQDVISEWIVRFNNREIDRTRMPLNHAEMISAETPICN 406

[Close]

BLAST of CsGy4G018750 vs. TrEMBL
Match: tr|A0A1S3B4V7|A0A1S3B4V7_CUCME (E3 ubiquitin-protein ligase CHFR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.7e-66
Identity = 125/163 (76.69%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 40  RTQVEVNLFSATELGATCFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLG 99
           R +  + L  +  L   C   GTEYAGFRC+PHMVHLQCH CGGMMPSRFDTGIPQHCLG
Sbjct: 236 RPRFVLGLEESGGLELPCPQCGTEYAGFRCSPHMVHLQCHGCGGMMPSRFDTGIPQHCLG 295

Query: 100 CDRAFCGAYWEAQSLQRSDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCIS 159
           CDRAFCGAYW+AQSLQRSDIYATCSPETFKPIS RTISRIPQLTHENNRHEQDITGRCIS
Sbjct: 296 CDRAFCGAYWQAQSLQRSDIYATCSPETFKPISGRTISRIPQLTHENNRHEQDITGRCIS 355

Query: 160 QMGKTLQDVISEWIVRFSNREIVST------SESLENCTDACN 197
           QMGKTLQDVISEWIVRF+NREI  T      +E +   T  CN
Sbjct: 356 QMGKTLQDVISEWIVRFNNREIDRTRMPLNHAEMISAETPICN 398

[Close]

BLAST of CsGy4G018750 vs. TrEMBL
Match: tr|A0A2P2K0U1|A0A2P2K0U1_RHIMU (Zinc finger family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 98/146 (67.12%), Postives = 108/146 (73.97%), Query Frame = 0


Query: 57  CFLSGTEYAGFRCNPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQR 116
           C   GTE  GFRCN + VHLQCH CGGMMPSR +  +PQHCLGCDRAFCGAYW AQ L R
Sbjct: 162 CPQCGTELCGFRCNQNTVHLQCHACGGMMPSRTNNNVPQHCLGCDRAFCGAYWHAQRLSR 221

Query: 117 SDIYATCSPETFKPISRRTISRIPQLTHENNRHEQDITGRCISQMGKTLQDVISEWIVRF 176
           SD +  CS ETFKPIS RTISRIP L HE NRHEQDIT RCI QMG+TLQDVIS+WIV+F
Sbjct: 222 SDFHVVCSHETFKPISERTISRIPFLAHETNRHEQDITERCIRQMGRTLQDVISDWIVKF 281

Query: 177 SNREIVST------SESLENCTDACN 197
           +NREI  T      +E +   T  CN
Sbjct: 282 NNREIDRTRMPLNHAEMVTASTHVCN 307

The following BLAST results are available for this feature:

BLAST of CsGy4G018750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653909.1	3.7e-68	92.54	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus]	[more]
XP_004146401.2	3.7e-68	92.54	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]	[more]
XP_011653910.1	3.7e-68	92.54	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus]	[more]
KGN54825.1	4.8e-68	97.60	hypothetical protein Csa_4G508530 [Cucumis sativus]	[more]
XP_008442085.1	1.3e-65	76.69	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]	[more]

BLAST of CsGy4G018750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47570.1	2.8e-38	51.82	RING/U-box superfamily protein	[more]

BLAST of CsGy4G018750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G018750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYR0\|A0A0A0KYR0_CUCSA	3.2e-68	97.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508530 PE=4 SV=1	[more]
tr\|A0A1S4DUC8\|A0A1S4DUC8_CUCME	8.7e-66	80.79	E3 ubiquitin-protein ligase CHFR isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|A0A1S3B4G1\|A0A1S3B4G1_CUCME	8.7e-66	76.69	E3 ubiquitin-protein ligase CHFR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|A0A1S3B4V7\|A0A1S3B4V7_CUCME	8.7e-66	76.69	E3 ubiquitin-protein ligase CHFR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|A0A2P2K0U1\|A0A2P2K0U1_RHIMU	1.4e-50	67.12	Zinc finger family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G018750.1	CsGy4G018750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.40.140		coord: 28..115 e-value: 2.0E-6 score: 30.6
None	No IPR available	PANTHER	PTHR16079	UBIQUITIN LIGASE PROTEIN CHFR	coord: 59..191

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G018750	Csa4G508530	Cucumber (Chinese Long) v2	cgybcuB173
CsGy4G018750	CSPI04G20100	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G018750	CmoCh03G000020	Cucurbita moschata (Rifu)	cgybcmoB511
CsGy4G018750	Lsi01G020630	Bottle gourd (USVL1VR-Ls)	cgyblsiB238
CsGy4G018750	Cp4.1LG10g12220	Cucurbita pepo (Zucchini)	cgybcpeB465
CsGy4G018750	MELO3C033099.2	Melon (DHL92) v3.6.1	cgybmedB285
CsGy4G018750	CsaV3_4G030320	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G018750	Cla97C04G069990	Watermelon (97103) v2	cgybwmbB283
CsGy4G018750	Carg26096	Silver-seed gourd	carcgybB0521

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G018750	Watermelon (97103) v2	cgybwmbB288
CsGy4G018750	Wax gourd	cgybwgoB375
CsGy4G018750	Cucurbita maxima (Rimu)	cgybcmaB530
CsGy4G018750	Cucurbita maxima (Rimu)	cgybcmaB564
CsGy4G018750	Cucurbita maxima (Rimu)	cgybcmaB570
CsGy4G018750	Cucurbita moschata (Rifu)	cgybcmoB504
CsGy4G018750	Cucurbita moschata (Rifu)	cgybcmoB539
CsGy4G018750	Cucurbita moschata (Rifu)	cgybcmoB544
CsGy4G018750	Cucurbita pepo (Zucchini)	cgybcpeB525
CsGy4G018750	Melon (DHL92) v3.5.1	cgybmeB285
CsGy4G018750	Watermelon (Charleston Gray)	cgybwcgB283
CsGy4G018750	Watermelon (97103) v1	cgybwmB316
CsGy4G018750	Silver-seed gourd	carcgybB0482