CsGy4G006440 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G006440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPutative E3 ubiquitin-protein ligase MARCH10
LocationChr4 : 4642118 .. 4649073 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTATATCATCCCAAAAGAAAAAAGAATAATAATAATAATAAAATAATTACAACAGTTGTTTACGGTTTCGTTTCTGCCACAGCTTCTCTCTCAAAGGCAACCAATTAGAAAATCAGAAATTTGAAGTTTTGTAAACAAAAACCACAAATTCTTTGAGCCGCTCATTAGGCCGGAATCAAATATCTTGTTGCTCTGTGTGCCGCTCCTCTTCCACTGTCCACCACGCACCCACAAAATGGGAACTTCTCTTCTCTCAGTTCCTGCCCCATTCTTCCACTCCTCCCATCGTTCCCGATTCACCACTTCATTCCCATTTTCATCATCTAGACCCAGCCCCTTCCTCTCTTCTTCCTCCTCCTCCTCTTCTTCATCTTCGGTTGTTGATGAAGAACTCAATTCTTCTTCCCCAGATCAACTCTCTCTTCAATCTGAATCTGACCCAGATGATTCTTCCTTCAGGTATTGTTTATATTCATTCTTTTTCTCTATATCTTCAACTCACTCTGATTCTGATGTTATATGGGTTGCGTTGTCGAATGGAATGAAAACTTTATATTATGCTGTTTAGATTTCTGTTTCTACTTGGGAGTAATATGTGGGGCATCGTTTGCGTTGTACTATGAGAACTCTGTTAGAAGCAAATTTTTCTTTAAATTTTTAGCTTGCCCCTTAGCTATTATAACCCATGCCCTTGCTCATGCTCTAGTTGATGGGTCAGATAGATTTGCCAATTTTCCATGCCATTTCTAGAAAATGGTTAAACAAACATGATGTGGCAGGAACTGTATGACCTCTAGGCTTCCATTGGTCGTACTAAATCATATTGGTGTAATTAGTTGAGAAACAAGCTGACACTGGACAAGACTTGGCTCAACTATGAAAATCACTAGTACCCCATTTTGCTCGTTCCAATTGAAGGCCATGTATTTTGGTGTGTAACTGATGTGATTTTAATGAGCCCTATAATGCATATTGCAAACTAGTTGAAAGTTTCAATTCTAAGTGTTCTTCTTACTATCGATCTGGATGTATGTTTTCAAGTCATTTTCTCTTCAGATATTATAGTAATGGGGGTCAATATTATGACTTAGAACGAGTTGTGTTTGTGTTTCATTTCTTATAAATAGAGGATGTAAGGCTTGTGGAAAGGAAGAAATTGAGAGGGGATGCAATGGTGAGGGAAGGATGCAAGGTGGAATTGCAACAGTCCCTGGTTTTGGTTGGTGGCCTATAAAGGCATACAGGCCTTGTCCTGGATTTGTAGCATCAGGTGGCAGATACAAGCGGCGTGGACAAAGCATGGACGAGGTTACATCTGGAGGAGGGAGGACCGATGCCTCTGCTAGTGTTGGTAGAAAGGACTCGTCGAGGTACAATCCTGCGATCTCTTTTTTGACTTAAATTCTTATCTTTATGTCCCTTTTGGAGTTCATACTACTGCAGTCTAACATTCTTCCTGCGTACCGAACTTTCAAAATAACCAAACCAAATGCTTGATTCCAATTCAGTGTACTTGCTATAAATGATTGTTTGGAATGACTTTTCAAGAATTTATGGTTTCTTGTTATGACTAGGAACTCTTAGAAAAGTTATTTGACAATTGCTACGGTATAACTAGTCTGTATACTTTAGGATAGATGACTCAAATTTATGTCCATTGTTTATTAGCAGACATGCAAATTTTTAAATCTATGTCAAATGGTTGTAAGTTATTACGGGACAATTGTGCGCTTGCTGACCCTCCGTTCTATTGCTCTTTGTATAACCTTAATGTACATTGAGTTTGTCTCTCTATTTTTCAATATTAATAATAGTGAGACTCATATCGTTTTCAAAAAAATAAGAAAAAAGTTATTACGAGGCAACCACATTGGATAGTGTTAGAATTAGTGGGCTTGTTGTATGTAGAAAGCCCAAATGTTTTTTAGTCTTTTATGTTGCCCTAATTATCTTTCATTATTTTAATAGGCTTCTATTGCCTATAAATTAATTTTATAATGCTCCCCTATATCATTAATTTTATAAGTAAAATTATAAGAAAGATTTGCACTGTTGTTTTTCTCCCTGAACTTTCCACATAAAACTTGTGTTTGTTCTTCGTCTCTATTTTCAATATGGTATCAAAGCATGGTATTGACCGAACGCTAGACATCAAAACTCTTTGGAAACCAAACAGAGGAGACAGCTGCCAGTATCAGTACCGCTGTCCCCACCGCCACCATCGTTGATGCTCGAATCAGTGCGCCATGGATGAGTGGTTTCGATGCCTTCAGACAACGCCAGCCAACATGATAGTCACCCTTTACGTCGTCCACGCCTCCACGCGCCGCCGTCGGGGACCAACCCATCCAGTTTAGATCACGTTGGCCAATCCTTCTCTACCACCCTTATCTTCATCTGCGACCTATAATGTCCCCCACGTGCCGCTCCATGTTCTGCCACCTAATTCCGTCAGGTCCAACCACCACTGCTTATGTAGTCAAATCTTCAAATTTGTATGCGCCGCCACCCACTCAACATTCAAGGTTGATGAATCTTTGGCACATTCTGACCAAAATTCTTTTTAGGTATATCTCACCAGCAACTGGAAGAGCTTCGATAGTAGATTGCAGCAATTGAGGCTACCTTAGGGGTGGCATCCGACACTTTTGGTCATGGCCTTCATACACCTTTACCGGTGTATTATGAGAATCCGTTAACCTTGTTCCCCACTTTATCCTCTTCGTATACAAATAATACAGTAACAAACTCTACAAAATATTTTTCAGAGAAAAAATTAAACGACAATAAATATTTCTCATGGTCTTAGTCAGTGAAAATGGTCCTTGAAGGATGACATAAATTTGGTTTTCTGACAAGGTAAGTACCACATCCTCCACTAGGAGATCCATAGGAATAGTATTGGAAGGGAGAGAACTCTCTTCTTCGATCCACATTGATCAAATAGTATAGAGCCATAGATCAGCAAACCCTTACTTTACGCTGCAATTGCTAAGGACATTTGGGGCACAACCTAGAAACTATATTCCAAATGTTAGAATGCCTCTCGCTTATACACACTACGAAAACAAGTTCATGAGTGCACGCAAGGAACTATGGATGTCACATCCTTTTTTAACAAGCTCTCTCTTATTTGGCAGGAAATGGACCTATGCAGAGAACTAATTTGGAGCAATGGTGTGCAGTCCTTTAGAATTGAAGAGATTGACAGGATTTATGCCTTTCTTGTTGGTCTTAAGTTTGATGTAGTTCGTAGGCGTATACTGGACCAGAGACCGATTCCCTCCTTGATGGAGGTTTGTTATGAAATCCGCCTTAAGGGGAATCGTACAAGTGCTATAAATATTTCAGCAACTCCTGTTATTGACTTAGCTGCTTTTAGTGCGAGGTCCTCTACTAGTGGCAGTGACAAGAACAATGGAAATTCAATTTCTGTCTATTAGCAATGCAAGAAACAATAGCCTACCCAGGTGCAATGTTGGGAGTTACATGGTCGTCCCCCAAGAGGTTAGAAATGCTCTCCTAGTGACAAACAAAGCATTGGGCATGCGTATGTGAGTGAGCCTGCTAGACCTTCTCAACCACCTGATCCACACATGGAAACCAAACCAATCTTAGTCCCACTACTCTAGGCACCATTGTCCAATCAGGTATACCTCAGTCCTTTGGTCTTATTAGTGTTGATGAGAAAAACCTTTGAATTCTGGATTCCGGTGTCGTAGATCATTTTAACTAATTCTTCTGAACATTTTGTGTCCTATATTCCATGTGTTGGTAACAAAACAATCAGAATTGCAAATGGCTCCTTAGCTTCCATTGCTGAAAAGGGAAAGATTTCTCTCTATGCAGGGCTCTCCCTACATAATGTTTTGCATGTGCCCAAAATTTCTTATAATTTGCTACCTGTAAGCAAAATTACTCATGAGTTAAACTGAGGAGCATTCTTACCTGATCCTATTTCTTTTCAAAACTTGAGCTCGAAGAGGATGATTGAGACTGCCGAGCATAGTAGGGGACTCTACCTTCTTGATGATGGCGCCTCTTCTAGTAGCACTTCTAGGACTAGTCTTTTGTCTTCCTATTTTACTACTTTTGAACAAGAGTGTATGTTATGGCATTTTCATTTAGGCCACCCTAATTTTCAATATATGAAACATTTATTTTCTCATCTTTTCTTTAAACTTGATGTGTCTACCTTATCTTGTGATGTATGTATTCGGACTAAACAATGTTGGGTTTCTTTTCCTTCACAACCATACAAACCAACCTACCATTTCACACTTGTTCATAGTGATGTCTGGGGACCATCCAAGATAACTATCTTATCTGGGAAATGGTGGTTTGTAACCTTTATTGATGATCATACCTGTCTTACCTGGGTCTTTTTCGTCTTCGACAAATCATAGGTTACCTCCGTCTTCAAGGACTTCATCACACCATAGAAACGCAGTTCAATGCAGTGATTGCTATTCTACAAAGTAACAATGGTCGTGAGTTCCAAAACCACACCCTCAATGAGTTTTTGTTCTCCAGAGGGATTGCCCACCAAAGTTCCTATGCCTACACGTCCGAACAAAATGGGGTAGTCGAGCACAAAAGCTGTCACCTTTTGGAGTAGCTCATTCTCTTATGTTGTCTATTTCCCTTCCTATATCTGGGGCGATGTCGTTCTCACTACCACCCATCTTATCAATCGGATGCCTTTTCATGTCCTACTTTTTCAGACCCCCTTGCCATGTCTTAAAGAGTCATATCCCTCTACCCACCTCATTTCTGATGTTCCTCTTTAGGTTTTTGGGTGCACAATCTATGTTCATAACCATGGTCCTAACCCAAATAAGTTTACCCCTCGGACCTCGGGCTCATGCATGTGTTTTTGTTGGTTACTCTCTGCACCAATGAGGCTGTAAATGCTTTCATCTATCTTCTTGTAAGTACTTTGTCTCCATGGATGTCACCTTTCTTAAGGATCGTCCTTTCTTTTCCGTTAGCCTACTTCAGAGTGAGAGTGAGAATGAGGAGTCTAATTGGGTAATTTCCTTAGAGTGAGAATGAAGATGGGGGATGAGTTTGAAATTAAAGACTTTGGGAATATGAAATACTTTCTTAGAATGGAAATTGTCAGATCTAGAGAGGGCATCTCTATATCCTAGAGGAAATACACCATTGATTGGTCAACTGAGACAAGTATGTTAGGATGTTGTCCCGCCAATACACCTATTGAATTCAATGCCAAACTCAGGGATACAGGTGACAAAGTTTTGATTGGCAAAGAGAAACTTAGCGCCTAGTGGGAAAACTTGTTTATTTATCTCACACTAGGCTTGACATCTCACATACTGTGAGTACTGTTAGTCAGTTCATGTAGACTACTTGAATAACACGGAGCCAGTAAACAGAACTTTGAAGTATTTAAAAGTAACTTTTGGTAAAGGGTTGAGATTCAGGAAAACTGACACAAGGTGTATTAAGGCCTATACAGATTATGATTAGGCAGAGTCTATTGTTGATAGAAAATCTACCTCTGGGTACTGTATTTTTGTGTGGGACAATCTCGTTACTTGGAGAAGTAAGAAGGAAGGGGTTGTTGCTAGGATCAGTGCTAAAGTTGAGTAAAGGGCCATGAGTTTGGGAATTTGTAAGGACATTTGGCTCTAGAAGGTGTTATATGATCTTCATCAGAACAATGAGATGCCTATGAAACTTTTCTGCGATAATAAGGCAGCTATTGGAATTACAAATAGCCTGATCTAACATGACATAACTAAACATGTGGAGATTGATAAACACTTTATCAAAGAGAAATTGGATAGTGGTAGCATTTACATTCCTTACACACCTTCAAGCCAACTAATTGATGATATTCTCACAAAAGAGTTTCTCAGACAGAGCTTTGAGTCTTGTGTTGAGTGGGGTCTTTTTGGCATTGATAACCCAACTTGGGGCTTTGTTGTAGGTTGAAAGCTCAAAGATTTTCTTAGTCTTTTATGTTTCCCTATTTATCTTTCATACTTTTAATTAAGCTTCTATTGCCTATAAATTAATGCTCCCCTATACCATTAGTTTTATAAGAAAATAATAAGAAAGATTTGCACTTGTGGTTTTTTCTCTTTGAACTGGGTTTTCATGTAAAACTTGTATTTGTTGTTCGTCTCTACTTTCAATCAATAGTTTTTCAAAGCTTTGGGCAATCATGTGTATTAAAGTAGTATAGGATAGCCATGGTCCTTGTGCAATCAATTTCTGAGTTATCATTTTGTTTCATTTTGATCTGTTTATTCATACCAGCCTGATAGTCAGAGAAAGTTTCTGTTAGGATCAGCCATTTAAAAAAAGGGTTCGTGAGAAATGATGCAGTTTGCATAATGTGACTTCTTGTTATTCATTGTGGTTTAGGATTTTCCCAGTTGTTTTTCCATGAATTTCCTTCATATTTAACTTTGAGTTTCTAATTTTTCAATGATGCTAATTTATCCATTTTGCACAACGCTCTTTCGTCCAGCAAGAAATAGTCAGTTAAGGGGTAACTTAGACAGGAAGGAAATGAAGAATGGGATGTCAGAATTGTTTATATGGAAAAAAGATACCAAAGGTGAAAGGGGTGATTTTTGAAGAACATGCCAAAATATTTTCTCATGGTGAATTTGATTGAAATTTGGTTAGATTCTCATTTCTTTAGGCTTCTGTAATAATATCAACAAGCTTGTATTGGGAGGTTATATTTAAATGGAAAATTTTCAAGTTTAATGCTTTGTTTGAGGCTTATCAAGATTCATTCTTTGCAGAACATTGTTTCTTTTCCAGTTGCATCTGAGATGCTATGTTTGTTCTTTCATGAATGCTTCCAATCCCAAGAACATTTAACAATAGCAATTTGGTTTCAAATCATTGGAAATTAGAAGTTCCTTTGAAGCTGATACCCTTTGGAAAATGAAATCAATGTTTAGAAAGCAG

mRNA sequence

CTTTATATCATCCCAAAAGAAAAAAGAATAATAATAATAATAAAATAATTACAACAGTTGTTTACGGTTTCGTTTCTGCCACAGCTTCTCTCTCAAAGGCAACCAATTAGAAAATCAGAAATTTGAAGTTTTGTAAACAAAAACCACAAATTCTTTGAGCCGCTCATTAGGCCGGAATCAAATATCTTGTTGCTCTGTGTGCCGCTCCTCTTCCACTGTCCACCACGCACCCACAAAATGGGAACTTCTCTTCTCTCAGTTCCTGCCCCATTCTTCCACTCCTCCCATCGTTCCCGATTCACCACTTCATTCCCATTTTCATCATCTAGACCCAGCCCCTTCCTCTCTTCTTCCTCCTCCTCCTCTTCTTCATCTTCGGTTGTTGATGAAGAACTCAATTCTTCTTCCCCAGATCAACTCTCTCTTCAATCTGAATCTGACCCAGATGATTCTTCCTTCAGAGGATGTAAGGCTTGTGGAAAGGAAGAAATTGAGAGGGGATGCAATGGTGAGGGAAGGATGCAAGGTGGAATTGCAACAGTCCCTGGTTTTGGTTGGTGGCCTATAAAGGCATACAGGCCTTGTCCTGGATTTGTAGCATCAGGTGGCAGATACAAGCGGCGTGGACAAAGCATGGACGAGGTTACATCTGGAGGAGGGAGGACCGATGCCTCTGCTAGTGTTGGTAGAAAGGACTCGTCGAGCAAGAAATAGTCAGTTAAGGGGTAACTTAGACAGGAAGGAAATGAAGAATGGGATGTCAGAATTGTTTATATGGAAAAAAGATACCAAAGGTGAAAGGGGTGATTTTTGAAGAACATGCCAAAATATTTTCTCATGGTGAATTTGATTGAAATTTGGTTAGATTCTCATTTCTTTAGGCTTCTGTAATAATATCAACAAGCTTGTATTGGGAGGTTATATTTAAATGGAAAATTTTCAAGTTTAATGCTTTGTTTGAGGCTTATCAAGATTCATTCTTTGCAGAACATTGTTTCTTTTCCAGTTGCATCTGAGATGCTATGTTTGTTCTTTCATGAATGCTTCCAATCCCAAGAACATTTAACAATAGCAATTTGGTTTCAAATCATTGGAAATTAGAAGTTCCTTTGAAGCTGATACCCTTTGGAAAATGAAATCAATGTTTAGAAAGCAG

Coding sequence (CDS)

ATGGGAACTTCTCTTCTCTCAGTTCCTGCCCCATTCTTCCACTCCTCCCATCGTTCCCGATTCACCACTTCATTCCCATTTTCATCATCTAGACCCAGCCCCTTCCTCTCTTCTTCCTCCTCCTCCTCTTCTTCATCTTCGGTTGTTGATGAAGAACTCAATTCTTCTTCCCCAGATCAACTCTCTCTTCAATCTGAATCTGACCCAGATGATTCTTCCTTCAGAGGATGTAAGGCTTGTGGAAAGGAAGAAATTGAGAGGGGATGCAATGGTGAGGGAAGGATGCAAGGTGGAATTGCAACAGTCCCTGGTTTTGGTTGGTGGCCTATAAAGGCATACAGGCCTTGTCCTGGATTTGTAGCATCAGGTGGCAGATACAAGCGGCGTGGACAAAGCATGGACGAGGTTACATCTGGAGGAGGGAGGACCGATGCCTCTGCTAGTGTTGGTAGAAAGGACTCGTCGAGCAAGAAATAG

Protein sequence

MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLSSSSSSSSSSSVVDEELNSSSPDQLSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFVASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSKK
Homology
[Close]
BLAST of CsGy4G006440 vs. NCBI nr
Match: XP_004148991.1 (PREDICTED: uncharacterized protein LOC101208661 isoform X2 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 2.5e-68
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSKK 159
           ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSKK
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSKK 158

[Close]
BLAST of CsGy4G006440 vs. NCBI nr
Match: XP_011653222.1 (PREDICTED: uncharacterized protein LOC101208661 isoform X1 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSK 158
           ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS K
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSRK 157

[Close]
BLAST of CsGy4G006440 vs. NCBI nr
Match: KGN53420.1 (hypothetical protein Csa_4G052700 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 4.7e-67
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS 156
           ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS 155

[Close]
BLAST of CsGy4G006440 vs. NCBI nr
Match: XP_008451930.1 (PREDICTED: uncharacterized protein LOC103493082 isoform X2 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGT+LLSVPAPFFHSSHRSRFTTS PF SS      XXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTALLSVPAPFFHSSHRSRFTTSLPF-SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGR+QGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSKK 159
           ASGGRYKRRGQSMDEVTSGGGRT+ASASV RKDSSSKK
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTEASASVSRKDSSSKK 157

[Close]
BLAST of CsGy4G006440 vs. NCBI nr
Match: XP_008451929.1 (PREDICTED: uncharacterized protein LOC103493082 isoform X1 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 5.2e-58
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGT+LLSVPAPFFHSSHRSRFTTS PF SS      XXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTALLSVPAPFFHSSHRSRFTTSLPF-SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGR+QGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS 156
           ASGGRYKRRGQSMDEVTSGGGRT+ASASV RKDSS
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTEASASVSRKDSS 154

[Close]
BLAST of CsGy4G006440 vs. TAIR10
Match: AT5G42070.1 (unknown protein)

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-30
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 73  SFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFVASGGRYKRRGQS 132
           +F GC+ACGKEE E GCNG+GR+QGGIATVPGFGWWPIKAYRPCP FV +GGRY+R GQS
Sbjct: 67  TFSGCRACGKEEKESGCNGDGRIQGGIATVPGFGWWPIKAYRPCPAFVEAGGRYRRIGQS 126

Query: 133 MDEVTSGGGRTDASASVGRKDS 155
           MDEV  G G + +S SV   DS
Sbjct: 127 MDEVAFGRGDSKSSTSVDTSDS 148

[Close]
BLAST of CsGy4G006440 vs. TrEMBL
Match: tr|A0A0A0KUY4|A0A0A0KUY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052700 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 3.1e-67
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS 156
           ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS 155

[Close]
BLAST of CsGy4G006440 vs. TrEMBL
Match: tr|A0A1S3BSL8|A0A1S3BSL8_CUCME (uncharacterized protein LOC103493082 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493082 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGT+LLSVPAPFFHSSHRSRFTTS PF SS      XXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTALLSVPAPFFHSSHRSRFTTSLPF-SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGR+QGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSKK 159
           ASGGRYKRRGQSMDEVTSGGGRT+ASASV RKDSSSKK
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTEASASVSRKDSSSKK 157

[Close]
BLAST of CsGy4G006440 vs. TrEMBL
Match: tr|A0A1S3BSP7|A0A1S3BSP7_CUCME (uncharacterized protein LOC103493082 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493082 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.5e-58
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQ 60
           MGT+LLSVPAPFFHSSHRSRFTTS PF SS      XXXXXXXXXXXXXXXXXXXXXXDQ
Sbjct: 1   MGTALLSVPAPFFHSSHRSRFTTSLPF-SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ 60

Query: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFV 120
           LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGR+QGGIATVPGFGWWPIKAYRPCPGFV
Sbjct: 61  LSLQSESDPDDSSFRGCKACGKEEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFV 120

Query: 121 ASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSS 156
           ASGGRYKRRGQSMDEVTSGGGRT+ASASV RKDSS
Sbjct: 121 ASGGRYKRRGQSMDEVTSGGGRTEASASVSRKDSS 154

[Close]
BLAST of CsGy4G006440 vs. TrEMBL
Match: tr|A0A0D2TCF4|A0A0D2TCF4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G256100 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.5e-32
Identity = 85/163 (52.15%), Postives = 100/163 (61.35%), Query Frame = 0 

Query: 1   MGTSLLSVPAPFFH--SSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXX 60
           M  +LLS P P  H  S  +  +TTSF   +    P+                       
Sbjct: 1   MAMALLSAPPPPSHKTSFFQPPYTTSFRSIAFIKYPY---KLTAASSTTPTAEDKPTASP 60

Query: 61  DQLSLQSESDP----DDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYR 120
           D ++++SES      +D  FRGCKACGKEE+ERGCNGEGR+QGGIATVPGFGWWPIKAYR
Sbjct: 61  DGVAVESESATMVAVEDPPFRGCKACGKEELERGCNGEGRIQGGIATVPGFGWWPIKAYR 120

Query: 121 PCPGFVASGGRYKRRGQSMDEVTSGGGRTDASASVGRKDSSSK 158
           PCP FVASGGRY RRGQSMDEV SGGG   +S  +  +  SSK
Sbjct: 121 PCPAFVASGGRYTRRGQSMDEVASGGGGRVSSIGISDEAESSK 160

[Close]
BLAST of CsGy4G006440 vs. TrEMBL
Match: tr|A0A2I0LB46|A0A2I0LB46_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_001684 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 78/144 (54.17%), Postives = 91/144 (63.19%), Query Frame = 0 

Query: 3   TSLLSVPAPFFHSSHRSRFTTSFPFSSSRPSPFLXXXXXXXXXXXXXXXXXXXXXXDQLS 62
           +SL +  +P +HS  + +   S P   + PS  +                      D L 
Sbjct: 4   SSLFAALSPSYHSLSQPQLHLS-PSPFNGPSNLIRFPSSKLSAPLCSSSTSTPVVEDGLP 63

Query: 63  LQSESDP-----DDSSFRGCKACGKEEIERGCNGEGRMQGGIATVPGFGWWPIKAYRPCP 122
             ++SDP     DD  FRGCKACG+EEIERGCNGEGR+QGGIATVPGFGWWPIKAYRPCP
Sbjct: 64  PPAQSDPPIETSDDVPFRGCKACGREEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCP 123

Query: 123 GFVASGGRYKRRGQSMDEVTSGGG 142
           GF+ASGGRY RRGQSMDEV SG G
Sbjct: 124 GFIASGGRYFRRGQSMDEVASGRG 146

The following BLAST results are available for this feature:
BLAST of CsGy4G006440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148991.12.5e-68100.00PREDICTED: uncharacterized protein LOC101208661 isoform X2 [Cucumis sativus][more]
XP_011653222.12.8e-6799.36PREDICTED: uncharacterized protein LOC101208661 isoform X1 [Cucumis sativus][more]
KGN53420.14.7e-67100.00hypothetical protein Csa_4G052700 [Cucumis sativus][more]
XP_008451930.12.1e-5992.41PREDICTED: uncharacterized protein LOC103493082 isoform X2 [Cucumis melo][more]
XP_008451929.15.2e-5892.26PREDICTED: uncharacterized protein LOC103493082 isoform X1 [Cucumis melo][more]
BLAST of CsGy4G006440 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42070.13.3e-3071.95unknown protein[more]
BLAST of CsGy4G006440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G006440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUY4|A0A0A0KUY4_CUCSA3.1e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052700 PE=4 SV=1[more]
tr|A0A1S3BSL8|A0A1S3BSL8_CUCME1.4e-5992.41uncharacterized protein LOC103493082 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BSP7|A0A1S3BSP7_CUCME3.5e-5892.26uncharacterized protein LOC103493082 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0D2TCF4|A0A0D2TCF4_GOSRA9.5e-3252.15Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G256100 PE=4 ... [more]
tr|A0A2I0LB46|A0A2I0LB46_PUNGR1.2e-3154.17Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_001684 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G006440.1CsGy4G006440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..158

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G006440Cla012815Watermelon (97103) v1cgybwmB283
CsGy4G006440Csa4G052700Cucumber (Chinese Long) v2cgybcuB165
CsGy4G006440MELO3C016276Melon (DHL92) v3.5.1cgybmeB269
CsGy4G006440ClCG07G011490Watermelon (Charleston Gray)cgybwcgB302
CsGy4G006440CSPI04G06510Wild cucumber (PI 183967)cgybcpiB168
CsGy4G006440CmaCh04G006770Cucurbita maxima (Rimu)cgybcmaB547
CsGy4G006440Lsi07G007300Bottle gourd (USVL1VR-Ls)cgyblsiB278
CsGy4G006440Cp4.1LG01g00520Cucurbita pepo (Zucchini)cgybcpeB508
CsGy4G006440MELO3C016276.2Melon (DHL92) v3.6.1cgybmedB270
CsGy4G006440CsaV3_4G006730Cucumber (Chinese Long) v3cgybcucB171
CsGy4G006440Cla97C07G138250Watermelon (97103) v2cgybwmbB304
CsGy4G006440Carg13081Silver-seed gourdcarcgybB0044
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G006440Cucumber (Gy14) v2cgybcgybB084
CsGy4G006440Cucumber (Gy14) v2cgybcgybB127
CsGy4G006440Cucurbita maxima (Rimu)cgybcmaB498
CsGy4G006440Cucurbita moschata (Rifu)cgybcmoB460
CsGy4G006440Cucurbita moschata (Rifu)cgybcmoB467
CsGy4G006440Cucurbita moschata (Rifu)cgybcmoB521
CsGy4G006440Cucurbita pepo (Zucchini)cgybcpeB487
CsGy4G006440Cucumber (Chinese Long) v2cgybcuB163
CsGy4G006440Cucumber (Chinese Long) v2cgybcuB182
CsGy4G006440Bottle gourd (USVL1VR-Ls)cgyblsiB231
CsGy4G006440Bottle gourd (USVL1VR-Ls)cgyblsiB274
CsGy4G006440Melon (DHL92) v3.5.1cgybmeB228
CsGy4G006440Melon (DHL92) v3.6.1cgybmedB229
CsGy4G006440Melon (DHL92) v3.6.1cgybmedB250
CsGy4G006440Watermelon (Charleston Gray)cgybwcgB267
CsGy4G006440Watermelon (97103) v1cgybwmB304
CsGy4G006440Watermelon (97103) v1cgybwmB300
CsGy4G006440Wild cucumber (PI 183967)cgybcpiB166
CsGy4G006440Wild cucumber (PI 183967)cgybcpiB185
CsGy4G006440Silver-seed gourdcarcgybB0652
CsGy4G006440Cucumber (Chinese Long) v3cgybcucB170
CsGy4G006440Cucumber (Chinese Long) v3cgybcucB185
CsGy4G006440Watermelon (97103) v2cgybwmbB256
CsGy4G006440Watermelon (97103) v2cgybwmbB294
CsGy4G006440Wax gourdcgybwgoB352