CsGy4G006340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G006340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ribosome maturation factor
Location	Chr4 : 4584706 .. 4588980 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAAACGCCCCCCAATCCTATAACCTGTCACAATGTAAGTGGTTGAATTGAAAATGGCGAGCTGTCATCTTTACCCCCACAACAAATTCAGGCTGCCCATCGATAAGCTAATATCTTTCGGTTTTTCCAGCTATCACGGACTCCAAATCCCTATCGAACATCCTTTAATATTATTTCTACACCAAGTTTCCTCTCAAACGACGTCGTTATCTTCTTCTATATATTACCCCTCCCTTGCCCTATTTTTCCACCCAAGTCTACTCTTCCTTCGGCGGCAAGGAATTTGACTCTCCCGCGTACCTCTTACAACTTTTAATCTTTCCTTTGGGATCTCCCAAATTTCTTTGCCCTAATTCTTCCCGGTATTTCTCCGATCAGTTTTCCACCCGGCGAATTATCTCCTCTTCAAGAGGTGTGTTCTTTCTTCTCCGTTTCGGTCCTACGATGTTTACTTTACGATGGAAACCCTAGGTGTTTTTTTGTCTCCGATTTCGTGGTTCTTTTGAATTGATATTGTTTGTTGGTTGTTGGTGGTGGAGTAGATGTTTCCCCCCCTGAATTATGGTTTTTTATTTGTTATATAATGAGGTTGAGTGCGAGCGGAAGATTTCTTGGTTCTGTTAGGGTTTTATTGTTCGGATGCCTTTAATTTTTCCGTAATTTGGTGCGAACTATATCGTAGTTTCCTTTCTATCGGTCTTTCTTTGATTCATGATGAGGCAACGGCAGTATGTTGTATCTACTGACAACTTTTATTCCTCCTACTTATACAAGGGCATGTATGGTTTCTTTTCAGTTTTCTGTGGCTATCTGCCTAATGTATGCAGTAGAGTTCTATTTCTTGATTCTTTGAACGAAACCTGGCGAGGAATTGTTTGATTTTGTGCACTTTAAATCATTTCTCAGCCATTTTGCCTTGTCTATTGTTTGCTTGTCTACTTGCGAATTTCTTTAAAATCTTACTTTACAAGTTAAACAACAACTCTATTTTTCTAATCTTGTGTTAGATGGCCGCTAAACCACTTACAACTGAGGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGGTTGGGCTTCTGAATTTCTTGCATCAGTACCTCTGTGTTCTTGTGCCTCTTGTGAATTAACTGATTATTCCGTTTCTACGTTTTTTTTTAATTAGACGACATCATTAAAATGTCCAAGAATACGGGAAATAAAGGCAGGAAACAGAGAAGGTTACCGGTAAGAATCTGTTTTTTTTTAATGCTTCTAACCTGAGTAATTTACATGTGAAATTGAAGTTTTCTTTTTATTCTAATAATTTAGTCATTTATCTTTTCATATGCAGAACAAAATGCAGAAGTTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGATTCATGGACTCTAGATCTTCTCTGAGACAGGTTTGTGCAATTATTTAACGTAATTATCTTTCATTTTGCTTGTTTTGTGTGATTAGTTCTGATTATTCAATTTTTTAGGGGGCTTTGGCCAACAGAAGGTCAAACTTTCAAGGGAATCAGTTTCCTTTGGCAACGGAGGTTGCAAGAAAGGCTGCAGTTGCTCCTATTCGTCCTAGAGCTTTTACTCGTAGGGCACCCAATTGGAATAAAACAAGGTATTGACTGTATTTTTTAACCAACAGGAAGCTCTTATTTTGAATTATGATATGTTGTAGTTGAGCAACCGACTAAAACTGTATGATATATAAAAGAAGACATTATGTGAGAGAAACAATTGAAATCGTTTCTAGTTGGTTTAATTTGCTATTTGATGCTGTGACAGGTAAACCACGTATATACACAATTGATGACTTCTACAATGTCCATCAAGTTTTACTATATGAAGTTAGCAACATAATATGTTGATTGGAAAAACTGGATGATACGTTTTTGCTTCAACCAGTAATATTGGAGTGGGACTATTTCCAATAATTTCATATCTTCCGTGCTGCTTGGGATTTGTTTCTGCTTTATCTTCTTAAGTTGGTTTTGGAATTCATCAAGTTATCTTTTGGTTTTTTTGATGAGTAAAGGGATTGGTGGGAGTCTGCTGAAGGTGGGATGGAGATAATTTGGAAATTGTGAATGAATTTGATTGCTTCAGTCATCTGGAAAAATGTGGTCGTAAAAAGGCTTTTGTGTGCATTAGATATTTGTGTACGTTTGAGTTTTTGCTCCCTGTTAAATGTGTTAACTGTTTTGGATTTCTGAAGAATTCATAGACAACCATATCATTAGAGCAGCTTCGACCAGATATCCTTTTGTTGCAAGGAAGTGGAAGCTGCGTTTGAAGATGTGATGTTAGTTACGCCAGATGGTTTAAGATTGTGGTGTCTCCCTTTTTTGAGTAATACACAGTATTCTTGTTTGTCATGCTCAAACTCAGCTGTTGTTAACTTCCATTCCTTATAGATGACAATTGACATTGTCTTCATTGGCTTGGATTTGAGCCTGGGGTGATGTGAGGTTTTGGTCATTTTTGCACCTATTTTAGTGCTAGTTTCCTTTATTCCACTTGGTGTTGTTCCCTTTTCATTCGCAGTTATCCTGGGGACATTACTAATCCTTCCAACTACCATGTTGTGATCAGTCTACAAGCACTTGTGGACTAGCCATAGGTCTTCAAGTGAGGAAACCATTGACTACTGAAAGTTTTCCAATTGTGAAATATTGTTCTTTAAACTCCTGTAGTCAGCCTGGCTCGTGGAAGATGATTCTTCATTTTCTATTGTAAATTTTTGGGGTGGAATATAGATCTTAATTGTTGCAAGTAATCGAGGAACTTGGTTTTTGGTAATTTGTCGTTGCATAATCGTATGATAACAAAAGTGCTGATGAAACTATGAATGGTTAGTTAAAGCACGTCGAACATTGACTTTATGGCTGCTTCTGTGAGGCATCATCTGTGTAGAATCTTGGGTCTAGTCACCGTGGAATACACTAGTACTGCAGAAGTTTTTCTGGTTGAAGCCTTCTTTTTCTGGTTCAAGTTCATTGATTTGAGGTTTTCTGTTCATTGTGGTCGATTCTTCCTGGAGTAGATTTTCGTTATTTGATAAATACTAGATTGGAGCTTTTCATTGTCCATTAAAAGCAAGCAAAGCATGTGGGGTGATTGATTTGAGGTTTGGATCATACTATATTACTGGAAAGTGCTTTTCTGGATCCTATCAAGCGTAACACATTTTGAGCTGATTCACATTTTTTGATGACTGCATTCACCTGATCTGGTTTGTGTTTTATTTCTGTTAATGGGTAACCGTTTGAATTTGATCAATTATGGAGGTAAGATTCTCTGATCTATCTACAGTTAGCCACTCGAGAACATGTTGAAGAAAATCACTAGTGTCTGAAATTCTAATTTGGATACTACACTACATGTTTTACCTAGTTTCTTTCTTTTGTTCATCAATGATTTCAACAATTTTTGGTACAGGGTTGAGGCTCATCCACCGGTTCCGAGGAAGCCTTTCACCAATGGAAACTTTGTTCCCAAGGTATTTCGTTTGTTTCTTACTAAGGTGTTCAGAGACTCAGAAGTGTAGAGGTTCTTTAATGGATAGTTGCAAATGTTTTATCTTGTTCATTTATTCCTTCCACCCACCTTCCTTCTGCAGGTATCTGCACCGGCCCAGCCACAAACAAATACCACGCCAAGACAGAGGCCACAGACTCTGGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTAAGAGTGTTGTCCCAGCGACAAAATGGGGGTGGGGCACAACAACGGAATGGTGGTCGCCAGCAACAAAGACCTCCTTGGGGGAAGAGGCCGTTTTGGTAACTGATGATTACACAACTCAAACCTGGTGGTGCTATGAATAAGCATATTCGTGTGGGGAATGTAGATGATGCTTGCTTGTCCATGGCACCCGATAGCTGATAGGGGATCAAAAGGATGTGATTGTTTCTCGTCTTTGTTTTTTTTTTCCTTAAAAAATTCGAACTTTGCTGGCTTGCTATTTTTAGCGTTTTCTAGCTTCGCTTTGAACCGATTATTATAGAAATTTGTTGCAATGTATGTAAAGTGTTTTTTCTTTTGTTCTTGTGGCCTATTTCCTCTGGCTTGTTCTGTTTAAATCAATCTCATTAGACCTCCGCTCCCTTCATCTTATTTCTAACACTACCCTGTATTGTTGCGAAGATTGTTATTAATTAAATTAGTCAGCTGCTGAAGGCCAAACAGATTTAATGTCAACTTAACTAGATTTAATTA

mRNA sequence

ATGACTAAAACGCCCCCCAATCCTATAACCTGTCACAATATGGCCGCTAAACCACTTACAACTGAGGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATCATTAAAATGTCCAAGAATACGGGAAATAAAGGCAGGAAACAGAGAAGGTTACCGAACAAAATGCAGAAGTTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGATTCATGGACTCTAGATCTTCTCTGAGACAGGGGGCTTTGGCCAACAGAAGGTCAAACTTTCAAGGGAATCAGTTTCCTTTGGCAACGGAGGTTGCAAGAAAGGCTGCAGTTGCTCCTATTCGTCCTAGAGCTTTTACTCGTAGGGCACCCAATTGGAATAAAACAAGGGTTGAGGCTCATCCACCGGTTCCGAGGAAGCCTTTCACCAATGGAAACTTTGTTCCCAAGGTATCTGCACCGGCCCAGCCACAAACAAATACCACGCCAAGACAGAGGCCACAGACTCTGGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTAAGAGTGTTGTCCCAGCGACAAAATGGGGGTGGGGCACAACAACGGAATGGTGGTCGCCAGCAACAAAGACCTCCTTGGGGGAAGAGGCCGTTTTGGTAACTGATGATTACACAACTCAAACCTGGTGGTGCTATGAATAAGCATATTCGTGTGGGGAATGTAGATGATGCTTGCTTGTCCATGGCACCCGATAGCTGATAGGGGATCAAAAGGATGTGATTGTTTCTCGTCTTTGTTTTTTTTTTCCTTAAAAAATTCGAACTTTGCTGGCTTGCTATTTTTAGCGTTTTCTAGCTTCGCTTTGAACCGATTATTATAGAAATTTGTTGCAATGTATGTAAAGTGTTTTTTCTTTTGTTCTTGTGGCCTATTTCCTCTGGCTTGTTCTGTTTAAATCAATCTCATTAGACCTCCGCTCCCTTCATCTTATTTCTAACACTACCCTGTATTGTTGCGAAGATTGTTATTAATTAAATTAGTCAGCTGCTGAAGGCCAAACAGATTTAATGTCAACTTAACTAGATTTAATTA

Coding sequence (CDS)

ATGACTAAAACGCCCCCCAATCCTATAACCTGTCACAATATGGCCGCTAAACCACTTACAACTGAGGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATCATTAAAATGTCCAAGAATACGGGAAATAAAGGCAGGAAACAGAGAAGGTTACCGAACAAAATGCAGAAGTTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGATTCATGGACTCTAGATCTTCTCTGAGACAGGGGGCTTTGGCCAACAGAAGGTCAAACTTTCAAGGGAATCAGTTTCCTTTGGCAACGGAGGTTGCAAGAAAGGCTGCAGTTGCTCCTATTCGTCCTAGAGCTTTTACTCGTAGGGCACCCAATTGGAATAAAACAAGGGTTGAGGCTCATCCACCGGTTCCGAGGAAGCCTTTCACCAATGGAAACTTTGTTCCCAAGGTATCTGCACCGGCCCAGCCACAAACAAATACCACGCCAAGACAGAGGCCACAGACTCTGGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTAAGAGTGTTGTCCCAGCGACAAAATGGGGGTGGGGCACAACAACGGAATGGTGGTCGCCAGCAACAAAGACCTCCTTGGGGGAAGAGGCCGTTTTGGTAA

Protein sequence

MTKTPPNPITCHNMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRKLQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRVEAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRQNGGGAQQRNGGRQQQRPPWGKRPFW

Homology

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BLAST of CsGy4G006340 vs. NCBI nr
Match: XP_004148996.1 (PREDICTED: uncharacterized protein LOC101210049 [Cucumis sativus] >KGN53410.1 hypothetical protein Csa_4G052600 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 134 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRXXX 193
           EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRXXX
Sbjct: 121 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRXXX 180

Query: 194 XXXXXXXXXXXXXXXXWGKRPFW 217
           XXXXXXXXXXXXXXXXWGKRPFW
Sbjct: 181 XXXXXXXXXXXXXXXXWGKRPFW 203

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BLAST of CsGy4G006340 vs. NCBI nr
Match: XP_008451954.1 (PREDICTED: uncharacterized protein LOC103493102 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 3.7e-86
Identity = 195/205 (95.12%), Postives = 197/205 (96.10%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMDSRSSLRQGALANRRSNFQGNQF LATEVARKAAVAPIRPRAFTRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 134 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQ--RX 193
           +A PPVP+K FTNGNFVPKVSAPAQ QTN TPRQRPQTLDSLFANMKEQRLRVLSQ   X
Sbjct: 121 DAPPPVPKKSFTNGNFVPKVSAPAQQQTNATPRQRPQTLDSLFANMKEQRLRVLSQXXXX 180

Query: 194 XXXXXXXXXXXXXXXXXXWGKRPFW 217
           XXXXXXXXXXXXXXXXXXWGKRPFW
Sbjct: 181 XXXXXXXXXXXXXXXXXXWGKRPFW 205

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BLAST of CsGy4G006340 vs. NCBI nr
Match: XP_022941743.1 (uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941744.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941747.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata])

HSP 1 Score: 300.1 bits (767), Expect = 6.2e-78
Identity = 158/177 (89.27%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMD+R+SLRQGALA RRSNFQGNQF LATEVAR AAVAPIRPRAF RR PNW KTRV
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120

Query: 134 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQR 191
           EA PPV RKPF NG F+PK++AP Q QTN TPRQRPQTLDSLFANMKEQRLRVLSQR
Sbjct: 121 EA-PPVQRKPFNNGTFIPKITAPVQTQTNATPRQRPQTLDSLFANMKEQRLRVLSQR 176

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BLAST of CsGy4G006340 vs. NCBI nr
Match: XP_022136543.1 (uncharacterized protein LOC111008218 [Momordica charantia])

HSP 1 Score: 296.6 bits (758), Expect = 6.9e-77
Identity = 170/204 (83.33%), Postives = 176/204 (86.27%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNK RKQRRLPNK QKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKTRKQRRLPNKTQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMDSRSSLRQGALA +RSNFQGNQFPLA EVARKAAVAPIRPR F RRAPNW+KTR 
Sbjct: 61  LQRFMDSRSSLRQGALAKKRSNFQGNQFPLAAEVARKAAVAPIRPRGFNRRAPNWSKTRF 120

Query: 134 EAHPPVPRKPFTNGNFVPKV--SAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRX 193
           +A PPV RKPFTNG F+PKV  +A AQPQTNT PRQRPQTLDSLFANMKEQRLRVLSQR 
Sbjct: 121 DA-PPVQRKPFTNGTFIPKVAIAARAQPQTNTMPRQRPQTLDSLFANMKEQRLRVLSQRQ 180

Query: 194 XXXXXXXXXXXXXXXXXXWGKRPF 216
                   XXXXXXX   WG+  F
Sbjct: 181 NGNGAPQRXXXXXXXRPPWGRGRF 203

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BLAST of CsGy4G006340 vs. NCBI nr
Match: XP_022982836.1 (uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima] >XP_022982844.1 uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima] >XP_022982853.1 uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima])

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 155/177 (87.57%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MA KPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRR PNKMQKFPNNATQDRPRK
Sbjct: 1   MATKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMD+R+SLRQGA A RRSNFQGNQF LATEVARKAAVAPIRPRAF R  PNW KTRV
Sbjct: 61  LQRFMDARTSLRQGAFAKRRSNFQGNQFALATEVARKAAVAPIRPRAFNRWVPNWKKTRV 120

Query: 134 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQR 191
           EA PPV RKPF NG F+PK++AP Q QTN TPRQ+PQTLDSLFANMKEQRLRVLSQR
Sbjct: 121 EA-PPVQRKPFNNGTFIPKIAAPVQTQTNATPRQKPQTLDSLFANMKEQRLRVLSQR 176

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BLAST of CsGy4G006340 vs. TAIR10
Match: AT4G10970.6 (unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-18
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 31  MDMALDDIIKMSK-NTG-NKGRKQRRLPNKMQKFPNNATQDRPRKLQRFMDSRSSLRQGA 90
           MDM+LD+IIKM K NT  NKG+KQR L NK +KF + A ++   K QR+MDSRS +RQGA
Sbjct: 1   MDMSLDEIIKMEKSNTNVNKGKKQRVL-NKKEKF-SGAAKNSAVKAQRYMDSRSDVRQGA 60

Query: 91  LANRRSNFQGNQFPLATEVARKAAVAPIRPRAFT-RRAPNWNKT 132
            A +RSNFQGNQFP+ T VARKAA A  R R +   R  N N++
Sbjct: 61  FAKKRSNFQGNQFPVTTTVARKAASATPRGRPYNGGRMTNTNQS 102

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BLAST of CsGy4G006340 vs. TAIR10
Match: AT4G23910.1 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-16
Identity = 66/173 (38.15%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 18  PLTTEAIAITEKKMDMALDDIIKMS--KNTGNKGRKQRRLPNKMQKFPNNATQDRPRKLQ 77
           PL  E IA+TEKK+ MALDDIIK++  K   NKG+           F N A ++    ++
Sbjct: 6   PLIAETIALTEKKVAMALDDIIKLAKRKTNVNKGKXXXXXXXXXXXF-NGAARNNTSNVR 65

Query: 78  RFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRVEA 137
             M+S S++RQGA+  RRS FQG QFP+ T +ARKA+ A   P  F  RA N  +     
Sbjct: 66  HHMNSLSAVRQGAVGKRRSRFQGIQFPVTTNIARKASTA--APLDFRGRAFNGGRMTSAN 125

Query: 138 HPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQ--RPQTLDSLFANMKEQRLRV 187
              +   P  N +   +V+A           +  + +TLDS FA+MKEQR+ +
Sbjct: 126 QSRLIAPPVQNISVQARVNAKRHEVDQKVEHRGGKRKTLDSRFASMKEQRMTI 175

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BLAST of CsGy4G006340 vs. TrEMBL
Match: tr|A0A0A0KUX2|A0A0A0KUX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052600 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 9.2e-94
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 134 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRXXX 193
           EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRXXX
Sbjct: 121 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQRXXX 180

Query: 194 XXXXXXXXXXXXXXXXWGKRPFW 217
           XXXXXXXXXXXXXXXXWGKRPFW
Sbjct: 181 XXXXXXXXXXXXXXXXWGKRPFW 203

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BLAST of CsGy4G006340 vs. TrEMBL
Match: tr|A0A1S3BTH9|A0A1S3BTH9_CUCME (uncharacterized protein LOC103493102 OS=Cucumis melo OX=3656 GN=LOC103493102 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.4e-86
Identity = 195/205 (95.12%), Postives = 197/205 (96.10%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 133
           LQRFMDSRSSLRQGALANRRSNFQGNQF LATEVARKAAVAPIRPRAFTRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 134 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLSQ--RX 193
           +A PPVP+K FTNGNFVPKVSAPAQ QTN TPRQRPQTLDSLFANMKEQRLRVLSQ   X
Sbjct: 121 DAPPPVPKKSFTNGNFVPKVSAPAQQQTNATPRQRPQTLDSLFANMKEQRLRVLSQXXXX 180

Query: 194 XXXXXXXXXXXXXXXXXXWGKRPFW 217
           XXXXXXXXXXXXXXXXXXWGKRPFW
Sbjct: 181 XXXXXXXXXXXXXXXXXXWGKRPFW 205

[Close]

BLAST of CsGy4G006340 vs. TrEMBL
Match: tr|A0A2P4JDU2|A0A2P4JDU2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31947 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 119/177 (67.23%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 12  HNMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRP 71
           + MA KPLTTEAIA+TEKKMDMAL+DIIKMSKN  ++GRKQRR+PNK+QKFPNN  QD+ 
Sbjct: 8   YQMATKPLTTEAIALTEKKMDMALEDIIKMSKNPKSRGRKQRRVPNKIQKFPNNIAQDKS 67

Query: 72  RKLQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAF-TRRAPNWNK 131
             ++R+MD+RSSLRQGALA RRSNFQGNQFPLA E ARKAA AP+R RAF   RA NWNK
Sbjct: 68  TTVRRYMDARSSLRQGALAQRRSNFQGNQFPLANEAARKAAAAPLRNRAFGHNRAANWNK 127

Query: 132 TRVEAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVL 188
           TR     P+ ++   NG FV K S P Q Q     +QR QTLDSLFANMKEQR+R L
Sbjct: 128 TR----GPLIQRRAANGGFVAK-SMPPQQQAQPVTKQRSQTLDSLFANMKEQRMRNL 179

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BLAST of CsGy4G006340 vs. TrEMBL
Match: tr|I1LG92|I1LG92_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.3e-49
Identity = 119/182 (65.38%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  KQRR+PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKSQKFSNNFTQDKSAK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTR-RAPNWNKTR 133
           +QR+M+SRSSLRQGALA RRSNFQGNQFP A EVARKA  AP+  R   R R  NWNKTR
Sbjct: 61  VQRYMESRSSLRQGALAKRRSNFQGNQFPAAVEVARKAVTAPLHNRVPNRNRVANWNKTR 120

Query: 134 VEAHPPVPRKPFTNGNFVPKVSAPA----QPQTNTTPRQRPQTLDSLFANMKEQRLRVLS 191
            +   PV ++   NG F  K   P+    Q   +  P+Q+PQTLDSLFANMKEQR+RVLS
Sbjct: 121 FQV--PVGQRRAANGGFAAKQPLPSPQKQQENVDIMPKQKPQTLDSLFANMKEQRMRVLS 178

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BLAST of CsGy4G006340 vs. TrEMBL
Match: tr|I1LG91|I1LG91_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 120/183 (65.57%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 14  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 73
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  KQRR+PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKSQKFSNNFTQDKSAK 60

Query: 74  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTR-RAPNWNKTR 133
           +QR+M+SRSSLRQGALA RRSNFQGNQFP A EVARKA  AP+  R   R R  NWNKTR
Sbjct: 61  VQRYMESRSSLRQGALAKRRSNFQGNQFPAAVEVARKAVTAPLHNRVPNRNRVANWNKTR 120

Query: 134 VEAHPPVPRKPFTNGNFVPK---VSAPAQPQTNT--TPRQRPQTLDSLFANMKEQRLRVL 191
            +   PV ++   NG F  K   + +P + Q N    P+Q+PQTLDSLFANMKEQR+RVL
Sbjct: 121 FQV--PVGQRRAANGGFAAKQQPLPSPQKQQENVDIMPKQKPQTLDSLFANMKEQRMRVL 179

The following BLAST results are available for this feature:

BLAST of CsGy4G006340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148996.1	1.4e-93	100.00	PREDICTED: uncharacterized protein LOC101210049 [Cucumis sativus] >KGN53410.1 hy...	[more]
XP_008451954.1	3.7e-86	95.12	PREDICTED: uncharacterized protein LOC103493102 [Cucumis melo]	[more]
XP_022941743.1	6.2e-78	89.27	uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_0229417...	[more]
XP_022136543.1	6.9e-77	83.33	uncharacterized protein LOC111008218 [Momordica charantia]	[more]
XP_022982836.1	2.0e-76	87.57	uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima] >XP_022982844...	[more]

BLAST of CsGy4G006340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10970.6	8.8e-18	57.69	unknown protein	[more]
AT4G23910.1	1.7e-16	38.15	unknown protein	[more]

BLAST of CsGy4G006340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G006340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUX2\|A0A0A0KUX2_CUCSA	9.2e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052600 PE=4 SV=1	[more]
tr\|A0A1S3BTH9\|A0A1S3BTH9_CUCME	2.4e-86	95.12	uncharacterized protein LOC103493102 OS=Cucumis melo OX=3656 GN=LOC103493102 PE=...	[more]
tr\|A0A2P4JDU2\|A0A2P4JDU2_QUESU	1.6e-50	67.23	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31947 PE=4 SV=1	[more]
tr\|I1LG92\|I1LG92_SOYBN	5.3e-49	65.38	Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1	[more]
tr\|I1LG91\|I1LG91_SOYBN	1.2e-48	65.57	Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G006340.1	CsGy4G006340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..205
None	No IPR available	PANTHER	PTHR36048	FAMILY NOT NAMED	coord: 14..213

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G006340	Cla012807	Watermelon (97103) v1	cgybwmB283
CsGy4G006340	Csa4G052600	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G006340	MELO3C016298	Melon (DHL92) v3.5.1	cgybmeB256
CsGy4G006340	ClCG07G011580	Watermelon (Charleston Gray)	cgybwcgB302
CsGy4G006340	CSPI04G06420	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G006340	CmaCh16G005420	Cucurbita maxima (Rimu)	cgybcmaB498
CsGy4G006340	CmaCh04G006830	Cucurbita maxima (Rimu)	cgybcmaB547
CsGy4G006340	CmoCh04G007290	Cucurbita moschata (Rifu)	cgybcmoB521
CsGy4G006340	CmoCh16G005940	Cucurbita moschata (Rifu)	cgybcmoB467
CsGy4G006340	Cp4.1LG01g00500	Cucurbita pepo (Zucchini)	cgybcpeB508
CsGy4G006340	Cp4.1LG14g02690	Cucurbita pepo (Zucchini)	cgybcpeB487
CsGy4G006340	MELO3C016298.2	Melon (DHL92) v3.6.1	cgybmedB253
CsGy4G006340	CsaV3_4G006640	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G006340	Bhi01G002303	Wax gourd	cgybwgoB352
CsGy4G006340	Carg13074	Silver-seed gourd	carcgybB0044
CsGy4G006340	Carg22252	Silver-seed gourd	carcgybB0589

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G006340	Cucumber (Chinese Long) v3	cgybcucB170
CsGy4G006340	Cucumber (Chinese Long) v3	cgybcucB185
CsGy4G006340	Watermelon (97103) v2	cgybwmbB256
CsGy4G006340	Watermelon (97103) v2	cgybwmbB294
CsGy4G006340	Watermelon (97103) v2	cgybwmbB304
CsGy4G006340	Cucumber (Gy14) v2	cgybcgybB084
CsGy4G006340	Cucumber (Gy14) v2	cgybcgybB127
CsGy4G006340	Cucurbita maxima (Rimu)	cgybcmaB491
CsGy4G006340	Cucurbita moschata (Rifu)	cgybcmoB460
CsGy4G006340	Cucumber (Chinese Long) v2	cgybcuB163
CsGy4G006340	Cucumber (Chinese Long) v2	cgybcuB182
CsGy4G006340	Bottle gourd (USVL1VR-Ls)	cgyblsiB231
CsGy4G006340	Bottle gourd (USVL1VR-Ls)	cgyblsiB274
CsGy4G006340	Bottle gourd (USVL1VR-Ls)	cgyblsiB278
CsGy4G006340	Melon (DHL92) v3.5.1	cgybmeB228
CsGy4G006340	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G006340	Melon (DHL92) v3.6.1	cgybmedB229
CsGy4G006340	Melon (DHL92) v3.6.1	cgybmedB250
CsGy4G006340	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G006340	Watermelon (Charleston Gray)	cgybwcgB267
CsGy4G006340	Watermelon (97103) v1	cgybwmB304
CsGy4G006340	Watermelon (97103) v1	cgybwmB300
CsGy4G006340	Wild cucumber (PI 183967)	cgybcpiB166
CsGy4G006340	Wild cucumber (PI 183967)	cgybcpiB185
CsGy4G006340	Silver-seed gourd	carcgybB0369