Carg13074 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13074
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosome maturation factor
Location	Cucurbita_argyrosperma_scaffold_101 : 148287 .. 151623 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTCCCTTCCAAGTCTCCAATTCCTTCCGCGTTCAGTAATCGACTCTACCGCTAAGCTCAGGGATCTTTCATCTCTTTCCGCGAGGAACTTCGGAATTTTCTCTGCCCTCTGGTGTTTCTACGATCGTTTTCTCGAGCGACGAATTATCTTATCATCAAGAGGTGAGTTCTTTATTATCTGTTTGGTTCTATCGTTACGTCGATGGAAACCCTAGATGCTTGTTTTCGATTTTTTGGTTGTTGGTTGCTGTTCGATGTTTTGGGGGAGACGTAGTGGAGTTTTTATCCTCTTAAGTTGTGTACGAATGTGGTATGAGGAGATTTCTTGGTTTTGTTAATGTTTTATCGTTGAGGATGTGTAGATTACTTGGATTCTTTTTCAGTGGAAACTTAATCAGCGATTATTTTCCTCCATTTGTTTGCTTGTCATGATTTAATTTCTTTTTCTTCCGGGATTCTTCGAGTTTCTTGAGGCCTTGTAAATTTATTGTATTTATTGACAACTTTTAATTCTGAAACTCAGACAGGAACCTGATCGGTTTCTTGAGTTTTCAGAGGTAATTTGTCCAAATTTATTCAGTAGGCATCTATTAATTATTTTTTTATACGTACCGTTGCGAGGCACACTTGTTTTGTGGACTTTAGACCTATAAGCTATTTGAGCCACCTTGTTATTTAATGTTTTTTCTCTTGAGGATGTGTCCTTATTGATCTAATGGCGAATTTATTCCAATTGTTTCTTTCCTTGGTTCACCAGTAACCCTCATTTTTTTAATCTTATATTAGATGGCGGCTAAACCACTTACTACTGAAGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGGTTGGCCTTCAAATTATTGCATCGGTTTCCCCGTTTATTTGAAAATTTATTGATTTTTCTTTTTCTACATCTTGTTGAAATAGACGACATTATCAAGATGTCCAAAAATACTGGAAATAAAGGAAGGAAGCAAAGAAGGTTTCCGGTAAGAACCTGTTTTCTTTTGCATGCGTTTAACCCGAGCAATTTATTGTTGAAATTGGAAGTTTTTTATTATTATCTAATAATGATTCGTCTTTTATATGCAGAACAAAATGCAGAAATTTCCAAATAACGCCACTCAGGATAGACCTAGGAAGTTGCAGCGATTCATGGACGCTAGAACCTCTCTAAGACAGGTTTGTACAGTTTTCAACTTGATTATCATTTATTTTACTTATTTTTTATGACTGGTCCTGAATTTTCATTTTATTTAGGGGGCTTTGGCCAAAAGGAGGTCAAATTTTCAAGGGAATCAGTTTGCATTGGCAACCGAGGTTGCAAGAACGGCTGCAGTTGCTCCTATTCGGCCTAGAGCCTTTAACCGTAGGGTGCCCAATTGGAAGAAGACAAGGTATTGTCTGTGCTTATTGTTAGTCTACGCAAGCTTCTCATTGTGAATTATGATTATAGTTTTTACTTCAATTCTAATTTAGAAACGAACAGTTGATTTTGTGGATGGTTGGTGTGATGAGATATTTCATGATATGGCAGGTAAATTGCGTTTATGAAAAATTGGTGACTTCTACAATGTCCATCAAGTTTTACTATATGAAGTTAGCGCAGTAATTTGTTGGTTGGAACAACTGTGTGATAGTTTTGCTTCAACCAGTTAAAATGGAGTGGGGAGTATTTCCACTTATTTCATTTCTTCCATGCTGCCTGGGAATTGATTCTGCTTTATCTTCTTAAGTTTGGTTTTGGAATTCATCGAATAGTCTTTTGGTTTTCTGATGAGTAAGTGGTTGATGGGATTCTACAGCAAGTGGGACAAAAGTGGGAAAATTTGAATGAAATTGACTGCTGCACCATCTGGAAAAAAGTGTAAAAATAGCTTTTGTGTGCATTGGATGAGTGTAATGTTTTGAGTTTTTGCTCCTTGTTAAATGTGGTGATTGTCTTGGGTTACTCAATTCTTCATAGACGATGCATAACAGTAGAGGAGCCTCAGCCCGTTACCCTTTGGTTGAGGATGTTGAATCTGCTTTGTAACATGTGATGTTTTAACACCCCAGAGCACTCTTCCACAATAGGCTTGTTCACCATGCTCAATGTCTGCTGTGGTCAATTTCCATTCCTGGTAGTTGACAATTGCCATATCTCTTTATGCTTTCATTATTGCCTGCACAGAGCCAAGGGGCTGTGGTTATCTTGAATTTGCGCTTCTTTGTAACCATTCTAGTGAGCTGTCTACTAGTTTCCTTGATTCCTCATGGGGTTCCCTTTTCATTCACCATCACATCCTGGAAACATTAGCCAGCCCTTCAACTACCTTGTTTTGACAAATTTAAGTTCACTTCTTGACCAGCCATAGAACTGCAAATAACTGGAAAATTTTCCACTTCTGAACTAAATGCTTCTATCAACTTCTCTAGTCAGCTTGGACAGGGAAGTTGCTGTTTCATCATCTTTTATTGATCCTTGAGGGTGGAATCGAAATTTTGCTTGCTGCATGTTCGATACTAGTAGTAATTGTGATAAACCGAAGAAATTTGAATGGTTAGTGAAAATATGTCAGTGGCATTTATGGCCTTCTGTGAGGTATTATGTGTAGATTTTGGGGTCTAGTCAGTGGAATACCCTAGTTCTGCAGACGTTGTTCATGCTGTTGATGCTTTTATGTCATATCCCGGTTGAAGCCTCCATTTTCTTGTTCAAGTTCAGATATTCTGTTCATTCGTAATACTATGCAAGCAAAGCATTTGGTGATGGATTTGAGGTTTTGGGTGTGTCTATGTTACCGGAAAGTGCTTTTTTGGATCCAATCAAGCGTACTGTGAGCTGATTCACATTTTTTTGATGAGTGCTTCTCCTGATCTGGTTTGTCTTTTATTTCCATTATTGGGTTCGGTTTGAATTTGCTTATGAGGTAAGGATACTCTTATCTATCTGCCATCATACTCACGCGATGACATGTTGAAGATTATTGGTGTTTGTGAAATTCAAATGTGGATGCTACTTGTTTTGACTAGCAGGTCTGTATATAAATGATATTTTTTCTGTTTCTTCATCCATTTGAATAATTCTTTGTATAGGGTTGAAGCTCCACCTGTTCAGAGAAAGCCATTTAATAATGGAACCTTCATTCCCAAGATAACTGCACCAGTCCAGACGCAACCAAATGCTACACCGAGACAGAGGCCACAAACCCTCGACTCACTGTTTGCCAACATGAAGGAACAGAGATTGAGGGTGTTGTCGCAGCGACAGAACGGCGTTGCACAACAACGGAATGGTTCCCGCCAGCAAAGACCTCCGTGGGGAAGAGGCCGTATTGCTAAC

mRNA sequence

TTATTTCCCTTCCAAGTCTCCAATTCCTTCCGCGTTCAGTAATCGACTCTACCGCTAAGCTCAGGGATCTTTCATCTCTTTCCGCGAGGAACTTCGGAATTTTCTCTGCCCTCTGGTGTTTCTACGATCGTTTTCTCGAGCGACGAATTATCTTATCATCAAGAGATGGCGGCTAAACCACTTACTACTGAAGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATTATCAAGATGTCCAAAAATACTGGAAATAAAGGAAGGAAGCAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAACGCCACTCAGGATAGACCTAGGAAGTTGCAGCGATTCATGGACGCTAGAACCTCTCTAAGACAGGGGGCTTTGGCCAAAAGGAGGTCAAATTTTCAAGGGAATCAGTTTGCATTGGCAACCGAGGTTGCAAGAACGGCTGCAGTTGCTCCTATTCGGCCTAGAGCCTTTAACCGTAGGGTGCCCAATTGGAAGAAGACAAGGGTTGAAGCTCCACCTGTTCAGAGAAAGCCATTTAATAATGGAACCTTCATTCCCAAGATAACTGCACCAGTCCAGACGCAACCAAATGCTACACCGAGACAGAGGCCACAAACCCTCGACTCACTGTTTGCCAACATGAAGGAACAGAGATTGAGGGTGTTGTCGCAGCGACAGAACGGCGTTGCACAACAACGGAATGGTTCCCGCCAGCAAAGACCTCCGTGGGGAAGAGGCCGTATTGCTAAC

Coding sequence (CDS)

ATGGCGGCTAAACCACTTACTACTGAAGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATTATCAAGATGTCCAAAAATACTGGAAATAAAGGAAGGAAGCAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAACGCCACTCAGGATAGACCTAGGAAGTTGCAGCGATTCATGGACGCTAGAACCTCTCTAAGACAGGGGGCTTTGGCCAAAAGGAGGTCAAATTTTCAAGGGAATCAGTTTGCATTGGCAACCGAGGTTGCAAGAACGGCTGCAGTTGCTCCTATTCGGCCTAGAGCCTTTAACCGTAGGGTGCCCAATTGGAAGAAGACAAGGGTTGAAGCTCCACCTGTTCAGAGAAAGCCATTTAATAATGGAACCTTCATTCCCAAGATAACTGCACCAGTCCAGACGCAACCAAATGCTACACCGAGACAGAGGCCACAAACCCTCGACTCACTGTTTGCCAACATGAAGGAACAGAGATTGAGGGTGTTGTCGCAGCGACAGAACGGCGTTGCACAACAACGGAATGGTTCCCGCCAGCAAAGACCTCCGTGGGGAAGAGGCCGTATTGCTAAC

Protein sequence

MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRKLQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRVEAPPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLSQRQNGVAQQRNGSRQQRPPWGRGRIAN

Homology

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BLAST of Carg13074 vs. NCBI nr
Match: XP_022941743.1 (uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941744.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941747.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 2.4e-92
Identity = 193/201 (96.02%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120

Query: 121 EAPPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLSXXXXXX 180
           EAPPVQRKPFNNGTFIPKITAPVQTQ NATPRQRPQTLDSLFANMKEQRLRVLS      
Sbjct: 121 EAPPVQRKPFNNGTFIPKITAPVQTQTNATPRQRPQTLDSLFANMKEQRLRVLSQRQNGG 180

Query: 181 XXXXXXXXXXXPPWGRGRIAN 202
           XXXXXXXXXXXPPWGRGRI N
Sbjct: 181 XXXXXXXXXXXPPWGRGRIGN 201

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BLAST of Carg13074 vs. NCBI nr
Match: XP_023528268.1 (uncharacterized protein LOC111791234 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023528276.1 uncharacterized protein LOC111791234 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.8 bits (878), Expect = 7.8e-91
Identity = 191/201 (95.02%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTG+KGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGSKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120

Query: 121 EAPPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLSXXXXXX 180
           EAPPVQRKP NNGTFIPKITAPVQTQ NATPRQRPQTLDSLFANMKEQRLRVLS      
Sbjct: 121 EAPPVQRKPSNNGTFIPKITAPVQTQTNATPRQRPQTLDSLFANMKEQRLRVLSQRQNGG 180

Query: 181 XXXXXXXXXXXPPWGRGRIAN 202
           XXXXXXXXXXXPPWGRGRI N
Sbjct: 181 XXXXXXXXXXXPPWGRGRIGN 201

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BLAST of Carg13074 vs. NCBI nr
Match: XP_022982836.1 (uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima] >XP_022982844.1 uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima] >XP_022982853.1 uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima])

HSP 1 Score: 336.3 bits (861), Expect = 7.3e-89
Identity = 187/201 (93.03%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MA KPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MATKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMDARTSLRQGA AKRRSNFQGNQFALATEVAR AAVAPIRPRAFNR VPNWKKTRV
Sbjct: 61  LQRFMDARTSLRQGAFAKRRSNFQGNQFALATEVARKAAVAPIRPRAFNRWVPNWKKTRV 120

Query: 121 EAPPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLSXXXXXX 180
           EAPPVQRKPFNNGTFIPKI APVQTQ NATPRQ+PQTLDSLFANMKEQRLRVLS      
Sbjct: 121 EAPPVQRKPFNNGTFIPKIAAPVQTQTNATPRQKPQTLDSLFANMKEQRLRVLSQRQNGG 180

Query: 181 XXXXXXXXXXXPPWGRGRIAN 202
           XXXXXXXXXXXPPWGRGRI N
Sbjct: 181 XXXXXXXXXXXPPWGRGRIGN 201

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BLAST of Carg13074 vs. NCBI nr
Match: XP_004148996.1 (PREDICTED: uncharacterized protein LOC101210049 [Cucumis sativus] >KGN53410.1 hypothetical protein Csa_4G052600 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 6.4e-77
Identity = 155/175 (88.57%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMD+R+SLRQGALA RRSNFQGNQF LATEVAR AAVAPIRPRAF RR PNW KTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 121 EA-PPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLS 175
           EA PPV RKPF NG F+PK++AP Q Q N TPRQRPQTLDSLFANMKEQRLRVLS
Sbjct: 121 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLS 175

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BLAST of Carg13074 vs. NCBI nr
Match: XP_022136543.1 (uncharacterized protein LOC111008218 [Momordica charantia])

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 167/205 (81.46%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNK RKQRR PNK QKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKTRKQRRLPNKTQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMD+R+SLRQGALAK+RSNFQGNQF LA EVAR AAVAPIRPR FNRR PNW KTR 
Sbjct: 61  LQRFMDSRSSLRQGALAKKRSNFQGNQFPLAAEVARKAAVAPIRPRGFNRRAPNWSKTRF 120

Query: 121 EAPPVQRKPFNNGTFIPK--ITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLS--XX 180
           +APPVQRKPF NGTFIPK  I A  Q Q N  PRQRPQTLDSLFANMKEQRLRVLS    
Sbjct: 121 DAPPVQRKPFTNGTFIPKVAIAARAQPQTNTMPRQRPQTLDSLFANMKEQRLRVLSQRQN 180

Query: 181 XXXXXXXXXXXXXXXPPWGRGRIAN 202
                  XXXXXXX PPWGRGR  N
Sbjct: 181 GNGAPQRXXXXXXXRPPWGRGRFGN 205

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BLAST of Carg13074 vs. TAIR10
Match: AT4G23910.1 (unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 76/210 (36.19%), Postives = 105/210 (50.00%), Query Frame = 0


Query: 5   PLTTEAIAITEKKMDMALDDIIKMS--KNTGNKGRKQRRFPNKMQKFPNNATQDRPRKLQ 64
           PL  E IA+TEKK+ MALDDIIK++  K   NKG+           F N A ++    ++
Sbjct: 6   PLIAETIALTEKKVAMALDDIIKLAKRKTNVNKGKXXXXXXXXXXXF-NGAARNNTSNVR 65

Query: 65  RFMDARTSLRQGALAKRRSNFQGNQFALATEVAR---TAAVAPIRPRAFN-RRVPNWKKT 124
             M++ +++RQGA+ KRRS FQG QF + T +AR   TAA    R RAFN  R+ +  ++
Sbjct: 66  HHMNSLSAVRQGAVGKRRSRFQGIQFPVTTNIARKASTAAPLDFRGRAFNGGRMTSANQS 125

Query: 125 RVEAPPVQRKPFNNGTFIPKITAPVQTQPNATPRQ----------RPQTLDSLFANMKEQ 184
           R+ APPVQ                VQ + NA   +          + +TLDS FA+MKEQ
Sbjct: 126 RLIAPPVQ-------------NISVQARVNAKRHEVDQKVEHRGGKRKTLDSRFASMKEQ 185

Query: 185 RLRVLSXXXXXXXXXXXXXXXXXPPWGRGR 199
           R+ +                   PPW R R
Sbjct: 186 RMTI-------NNYGVTVQVPRLPPWVRAR 194

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BLAST of Carg13074 vs. TAIR10
Match: AT4G10970.6 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 18  MDMALDDIIKMSK-NTG-NKGRKQRRFPNKMQKFPNNATQDRPRKLQRFMDARTSLRQGA 77
           MDM+LD+IIKM K NT  NKG+KQR   NK +KF + A ++   K QR+MD+R+ +RQGA
Sbjct: 1   MDMSLDEIIKMEKSNTNVNKGKKQRVL-NKKEKF-SGAAKNSAVKAQRYMDSRSDVRQGA 60

Query: 78  LAKRRSNFQGNQFALATEVARTAAVAPIRPRAFN 110
            AK+RSNFQGNQF + T VAR AA A  R R +N
Sbjct: 61  FAKKRSNFQGNQFPVTTTVARKAASATPRGRPYN 92

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BLAST of Carg13074 vs. TrEMBL
Match: tr|A0A0A0KUX2|A0A0A0KUX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052600 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.2e-77
Identity = 155/175 (88.57%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMD+R+SLRQGALA RRSNFQGNQF LATEVAR AAVAPIRPRAF RR PNW KTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 121 EA-PPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLS 175
           EA PPV RKPF NG F+PK++AP Q Q N TPRQRPQTLDSLFANMKEQRLRVLS
Sbjct: 121 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPRQRPQTLDSLFANMKEQRLRVLS 175

[Close]

BLAST of Carg13074 vs. TrEMBL
Match: tr|A0A1S3BTH9|A0A1S3BTH9_CUCME (uncharacterized protein LOC103493102 OS=Cucumis melo OX=3656 GN=LOC103493102 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.6e-76
Identity = 154/175 (88.00%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120
           LQRFMD+R+SLRQGALA RRSNFQGNQFALATEVAR AAVAPIRPRAF RR PNW KTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 121 EA-PPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVLS 175
           +A PPV +K F NG F+PK++AP Q Q NATPRQRPQTLDSLFANMKEQRLRVLS
Sbjct: 121 DAPPPVPKKSFTNGNFVPKVSAPAQQQTNATPRQRPQTLDSLFANMKEQRLRVLS 175

[Close]

BLAST of Carg13074 vs. TrEMBL
Match: tr|I1LG92|I1LG92_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-50
Identity = 126/206 (61.17%), Postives = 142/206 (68.93%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  KQRR PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKSQKFSNNFTQDKSAK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNR-RVPNWKKTR 120
           +QR+M++R+SLRQGALAKRRSNFQGNQF  A EVAR A  AP+  R  NR RV NW KTR
Sbjct: 61  VQRYMESRSSLRQGALAKRRSNFQGNQFPAAVEVARKAVTAPLHNRVPNRNRVANWNKTR 120

Query: 121 VEAPPVQRKPFNNGTFIPK--ITAPVQTQPNA--TPRQRPQTLDSLFANMKEQRLRVLSX 180
            + P  QR+  N G F  K  + +P + Q N    P+Q+PQTLDSLFANMKEQR+RVLS 
Sbjct: 121 FQVPVGQRRAANGG-FAAKQPLPSPQKQQENVDIMPKQKPQTLDSLFANMKEQRMRVLSM 180

Query: 181 XXXXXXXXXXXXXXXXPPWGRGRIAN 202
                            PWGRGR  N
Sbjct: 181 QNNAVQRNGGGNRRL--PWGRGRFGN 201

[Close]

BLAST of Carg13074 vs. TrEMBL
Match: tr|I1LG91|I1LG91_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.4e-50
Identity = 126/207 (60.87%), Postives = 142/207 (68.60%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  KQRR PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKSQKFSNNFTQDKSAK 60

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNR-RVPNWKKTR 120
           +QR+M++R+SLRQGALAKRRSNFQGNQF  A EVAR A  AP+  R  NR RV NW KTR
Sbjct: 61  VQRYMESRSSLRQGALAKRRSNFQGNQFPAAVEVARKAVTAPLHNRVPNRNRVANWNKTR 120

Query: 121 VEAPPVQRKPFNNGTFIPK---ITAPVQTQPNA--TPRQRPQTLDSLFANMKEQRLRVLS 180
            + P  QR+  N G F  K   + +P + Q N    P+Q+PQTLDSLFANMKEQR+RVLS
Sbjct: 121 FQVPVGQRRAANGG-FAAKQQPLPSPQKQQENVDIMPKQKPQTLDSLFANMKEQRMRVLS 180

Query: 181 XXXXXXXXXXXXXXXXXPPWGRGRIAN 202
                             PWGRGR  N
Sbjct: 181 MQNNAVQRNGGGNRRL--PWGRGRFGN 202

[Close]

BLAST of Carg13074 vs. TrEMBL
Match: tr|A0A2P4JDU2|A0A2P4JDU2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31947 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 137/204 (67.16%), Postives = 157/204 (76.96%), Query Frame = 0


Query: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60
           MA KPLTTEAIA+TEKKMDMAL+DIIKMSKN  ++GRKQRR PNK+QKFPNN  QD+   
Sbjct: 10  MATKPLTTEAIALTEKKMDMALEDIIKMSKNPKSRGRKQRRVPNKIQKFPNNIAQDKSTT 69

Query: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAF-NRRVPNWKKTR 120
           ++R+MDAR+SLRQGALA+RRSNFQGNQF LA E AR AA AP+R RAF + R  NW KTR
Sbjct: 70  VRRYMDARSSLRQGALAQRRSNFQGNQFPLANEAARKAAAAPLRNRAFGHNRAANWNKTR 129

Query: 121 VEAPPVQRKPFNNGTFIPKITAPVQTQPNATPRQRPQTLDSLFANMKEQRLRVL----SX 180
              P +QR+  N G F+ K + P Q Q     +QR QTLDSLFANMKEQR+R L     X
Sbjct: 130 --GPLIQRRAANGG-FVAK-SMPPQQQAQPVTKQRSQTLDSLFANMKEQRMRNLPXXXXX 189

Query: 181 XXXXXXXXXXXXXXXXPPWGRGRI 200
           XXXXXXXXXXXXXXX PPW RGR+
Sbjct: 190 XXXXXXXXXXXXXXXRPPWARGRL 209

The following BLAST results are available for this feature:

BLAST of Carg13074 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941743.1	2.4e-92	96.02	uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_0229417...	[more]
XP_023528268.1	7.8e-91	95.02	uncharacterized protein LOC111791234 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022982836.1	7.3e-89	93.03	uncharacterized protein LOC111481570 isoform X1 [Cucurbita maxima] >XP_022982844...	[more]
XP_004148996.1	6.4e-77	88.57	PREDICTED: uncharacterized protein LOC101210049 [Cucumis sativus] >KGN53410.1 hy...	[more]
XP_022136543.1	1.9e-76	81.46	uncharacterized protein LOC111008218 [Momordica charantia]	[more]

BLAST of Carg13074 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23910.1	1.1e-17	36.19	unknown protein	[more]
AT4G10970.6	1.6e-16	57.45	unknown protein	[more]

BLAST of Carg13074 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13074 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUX2\|A0A0A0KUX2_CUCSA	4.2e-77	88.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052600 PE=4 SV=1	[more]
tr\|A0A1S3BTH9\|A0A1S3BTH9_CUCME	1.6e-76	88.00	uncharacterized protein LOC103493102 OS=Cucumis melo OX=3656 GN=LOC103493102 PE=...	[more]
tr\|I1LG92\|I1LG92_SOYBN	3.4e-50	61.17	Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1	[more]
tr\|I1LG91\|I1LG91_SOYBN	4.4e-50	60.87	Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1	[more]
tr\|A0A2P4JDU2\|A0A2P4JDU2_QUESU	2.9e-49	67.16	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31947 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13074-RA	Carg13074-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..201
None	No IPR available	PANTHER	PTHR36048	FAMILY NOT NAMED	coord: 1..196

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13074	Cla012807	Watermelon (97103) v1	carwmB0043
Carg13074	Csa4G052600	Cucumber (Chinese Long) v2	carcuB0044
Carg13074	MELO3C016298	Melon (DHL92) v3.5.1	carmeB0043
Carg13074	ClCG07G011580	Watermelon (Charleston Gray)	carwcgB0049
Carg13074	CSPI04G06420	Wild cucumber (PI 183967)	carcpiB0048
Carg13074	Cucsa.114970	Cucumber (Gy14) v1	carcgyB0051
Carg13074	CmaCh04G006830	Cucurbita maxima (Rimu)	carcmaB0055
Carg13074	CmaCh16G005420	Cucurbita maxima (Rimu)	carcmaB0054
Carg13074	CmoCh04G007290	Cucurbita moschata (Rifu)	carcmoB0058
Carg13074	CmoCh16G005940	Cucurbita moschata (Rifu)	carcmoB0056
Carg13074	Cp4.1LG14g02690	Cucurbita pepo (Zucchini)	carcpeB0058
Carg13074	CsGy4G006340	Cucumber (Gy14) v2	carcgybB0044
Carg13074	MELO3C016298.2	Melon (DHL92) v3.6.1	carmedB0044
Carg13074	CsaV3_4G006640	Cucumber (Chinese Long) v3	carcucB0049
Carg13074	Bhi01G002303	Wax gourd	carwgoB0049

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13074	Carg22252	Silver-seed gourd	carcarB049

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13074	Silver-seed gourd	carcarB048
Carg13074	Cucumber (Gy14) v2	carcgybB0048
Carg13074	Cucumber (Gy14) v1	carcgyB0056
Carg13074	Cucurbita maxima (Rimu)	carcmaB0051
Carg13074	Cucurbita moschata (Rifu)	carcmoB0053
Carg13074	Cucurbita pepo (Zucchini)	carcpeB0056
Carg13074	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13074	Wild cucumber (PI 183967)	carcpiB0052
Carg13074	Cucumber (Chinese Long) v2	carcuB0048
Carg13074	Cucumber (Chinese Long) v3	carcucB0053
Carg13074	Bottle gourd (USVL1VR-Ls)	carlsiB038
Carg13074	Bottle gourd (USVL1VR-Ls)	carlsiB040
Carg13074	Melon (DHL92) v3.5.1	carmeB0040
Carg13074	Melon (DHL92) v3.5.1	carmeB0045
Carg13074	Melon (DHL92) v3.6.1	carmedB0041
Carg13074	Melon (DHL92) v3.6.1	carmedB0046
Carg13074	Watermelon (Charleston Gray)	carwcgB0044
Carg13074	Watermelon (97103) v1	carwmB0049
Carg13074	Watermelon (97103) v2	carwmbB0041
Carg13074	Watermelon (97103) v2	carwmbB0045
Carg13074	Wax gourd	carwgoB0048