CsGy4G013150 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G013150
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
Location	Chr4 : 18303607 .. 18304315 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAACTCTTCAATACATTATAGGTCAAACCAAGCTTCGTTTGCGTATCAAAAGTCATTTATTCATAGAAATGTTGAACCTGTATTAGTCCATCTACATCAAGGGTTAAAACCAAATCCTTCTCATATTGGTTTCACCAATAATCTCAGTGTTGTTAAAGAGTCATCCTTTGCTATGACTTCCATCAACAGGCCAATTTCAATCAAAGTCGTGGTTACAATCAAACAGTGCATCAATGATTTGTTTCCACATTTTGGGTTCAAACCAAGGCTCGACCATATCACTAATTGGTGGCCAAGTCAAGCTCTTGGTTTGGAGTTTATTAGCAATGAGATGGATCCAAGTATGTTAATTTACTTAGCTTTATATATCAATGTTTTTATATTTAAGACATAGATAATTTAGACTTCATATATATATAATGTATTGATCAGCAACAGGATTGGAGAAGGGAACAACAAAAGCTTATGCAGAGAGAGTGAAGAGAAAGGATAACGAGGTAATTGTGTATGAGACAAAGGTGGTAATTCCAGCAGATTTTGGTGCAATTGGAGGAGTTTTGGTTGAGAATGAACACAACAAAGAGATGTTTCTTATGGACATTGTGATTCATGGAATTCCAACACAATATCATCTTCATTTCCCATGCAATTCTTGGATTCAGAGCAAAGATAGAAGAATCTTCTTCACCACTAAGGTCATTTAA

mRNA sequence

ATGCTAAACTCTTCAATACATTATAGGTCAAACCAAGCTTCGTTTGCGTATCAAAAGTCATTTATTCATAGAAATGTTGAACCTGTATTAGTCCATCTACATCAAGGGTTAAAACCAAATCCTTCTCATATTGGTTTCACCAATAATCTCAGTGTTGTTAAAGAGTCATCCTTTGCTATGACTTCCATCAACAGGCCAATTTCAATCAAAGTCGTGGTTACAATCAAACAGTGCATCAATGATTTGTTTCCACATTTTGGGTTCAAACCAAGGCTCGACCATATCACTAATTGGTGGCCAAGTCAAGCTCTTGGTTTGGAGTTTATTAGCAATGAGATGGATCCAACAACAGGATTGGAGAAGGGAACAACAAAAGCTTATGCAGAGAGAGTGAAGAGAAAGGATAACGAGGTAATTGTGTATGAGACAAAGGTGGTAATTCCAGCAGATTTTGGTGCAATTGGAGGAGTTTTGGTTGAGAATGAACACAACAAAGAGATGTTTCTTATGGACATTGTGATTCATGGAATTCCAACACAATATCATCTTCATTTCCCATGCAATTCTTGGATTCAGAGCAAAGATAGAAGAATCTTCTTCACCACTAAGGTCATTTAA

Coding sequence (CDS)

ATGCTAAACTCTTCAATACATTATAGGTCAAACCAAGCTTCGTTTGCGTATCAAAAGTCATTTATTCATAGAAATGTTGAACCTGTATTAGTCCATCTACATCAAGGGTTAAAACCAAATCCTTCTCATATTGGTTTCACCAATAATCTCAGTGTTGTTAAAGAGTCATCCTTTGCTATGACTTCCATCAACAGGCCAATTTCAATCAAAGTCGTGGTTACAATCAAACAGTGCATCAATGATTTGTTTCCACATTTTGGGTTCAAACCAAGGCTCGACCATATCACTAATTGGTGGCCAAGTCAAGCTCTTGGTTTGGAGTTTATTAGCAATGAGATGGATCCAACAACAGGATTGGAGAAGGGAACAACAAAAGCTTATGCAGAGAGAGTGAAGAGAAAGGATAACGAGGTAATTGTGTATGAGACAAAGGTGGTAATTCCAGCAGATTTTGGTGCAATTGGAGGAGTTTTGGTTGAGAATGAACACAACAAAGAGATGTTTCTTATGGACATTGTGATTCATGGAATTCCAACACAATATCATCTTCATTTCCCATGCAATTCTTGGATTCAGAGCAAAGATAGAAGAATCTTCTTCACCACTAAGGTCATTTAA

Protein sequence

MLNSSIHYRSNQASFAYQKSFIHRNVEPVLVHLHQGLKPNPSHIGFTNNLSVVKESSFAMTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPTQYHLHFPCNSWIQSKDRRIFFTTKVI

Homology

[Close]

BLAST of CsGy4G013150 vs. NCBI nr
Match: XP_016900734.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 3.2e-100
Identity = 181/205 (88.29%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MLNSSIHYRSNQASFAYQKSFIHRNVEPVLVHLHQGLKPNPSHIGFTNNLSVVKESSFAM 60
           MLNSSI YRSNQASFAYQK FIHRN E + +HL QG KPN S IG TNNLSVVKESSFAM
Sbjct: 1   MLNSSILYRSNQASFAYQKPFIHRNFEVLSLHLDQGFKPNASRIGSTNNLSVVKESSFAM 60

Query: 61  TSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGLE 120
           TSINRPIS+KVVVTIK+CIN+LFPHFGFKPRLDHITNWW SQAL LEFIS EMDPTTGLE
Sbjct: 61  TSINRPISVKVVVTIKRCINELFPHFGFKPRLDHITNWWTSQALRLEFISVEMDPTTGLE 120

Query: 121 KGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPTQ 180
           KGTTKAYAE+VKR+DNEVIVYETKVV+PADFGAIGGVLVENE NKE+FLMDIVIHGIPTQ
Sbjct: 121 KGTTKAYAEKVKREDNEVIVYETKVVLPADFGAIGGVLVENERNKELFLMDIVIHGIPTQ 180

Query: 181 YHLHFPCNSWIQSKDRRIFFTTKVI 206
           YHLHFPCNSWIQSKD+RIFFTTKVI
Sbjct: 181 YHLHFPCNSWIQSKDKRIFFTTKVI 205

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BLAST of CsGy4G013150 vs. NCBI nr
Match: KGN54139.1 (hypothetical protein Csa_4G288100 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 60  MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL 119
           MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL
Sbjct: 1   MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL 60

Query: 120 EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT 179
           EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT
Sbjct: 61  EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT 120

Query: 180 QYHLHFPCNSWIQSKDRRIFFTTKVI 206
           QYHLHFPCNSWIQSKDRRIFFTTKVI
Sbjct: 121 QYHLHFPCNSWIQSKDRRIFFTTKVI 146

[Close]

BLAST of CsGy4G013150 vs. NCBI nr
Match: XP_004142235.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 60  MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL 119
           MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL
Sbjct: 1   MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL 60

Query: 120 EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT 179
           EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT
Sbjct: 61  EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT 120

Query: 180 QYHLHFPCNSWIQSKDRRIFFTTK 204
           QYHLHFPCNSWIQSKDRRIFFTTK
Sbjct: 121 QYHLHFPCNSWIQSKDRRIFFTTK 144

[Close]

BLAST of CsGy4G013150 vs. NCBI nr
Match: XP_022958530.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 115/213 (53.99%), Postives = 141/213 (66.20%), Query Frame = 0


Query: 1   MLN-SSIHYR-SNQAS-FAYQKSFIHRNVEPVLVHLHQGLKPNPSHIGFTNNLSVVKESS 60
           MLN   +HYR SNQA+ F YQK  +  NV+  +   H    P  S + FT+  +V+K S+
Sbjct: 1   MLNHPPLHYRCSNQATWFLYQKPLLPGNVDACVSLQHSLTPPAASPLRFTSP-NVIKPSA 60

Query: 61  --FAMTSINRPISIK-VVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMD 120
              ++ SI  P+  K VV T+++ I+ LFP FGF  RL  I N   S+ L LE +S +MD
Sbjct: 61  VHVSVPSIQSPVYTKAVVTTVQRPIHQLFPKFGFIGRLHDIIN-RRSRVLALELLSADMD 120

Query: 121 PTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVI 180
           PTTGLEKG  KAY ++VKR+D+E I+YE   VIPADFG IG VLVEN H KE+FL DIVI
Sbjct: 121 PTTGLEKGRMKAYEQKVKREDDE-IIYEISFVIPADFGPIGAVLVENMHKKEVFLKDIVI 180

Query: 181 HGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           HGIPT   LHF CNSWI SK    DRRIFFTTK
Sbjct: 181 HGIPTG-PLHFSCNSWITSKAQCNDRRIFFTTK 209

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BLAST of CsGy4G013150 vs. NCBI nr
Match: XP_023533000.1 (LOW QUALITY PROTEIN: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 115/213 (53.99%), Postives = 141/213 (66.20%), Query Frame = 0


Query: 1   MLN-SSIHYR-SNQAS-FAYQKSFIHRNVEPVLVHLHQGLKPNPSHIGFTNNLSVVKESS 60
           MLN   +HYR SNQA+ F YQK  +  NV+  +   H    P  S + FT+  +V+K S+
Sbjct: 1   MLNHPPLHYRCSNQATWFLYQKPLLPGNVDACVSLQHSLTPPAASPLRFTSP-NVIKPSA 60

Query: 61  --FAMTSINRPISIK-VVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMD 120
              ++ SI  P+  K VV T+++ I+ LFP FGF  RL  I N   S+ L LE +S +MD
Sbjct: 61  VHVSVPSIQSPVYTKAVVTTVQRPIHQLFPKFGFIGRLHDIIN-RRSRVLALELLSADMD 120

Query: 121 PTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVI 180
           PTTGLEKG  KAY ++VKR+D+E I+YE   VIPADFG IG VLVEN H KE+FL DIVI
Sbjct: 121 PTTGLEKGRMKAYEQKVKREDDE-IIYEISFVIPADFGPIGAVLVENMHKKEVFLKDIVI 180

Query: 181 HGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           HGIPT   LHF CNSWI SK    DRRIFFTTK
Sbjct: 181 HGIPTG-PLHFSCNSWITSKAQCNDRRIFFTTK 209

[Close]

BLAST of CsGy4G013150 vs. TAIR10
Match: AT1G17420.1 (lipoxygenase 3)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-14
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 106 LEFISNEMDPTTGLEKGTTKAYAERVKRKDN---EVIVYETKVVIPADFGAIGGVLVENE 165
           LE IS ++DP T L K +  A  +   +K     E + Y  +  + A FG+ G + V N+
Sbjct: 121 LELISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAERVHYTAEFTVDAAFGSPGAITVMNK 180

Query: 166 HNKEMFLMDIVIHGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           H KE FL  I I G      +HFPCNSW+QS+    D+RIFFT +
Sbjct: 181 HQKEFFLESITIEGFALG-PVHFPCNSWVQSQKDHPDKRIFFTNQ 224

[Close]

BLAST of CsGy4G013150 vs. TAIR10
Match: AT1G72520.1 (PLAT/LH2 domain-containing lipoxygenase family protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 106 LEFISNEMDPTTGLEKGTTKAYAERVKRKDN---EVIVYETKVVIPADFGAIGGVLVENE 165
           LE +S ++DP T   K +  A  +   +K N   E + Y  +  + + FG+ G + V N+
Sbjct: 127 LELMSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAERVHYTAEFTVDSAFGSPGAITVTNK 186

Query: 166 HNKEMFLMDIVIHGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           H KE FL  I I G      +HFPCNSW+QS+     +RI FT +
Sbjct: 187 HQKEFFLESITIEGFACG-PVHFPCNSWVQSQKDHPSKRILFTNQ 230

[Close]

BLAST of CsGy4G013150 vs. Swiss-Prot
Match: sp|O24370|LOX21_SOLTU (Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-19
Identity = 57/160 (35.62%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 48  NNLSVVKESSFAMTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLE 107
           +N +    +   ++S  +   +K VVT+++ +N           LD I +    ++L L 
Sbjct: 51  HNYNGASTTKAVLSSTEKATGVKAVVTVQKQVN-----LNLSRGLDDIGDLL-GKSLLLW 110

Query: 108 FISNEMDPTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEM 167
            ++ E+D  TG+EK   +AYA R +  D +   YE   VIP DFG +G +L+ENEH+KEM
Sbjct: 111 IVAAELDHKTGIEKPGIRAYAHRGRDVDGDT-HYEADFVIPQDFGEVGAILIENEHHKEM 170

Query: 168 FLMDIVIHGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           ++ +IVI G      +   CNSW+ SK    D+RIFFT K
Sbjct: 171 YVKNIVIDGF-VHGKVEITCNSWVHSKFDNPDKRIFFTNK 202

[Close]

BLAST of CsGy4G013150 vs. Swiss-Prot
Match: sp|P38419|LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 9.8e-16
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 102 QALGLEFISNEMDPTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVEN 161
           ++L LE +S+E+D  TG EK T ++YA  V   D+ V+ YE    +P+ FG IG ++V N
Sbjct: 112 RSLSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTN 171

Query: 162 EHNKEMFLMDIVI---HGIPTQYHLHFPCNSWIQSK--------DRRIFFTTK 204
           E  +EMFL DI +    G      L   CNSW+Q K         +RIFF  K
Sbjct: 172 ELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANK 224

[Close]

BLAST of CsGy4G013150 vs. Swiss-Prot
Match: sp|Q84YK8|LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 67  ISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGLEKGTTKA 126
           + +K V TIK  +  L         +D+I +    ++L LE +S+E++  TG +K T  +
Sbjct: 96  VKVKAVATIKVTVEGLLNSLRPSKAIDNIRD-LIGRSLFLELVSSELEAKTGKKKATVHS 155

Query: 127 YAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVI---HGIPTQYHL 186
           YA +V   D+ V+ YE    +P  FG IG V+V NE  +EMFL D+ +    G      L
Sbjct: 156 YAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVL 215

Query: 187 HFPCNSWIQSKD--------RRIFF 201
              CNSW+Q K         +RIFF
Sbjct: 216 PIRCNSWVQPKSSIDEGTPGKRIFF 239

[Close]

BLAST of CsGy4G013150 vs. Swiss-Prot
Match: sp|Q8GSM2|LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare OX=4513 GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-15
Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 57  SFAMTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPT 116
           S ++T+  R +++  +VT  Q    ++   G    LD I + +  + L LE +S+E+DP 
Sbjct: 60  STSVTTKERALTVTAIVT-AQVPTSVYVARG----LDDIQDLF-GKTLLLELVSSELDPK 119

Query: 117 TGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDI-VIH 176
           TG E+   K +A    ++      YE K+ +PA FG +G VLVENEH++EMF+ DI +I 
Sbjct: 120 TGRERERVKGFAHMTLKEG----TYEAKMSVPASFGPVGAVLVENEHHREMFIKDIKLIT 179

Query: 177 GIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           G      + F   SW+ SK    + R FFT K
Sbjct: 180 GGDESTAITFDVASWVHSKFDDPEPRAFFTVK 201

[Close]

BLAST of CsGy4G013150 vs. Swiss-Prot
Match: sp|Q9LNR3|LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX3 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-13
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 106 LEFISNEMDPTTGLEKGTTKAYAERVKRKDN---EVIVYETKVVIPADFGAIGGVLVENE 165
           LE IS ++DP T L K +  A  +   +K     E + Y  +  + A FG+ G + V N+
Sbjct: 121 LELISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAERVHYTAEFTVDAAFGSPGAITVMNK 180

Query: 166 HNKEMFLMDIVIHGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           H KE FL  I I G      +HFPCNSW+QS+    D+RIFFT +
Sbjct: 181 HQKEFFLESITIEGFALG-PVHFPCNSWVQSQKDHPDKRIFFTNQ 224

[Close]

BLAST of CsGy4G013150 vs. TrEMBL
Match: tr|A0A1S4DXM1|A0A1S4DXM1_CUCME (linoleate 13S-lipoxygenase 2-1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107991006 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.1e-100
Identity = 181/205 (88.29%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MLNSSIHYRSNQASFAYQKSFIHRNVEPVLVHLHQGLKPNPSHIGFTNNLSVVKESSFAM 60
           MLNSSI YRSNQASFAYQK FIHRN E + +HL QG KPN S IG TNNLSVVKESSFAM
Sbjct: 1   MLNSSILYRSNQASFAYQKPFIHRNFEVLSLHLDQGFKPNASRIGSTNNLSVVKESSFAM 60

Query: 61  TSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGLE 120
           TSINRPIS+KVVVTIK+CIN+LFPHFGFKPRLDHITNWW SQAL LEFIS EMDPTTGLE
Sbjct: 61  TSINRPISVKVVVTIKRCINELFPHFGFKPRLDHITNWWTSQALRLEFISVEMDPTTGLE 120

Query: 121 KGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPTQ 180
           KGTTKAYAE+VKR+DNEVIVYETKVV+PADFGAIGGVLVENE NKE+FLMDIVIHGIPTQ
Sbjct: 121 KGTTKAYAEKVKREDNEVIVYETKVVLPADFGAIGGVLVENERNKELFLMDIVIHGIPTQ 180

Query: 181 YHLHFPCNSWIQSKDRRIFFTTKVI 206
           YHLHFPCNSWIQSKD+RIFFTTKVI
Sbjct: 181 YHLHFPCNSWIQSKDKRIFFTTKVI 205

[Close]

BLAST of CsGy4G013150 vs. TrEMBL
Match: tr|A0A0A0KZ97|A0A0A0KZ97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288100 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 8.4e-81
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 60  MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL 119
           MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL
Sbjct: 1   MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGL 60

Query: 120 EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT 179
           EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT
Sbjct: 61  EKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPT 120

Query: 180 QYHLHFPCNSWIQSKDRRIFFTTKVI 206
           QYHLHFPCNSWIQSKDRRIFFTTKVI
Sbjct: 121 QYHLHFPCNSWIQSKDRRIFFTTKVI 146

[Close]

BLAST of CsGy4G013150 vs. TrEMBL
Match: tr|A0A2P4JDM9|A0A2P4JDM9_QUESU (Lipoxygenase OS=Quercus suber OX=58331 GN=CFP56_59405 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 75/209 (35.89%), Postives = 113/209 (54.07%), Query Frame = 0


Query: 1   MLNSSIHY-RSNQASFAYQKSFIHRNVEPVL-VHLHQGLKPNPSHIGFTNNLSVVKESSF 60
           ML   +H   S +  F   K FIH N+   L + +H   + +   +    N + +K  + 
Sbjct: 1   MLKPQLHLSNSTKVPFLLHKPFIHGNLNASLPISMHSFCRKHKHSVRVGFNPNNIKAQAV 60

Query: 61  AMTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTG 120
           A +S  + +S+K +VT+K  +     + G    LD I +    + L LE I  E+DP TG
Sbjct: 61  A-SSTEKSVSVKAIVTVKPTVGGFLTNLGIDRGLDDIQDVL-GKTLLLELIQAELDPKTG 120

Query: 121 LEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIP 180
           LEK T K YA R K ++N V+ YE+   +P DFG IG V VENEH+ EM+L DI++ G  
Sbjct: 121 LEKETIKGYAHRTKGEENGVVKYESSFEVPVDFGEIGAVYVENEHHNEMYLQDIILDGF- 180

Query: 181 TQYHLHFPCNSWIQSK----DRRIFFTTK 204
           +   ++  CNSW+ SK     +R+FF+ K
Sbjct: 181 SNGPVYVTCNSWVHSKYDNPQKRVFFSNK 206

[Close]

BLAST of CsGy4G013150 vs. TrEMBL
Match: tr|A0A2N9GKV6|A0A2N9GKV6_FAGSY (Lipoxygenase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30969 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 77/212 (36.32%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 1   MLNSSIHY-RSNQASFAYQKSFIHRNVE---PVLVH-LHQGLKPNPSHIGFTNNLSVVKE 60
           ML   +H+  S Q  F   K FIH N     P+ +H      K N   + F+N+ ++   
Sbjct: 1   MLKPQLHHSNSTQIPFLLHKPFIHGNGNASFPISMHSFRTKNKQNVRVVRFSNSSNIKAV 60

Query: 61  SSFAMTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDP 120
           +S    S  + +S+K VVT+K+ +   F + G +  LD I +    + L LE +  E+DP
Sbjct: 61  AS----STEKYVSVKAVVTVKRTVTGFFSNLGIERGLDDIKDLL-DKTLLLELVHTELDP 120

Query: 121 TTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIH 180
            TGLEK T K YA R   ++ +V+ YE+   +P DFG +G + VENEH+ EM+L DIV+ 
Sbjct: 121 KTGLEKETIKGYAHRTS-QEKDVVKYESSFEVPIDFGEVGAIFVENEHHTEMYLQDIVLD 180

Query: 181 GIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           G      +H  CNSW+ SK     +R+FF+ K
Sbjct: 181 GF-ANGPVHVNCNSWVHSKYDNPQKRVFFSNK 205

[Close]

BLAST of CsGy4G013150 vs. TrEMBL
Match: tr|A0A200Q875|A0A200Q875_9MAGN (Lipoxygenase OS=Macleaya cordata OX=56857 GN=BVC80_8919g24 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 71/171 (41.52%), Postives = 102/171 (59.65%), Query Frame = 0


Query: 38  KPNPSHI-GFTNNLSVVKESSFAMTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHIT 97
           KPN  H+   +NN+     +S   T+  + I +K +VT+K  +  +  + G    LD IT
Sbjct: 44  KPNGGHVKSISNNI----RASVTKTTTEKAIKVKGIVTVKMTVGGILSNLGLTRALDDIT 103

Query: 98  NWWPSQALGLEFISNEMDPTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGG 157
           +    +++ +E +S+E+DP TG EK T K YAE V +KD EV  YE + ++PA FG IG 
Sbjct: 104 D-LARKSMLIELVSSEVDPKTGKEKETIKDYAEWVSQKDQEV-KYECEFMVPASFGEIGA 163

Query: 158 VLVENEHNKEMFLMDIVIHGIPTQYHLHFPCNSWIQSK----DRRIFFTTK 204
           VLV+NEH+KE F  DIV +G+P       PC+SW+ SK    D+RIFF  K
Sbjct: 164 VLVQNEHHKEAFFKDIVFNGLPGG-PFTIPCDSWVHSKFDNPDKRIFFANK 207

The following BLAST results are available for this feature:

BLAST of CsGy4G013150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900734.1	3.2e-100	88.29	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo]	[more]
KGN54139.1	1.3e-80	100.00	hypothetical protein Csa_4G288100 [Cucumis sativus]	[more]
XP_004142235.1	1.1e-79	100.00	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]	[more]
XP_022958530.1	2.4e-42	53.99	linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023533000.1	2.4e-42	53.99	LOW QUALITY PROTEIN: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbi...	[more]

BLAST of CsGy4G013150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17420.1	3.3e-14	40.00	lipoxygenase 3	[more]
AT1G72520.1	4.0e-12	36.19	PLAT/LH2 domain-containing lipoxygenase family protein	[more]

BLAST of CsGy4G013150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O24370\|LOX21_SOLTU	4.3e-19	35.63	Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LO...	[more]
sp\|P38419\|LOXC1_ORYSJ	9.8e-16	39.82	Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CM-LOX...	[more]
sp\|Q84YK8\|LOXC2_ORYSJ	2.2e-15	34.48	Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q8GSM2\|LOX23_HORVU	6.4e-15	35.53	Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare OX=4513 GN=LOX2.3 PE=1 SV=1	[more]
sp\|Q9LNR3\|LOX3_ARATH	5.9e-13	40.00	Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX3 PE=2 SV=1	[more]

BLAST of CsGy4G013150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DXM1\|A0A1S4DXM1_CUCME	2.1e-100	88.29	linoleate 13S-lipoxygenase 2-1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KZ97\|A0A0A0KZ97_CUCSA	8.4e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288100 PE=4 SV=1	[more]
tr\|A0A2P4JDM9\|A0A2P4JDM9_QUESU	9.2e-27	35.89	Lipoxygenase OS=Quercus suber OX=58331 GN=CFP56_59405 PE=3 SV=1	[more]
tr\|A0A2N9GKV6\|A0A2N9GKV6_FAGSY	2.7e-26	36.32	Lipoxygenase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30969 PE=3 SV=1	[more]
tr\|A0A200Q875\|A0A200Q875_9MAGN	2.7e-26	41.52	Lipoxygenase OS=Macleaya cordata OX=56857 GN=BVC80_8919g24 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR036392	PLAT/LH2_dom_sf
IPR000907	LipOase
IPR001024	PLAT/LH2_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0072330	monocarboxylic acid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0051707	response to other organism
cellular_component	GO:0044434	chloroplast part
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G013150.1	CsGy4G013150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001024	PLAT/LH2 domain	SMART	SM00308	LH2_4	coord: 67..202 e-value: 7.3E-13 score: 58.7
IPR001024	PLAT/LH2 domain	PFAM	PF01477	PLAT	coord: 142..200 e-value: 6.5E-6 score: 26.6
IPR001024	PLAT/LH2 domain	PROSITE	PS50095	PLAT	coord: 84..205 score: 11.714
None	No IPR available	GENE3D	G3DSA:2.60.60.20		coord: 70..205 e-value: 1.8E-23 score: 85.0
None	No IPR available	PANTHER	PTHR11771:SF65	SUBFAMILY NOT NAMED	coord: 16..203
IPR000907	Lipoxygenase	PANTHER	PTHR11771	LIPOXYGENASE	coord: 16..203
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	SSF49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 69..203

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G013150	Cla008519	Watermelon (97103) v1	cgybwmB323
CsGy4G013150	Csa4G288100	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G013150	MELO3C014628	Melon (DHL92) v3.5.1	cgybmeB249
CsGy4G013150	ClCG02G023570	Watermelon (Charleston Gray)	cgybwcgB272
CsGy4G013150	CSPI04G13540	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G013150	Lsi10G010290	Bottle gourd (USVL1VR-Ls)	cgyblsiB232
CsGy4G013150	Cp4.1LG05g05220	Cucurbita pepo (Zucchini)	cgybcpeB561
CsGy4G013150	Cla97C02G049640	Watermelon (97103) v2	cgybwmbB273
CsGy4G013150	Bhi10G000286	Wax gourd	cgybwgoB373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G013150	Cucurbita maxima (Rimu)	cgybcmaB525
CsGy4G013150	Cucurbita maxima (Rimu)	cgybcmaB522
CsGy4G013150	Cucurbita moschata (Rifu)	cgybcmoB493
CsGy4G013150	Cucurbita moschata (Rifu)	cgybcmoB496
CsGy4G013150	Cucurbita pepo (Zucchini)	cgybcpeB496
CsGy4G013150	Bottle gourd (USVL1VR-Ls)	cgyblsiB234
CsGy4G013150	Melon (DHL92) v3.6.1	cgybmedB247
CsGy4G013150	Watermelon (97103) v1	cgybwmB325
CsGy4G013150	Silver-seed gourd	carcgybB0529
CsGy4G013150	Silver-seed gourd	carcgybB0909
CsGy4G013150	Cucumber (Chinese Long) v3	cgybcucB171