Carg22252 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22252
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosome maturation factor
Location	Cucurbita_argyrosperma_scaffold_174 : 321840 .. 325125 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGAGGATTTGCACCTATTGATCTACTTGCGTTTTTTTTTTCCCAAACTGTTACTTTTCTTTTAGTTCCGCACTAACCTTTTATTTTGAATCTCATGTTAGATGGCGGCTAAACCACTTACTACTGAGGCTATTGCCGTAACTGAGAAGAAGATGGACATGGCTTTAGGTTGGGCTTCGGAATATCTTTCAGTACTTGAGAATTTATGGGCCTCTTGAAAATTTATTGATTATTCTGTTTCTACATTTTTTTTGTTGTTGAATTAGACGATATTATCAAAATGTCCAAAAATACTGCAAATAAAGCCAGGAAGGAAAGAAGGTTTCCGGTAAGAATCTTTTATTTTTTGCTTGCCTTTAACCTGAGCAGTTTATTGTTGAAAGTGGAAGTATTCCTTTTATTATATGTGTAGTGATTTATCTTTCCATTTGCAGAACAAAATGCAGAAATTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGTTTCATGGATTCAAGATCTTCTGTAAGACAGGTTTGTACAGTTAGTTAGCTTGAATATCATTTATTTTGCTTTTTTTTTGTTTTTTTGTTTTTTTTTTTGTTTGTTTGTTGAGTTCCCATTTTTCATTTTGTATTTAGGGGGCTTTGGCCAAAAGAAGGTCAAATTTTCAAGGGAATCAGTTTGCTTTGACAACTGAGGTTGCAAGAAGGGCTGTAGTTGCTCCAACTCGCCCTAGAGCTTTTTATCGTAGGGCACCCAACTGGAATAAGACAAGGTATATCGAACTATACATTTTTAGCCTACGGAAAGCTCTCATTGTGAATTATGATTATATGTTTTACTTCAGCTACCCTGGCAACATACCGAAACTATATGATAGTTTTAAAGAAGAAATTTATTACAGAGGCAGTTTTAATTTGATGGCTGGTTTGTTTACTTTGTTATTTGATGCTATGACAGGTAAATCACGTTTATACACAATTGATGATTTCTACAGTGTCCATCAAGTTTTAAATATGAAGTTAGAAACATAATATGTTGGTTGGATAAGCTTGGATGATAAGTTTCAGTTGAATTGGAGTGGGTGTATTTCCAATTATTTCGTTTCTTCCATTCTACCTGGGAATTGATTCTGCTTTATCTTCTTAAGTTCGGTTCTGGAATGCATTGAGTTATCTTTTGGTTGTCTGACAAGTAAGTGCTTGGTGGGAGTTTCAGTTGCTGGGACAAAGATAATTTGAACTTTTGATTGAATTTGATTGCTGCGACCATCTGGAAAAATGTGGTTTGGTGAAAAGGGCTTTTGTGTTCATTGGATGAGTGTGTATAGTTTTGAGTTTTAGCTCCTTATTGAATGTGCTTATTGTCTTGGGTTTCACAAGTCTTCTTAGACAATCTACAATATTATAGCAGCCTCGTCCAGATTCCCTTTTGTTGCATTGATGTGGAAGCTGTTTGCAAGATGTGATGTTTTTAGAGCAGGAGTTGACTGAGATTGTGGCACATTCCCTTTAATGATTATTCCACAATTGTCTCTCTTCATCGTGTTCAAAGTTTGCTGTTGTGAACTTTCATTCCTGGTGGATGACAGTCGATAAAACTTTGTTTGCTTGCAATAAGGGATGCAAAGAACCCTAGGGGTTGTTGTGATGTCAGAATTTGCACATCTTTCTATGTTAGTGATCCGTCTGCTAGTTTTGTTGATTCCACTTGGTGTTCTCTTTTCGTTTGCTGTTACATCCTGGGTACATTTTTCAGCCTTCCAACTACCATGTCTTGACGAGTCTCTCAGTAATTCTACTTATTGAGTAACAGTAAAACTGCAAATGAGGAAACCCTTGACTATGGAAAGTTTTCCACTTATGAAAAAATGCTTCTTTATCCCTGTAGTCAGCCTGACCTGAGGAATATGACATCTCATCATCTTTAGTAGATACTTGGGGATGGAATTGAAATTGTTGCGAGTAAATCAAGAACTCTGTACTTCTGGTTATTTGTCGTTGCATAATTCTATGAATAACAAAAGTGCTGAAGAAATTAAGTACGGTTAGTTAAAATGTGTTGAACAATGGCTTTATGGCTTCTTCTATGAGGTATTATGTGTAGACTTCGGGTTTATCCACGTGGAATACACTAGTACTGCAGAAATTCATGCTACTGCCGCTTTTAAATCATATGCTGGTTGAAGCCTTCATTTTCTGGTTCAAGTTCCGGACAGGAGTCTTCCTGCGGAGCAGTTTATCTGTTCATTGATAATACTAGTTTGGAGCTTTCATTGTCCATTAAAGCAAGCCAAGCGTGCGATGATTGATTTGAGGTTCTGGTTTTGCTATTATAACTGGACAGTGCTTTTTTTGGATTGGCAAGCGCAACACATTTTGAGCTGATTCTCTTTTTTTGATGACTGCATTCTCATGATCTGGTTTGTTTTTTATTTCTGTTAATGCATTTGAATTTGCTCATCGAGGTAAGATTCTCTGATTATCTGCATCTTGCCGCTCAAGGAGTGTTGAAAAATATCTTGCGTTTGTGGTCTACTTATAAATGTTATTTCTTTTGTTCATCAATCATTTCAATAATCTTTGGTGCAGGGTTGATGCTCCACCGGTTCCAAGAAAGCCTTTTAATAATCGAACCTTTGTTCCCAAGGTACTGTGTTTGTAACTGAGTTTGGTCTGAAGCAGTGAAGTTACTCCATCAAATGAGATGATGAATTCAAGTTTGGATCGCAGTAGTTTAATCTCATTTATTCCCCCTTCTTCCCTTCTCCAGGTAGCTGCACCGGCCCAGCCACAAACAAATGCCACGCAGAGACAGAGACCACAAACAAATGCCACGCAGAGACAGAGACCACAAACTCTGGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTGAGGGTGTTGTCACAGCGACAGAATGGCGCCGCACAACAACGGAATGGTGGTCGCCAGCAAATACCTCCATGGCAAAGAGGCCGTTTTGGTAACTGAAGAACACGCCCACATGCCAACATCGTGTAATAAATGGAGTAATTGTATGGGAAATGTAGATGTTGCTTGCTTGTCCTCGGCCGATAGCTGATACCATCAAAAGAAAGGAATCTAGTTGTGTCTTGTCATTTTTTTTTTACCCAAACCTTTGGCTTGCTGTTTTTAGCGTTTCTAGCGTTTTTAGCATTTTTAGCATTTTTAGCTTCATTATGATCAAATGCTATAAAAGTTGTATCTGCCGTTCATGTAAAGTGTTCTTTTTATTTTAACTTACTGTTTCTGTTCTTATGGTCTAATT

mRNA sequence

CTCGAGGATTTGCACCTATTGATCTACTTGCGTTTTTTTTTTCCCAAACTGTTACTTTTCTTTTAGTTCCGCACTAACCTTTTATTTTGAATCTCATGTTAGATGGCGGCTAAACCACTTACTACTGAGGCTATTGCCGTAACTGAGAAGAAGATGGACATGGCTTTAGACGATATTATCAAAATGTCCAAAAATACTGCAAATAAAGCCAGGAAGGAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGTTTCATGGATTCAAGATCTTCTGTAAGACAGGGGGCTTTGGCCAAAAGAAGGTCAAATTTTCAAGGGAATCAGTTTGCTTTGACAACTGAGGTTGCAAGAAGGGCTGTAGTTGCTCCAACTCGCCCTAGAGCTTTTTATCGTAGGGCACCCAACTGGAATAAGACAAGGGTTGATGCTCCACCGGTTCCAAGAAAGCCTTTTAATAATCGAACCTTTGTTCCCAAGGTAGCTGCACCGGCCCAGCCACAAACAAATGCCACGCAGAGACAGAGACCACAAACAAATGCCACGCAGAGACAGAGACCACAAACTCTGGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTGAGGGTGTTGTCACAGCGACAGAATGGCGCCGCACAACAACGGAATGGTGGTCGCCAGCAAATACCTCCATGGCAAAGAGGCCGTTTTGGTAACTGAAGAACACGCCCACATGCCAACATCGTGTAATAAATGGAGTAATTGTATGGGAAATGTAGATGTTGCTTGCTTGTCCTCGGCCGATAGCTGATACCATCAAAAGAAAGGAATCTAGTTGTGTCTTGTCATTTTTTTTTTACCCAAACCTTTGGCTTGCTGTTTTTAGCCATTTTTAGCTTCATTATGATCAAATGCTATAAAAGTTGTATCTGCCGTTCATGTAAAGTGTTCTTTTTATTTTAACTTACTGTTTCTGTTCTTATGGTCTAATT

Coding sequence (CDS)

ATGGCGGCTAAACCACTTACTACTGAGGCTATTGCCGTAACTGAGAAGAAGATGGACATGGCTTTAGACGATATTATCAAAATGTCCAAAAATACTGCAAATAAAGCCAGGAAGGAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGTTTCATGGATTCAAGATCTTCTGTAAGACAGGGGGCTTTGGCCAAAAGAAGGTCAAATTTTCAAGGGAATCAGTTTGCTTTGACAACTGAGGTTGCAAGAAGGGCTGTAGTTGCTCCAACTCGCCCTAGAGCTTTTTATCGTAGGGCACCCAACTGGAATAAGACAAGGGTTGATGCTCCACCGGTTCCAAGAAAGCCTTTTAATAATCGAACCTTTGTTCCCAAGGTAGCTGCACCGGCCCAGCCACAAACAAATGCCACGCAGAGACAGAGACCACAAACAAATGCCACGCAGAGACAGAGACCACAAACTCTGGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTGAGGGTGTTGTCACAGCGACAGAATGGCGCCGCACAACAACGGAATGGTGGTCGCCAGCAAATACCTCCATGGCAAAGAGGCCGTTTTGGTAACTGA

Protein sequence

MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRKLQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRVDAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRQRPQTNATQRQRPQTLDSLFANMKEQRLRVLSQRQNGAAQQRNGGRQQIPPWQRGRFGN

Homology

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BLAST of Carg22252 vs. NCBI nr
Match: XP_022931361.1 (uncharacterized protein LOC111437568 [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 1.7e-96
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
           LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120

Query: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180
           DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL
Sbjct: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180

Query: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN
Sbjct: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 211

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BLAST of Carg22252 vs. NCBI nr
Match: XP_022985420.1 (uncharacterized protein LOC111483428 isoform X2 [Cucurbita maxima])

HSP 1 Score: 354.0 bits (907), Expect = 3.6e-94
Identity = 207/211 (98.10%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAVTEKKMDMALDDIIKMSK T NKARKERRFPNKMQKFPNN TQDRPRK
Sbjct: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKITGNKARKERRFPNKMQKFPNNVTQDRPRK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
           LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEV+RRAVVAPTRPRAFYRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVSRRAVVAPTRPRAFYRRAPNWNKTRV 120

Query: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180
           DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL
Sbjct: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180

Query: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN
Sbjct: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 211

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BLAST of Carg22252 vs. NCBI nr
Match: XP_022985419.1 (uncharacterized protein LOC111483428 isoform X1 [Cucurbita maxima])

HSP 1 Score: 345.9 bits (886), Expect = 9.7e-92
Identity = 207/221 (93.67%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAVTEKKMDMALDDIIKMSK T NKARKERRFPNKMQKFPNN TQDRPRK
Sbjct: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKITGNKARKERRFPNKMQKFPNNVTQDRPRK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
           LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEV+RRAVVAPTRPRAFYRRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVSRRAVVAPTRPRAFYRRAPNWNKTRV 120

Query: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQR----------XXXXXXXXXXXXXXXXDS 180
           DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQR          XXXXXXXXXXXXXXXXDS
Sbjct: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXXXXXXXXXXXDS 180

Query: 181 LFANMKEQRLRVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           LFANMKEQRLRVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN
Sbjct: 181 LFANMKEQRLRVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 221

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BLAST of Carg22252 vs. NCBI nr
Match: XP_023552872.1 (uncharacterized protein LOC111810397 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 194/211 (91.94%), Postives = 194/211 (91.94%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRF NKMQKFPNNATQDRP  
Sbjct: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFSNKMQKFPNNATQDRPFF 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
                        GALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV
Sbjct: 61  F------------GALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120

Query: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180
           DAPPVPRKPFNNRTFVPKVAAPAQPQTNAT RXXXXXXXXXXXXXXXXDSLFANMKEQRL
Sbjct: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATLRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180

Query: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN
Sbjct: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 199

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BLAST of Carg22252 vs. NCBI nr
Match: XP_022941743.1 (uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941744.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941747.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 162/211 (76.78%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDMALDDIIKMSKNT NK RK+RRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
           LQRFMD+R+S+RQGALAKRRSNFQGNQFAL TEVAR A VAP RPRAF RR PNW KTRV
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRV 120

Query: 121 DAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQRL 180
           +APPV RKPFNN TF+PK+ AP Q QTNAT R                DSLFANMKEQRL
Sbjct: 121 EAPPVQRKPFNNGTFIPKITAPVQTQTNATPR----------QRPQTLDSLFANMKEQRL 180

Query: 181 RVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           RVLSQRQNG   XXXX     PPW RGR GN
Sbjct: 181 RVLSQRQNGGXXXXXXXXXXXPPWGRGRIGN 201

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BLAST of Carg22252 vs. TAIR10
Match: AT4G23910.1 (unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-17
Identity = 76/210 (36.19%), Postives = 101/210 (48.10%), Query Frame = 0


Query: 5   PLTTEAIAVTEKKMDMALDDIIKMS--KNTANKARKERRFPNKMQKFPNNATQDRPRKLQ 64
           PL  E IA+TEKK+ MALDDIIK++  K   NK +           F N A ++    ++
Sbjct: 6   PLIAETIALTEKKVAMALDDIIKLAKRKTNVNKGKXXXXXXXXXXXF-NGAARNNTSNVR 65

Query: 65  RFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPT---RPRAFY-RRAPNWNKT 124
             M+S S+VRQGA+ KRRS FQG QF +TT +AR+A  A     R RAF   R  + N++
Sbjct: 66  HHMNSLSAVRQGAVGKRRSRFQGIQFPVTTNIARKASTAAPLDFRGRAFNGGRMTSANQS 125

Query: 125 RVDAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQ 184
           R+ APPV                  Q + NA +                 DS FA+MKEQ
Sbjct: 126 RLIAPPVQN-------------ISVQARVNAKRHEVDQKVEHRGGKRKTLDSRFASMKEQ 185

Query: 185 RLRVLSQRQNGAAQXXXXGRQQIPPWQRGR 209
           R+ +     N         R  +PPW R R
Sbjct: 186 RMTI-----NNYGVTVQVPR--LPPWVRAR 194

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BLAST of Carg22252 vs. TAIR10
Match: AT4G10970.6 (unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-17
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 18  MDMALDDIIKMSKNTANKAR-KERRFPNKMQKFPNNATQDRPRKLQRFMDSRSSVRQGAL 77
           MDM+LD+IIKM K+  N  + K++R  NK +KF + A ++   K QR+MDSRS VRQGA 
Sbjct: 1   MDMSLDEIIKMEKSNTNVNKGKKQRVLNKKEKF-SGAAKNSAVKAQRYMDSRSDVRQGAF 60

Query: 78  AKRRSNFQGNQFALTTEVARRAVVAPTRPRAF 109
           AK+RSNFQGNQF +TT VAR+A  A  R R +
Sbjct: 61  AKKRSNFQGNQFPVTTTVARKAASATPRGRPY 91

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BLAST of Carg22252 vs. TrEMBL
Match: tr|A0A0A0KUX2|A0A0A0KUX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052600 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.8e-70
Identity = 150/187 (80.21%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDMALDDIIKMSKNT NK RK+RR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
           LQRFMDSRSS+RQGALA RRSNFQGNQF L TEVAR+A VAP RPRAF RRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFPLATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 121 DA-PPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQR 180
           +A PPVPRKPF N  FVPKV+APAQPQTN T R                DSLFANMKEQR
Sbjct: 121 EAHPPVPRKPFTNGNFVPKVSAPAQPQTNTTPR----------QRPQTLDSLFANMKEQR 177

Query: 181 LRVLSQR 187
           LRVLSQR
Sbjct: 181 LRVLSQR 177

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BLAST of Carg22252 vs. TrEMBL
Match: tr|A0A1S3BTH9|A0A1S3BTH9_CUCME (uncharacterized protein LOC103493102 OS=Cucumis melo OX=3656 GN=LOC103493102 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.4e-69
Identity = 149/186 (80.11%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDMALDDIIKMSKNT NK RK+RR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRV 120
           LQRFMDSRSS+RQGALA RRSNFQGNQFAL TEVAR+A VAP RPRAF RRAPNWNKTRV
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRAFTRRAPNWNKTRV 120

Query: 121 DA-PPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQR 180
           DA PPVP+K F N  FVPKV+APAQ QTNAT R                DSLFANMKEQR
Sbjct: 121 DAPPPVPKKSFTNGNFVPKVSAPAQQQTNATPR----------QRPQTLDSLFANMKEQR 176

Query: 181 LRVLSQ 186
           LRVLSQ
Sbjct: 181 LRVLSQ 176

[Close]

BLAST of Carg22252 vs. TrEMBL
Match: tr|I1LG91|I1LG91_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 123/212 (58.02%), Postives = 138/212 (65.09%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  K+RR PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKSQKFSNNFTQDKSAK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYR-RAPNWNKTR 120
           +QR+M+SRSS+RQGALAKRRSNFQGNQF    EVAR+AV AP   R   R R  NWNKTR
Sbjct: 61  VQRYMESRSSLRQGALAKRRSNFQGNQFPAAVEVARKAVTAPLHNRVPNRNRVANWNKTR 120

Query: 121 VDAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQR 180
              P   R+  N        AA  QP   + Q+                DSLFANMKEQR
Sbjct: 121 FQVPVGQRRAANG-----GFAAKQQP-LPSPQKQQENVDIMPKQKPQTLDSLFANMKEQR 180

Query: 181 LRVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           +RVLS  QN A Q    G +++ PW RGRFGN
Sbjct: 181 MRVLSM-QNNAVQRNGGGNRRL-PWGRGRFGN 202

[Close]

BLAST of Carg22252 vs. TrEMBL
Match: tr|I1LG92|I1LG92_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 122/212 (57.55%), Postives = 137/212 (64.62%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  K+RR PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKSQKFSNNFTQDKSAK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYR-RAPNWNKTR 120
           +QR+M+SRSS+RQGALAKRRSNFQGNQF    EVAR+AV AP   R   R R  NWNKTR
Sbjct: 61  VQRYMESRSSLRQGALAKRRSNFQGNQFPAAVEVARKAVTAPLHNRVPNRNRVANWNKTR 120

Query: 121 VDAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQR 180
              P   R+  N   F  K   P      + Q+                DSLFANMKEQR
Sbjct: 121 FQVPVGQRRAANG-GFAAKQPLP------SPQKQQENVDIMPKQKPQTLDSLFANMKEQR 180

Query: 181 LRVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           +RVLS  QN A Q    G +++ PW RGRFGN
Sbjct: 181 MRVLSM-QNNAVQRNGGGNRRL-PWGRGRFGN 201

[Close]

BLAST of Carg22252 vs. TrEMBL
Match: tr|V7CMT3|V7CMT3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G164100g PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.9e-45
Identity = 121/212 (57.08%), Postives = 139/212 (65.57%), Query Frame = 0


Query: 1   MAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRK 60
           MAAKPLTTEAIA+TEKKMDM LDDIIKMSKN  NK  K+RR PNK QKF NN TQD+  K
Sbjct: 1   MAAKPLTTEAIALTEKKMDMTLDDIIKMSKNPKNK--KQRRVPNKTQKFANNFTQDKSAK 60

Query: 61  LQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYR-RAPNWNKTR 120
           ++R+M+SRSS+RQGA+AKRRSNFQGNQF    EVAR+A +AP + R   R R  NWNKTR
Sbjct: 61  VKRYMESRSSIRQGAIAKRRSNFQGNQFPAAVEVARKAAIAPLQNRVPNRNRVSNWNKTR 120

Query: 121 VDAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRXXXXXXXXXXXXXXXXDSLFANMKEQR 180
              P   R+  N        AA  QP   + Q+                DSLFANMKEQR
Sbjct: 121 FRVPVGQRRAVNG-----GFAAKHQP-IPSPQKHLANVDIMPKQKPQTLDSLFANMKEQR 180

Query: 181 LRVLSQRQNGAAQXXXXGRQQIPPWQRGRFGN 212
           +RVLS  QN A Q    G ++I PW RGRFGN
Sbjct: 181 MRVLSM-QNNAVQRNGNGNRRI-PWGRGRFGN 202

The following BLAST results are available for this feature:

BLAST of Carg22252 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931361.1	1.7e-96	100.00	uncharacterized protein LOC111437568 [Cucurbita moschata]	[more]
XP_022985420.1	3.6e-94	98.10	uncharacterized protein LOC111483428 isoform X2 [Cucurbita maxima]	[more]
XP_022985419.1	9.7e-92	93.67	uncharacterized protein LOC111483428 isoform X1 [Cucurbita maxima]	[more]
XP_023552872.1	2.2e-83	91.94	uncharacterized protein LOC111810397 [Cucurbita pepo subsp. pepo]	[more]
XP_022941743.1	2.0e-76	76.78	uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_0229417...	[more]

BLAST of Carg22252 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23910.1	5.6e-17	36.19	unknown protein	[more]
AT4G10970.6	9.5e-17	55.43	unknown protein	[more]

BLAST of Carg22252 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22252 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUX2\|A0A0A0KUX2_CUCSA	1.8e-70	80.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052600 PE=4 SV=1	[more]
tr\|A0A1S3BTH9\|A0A1S3BTH9_CUCME	3.4e-69	80.11	uncharacterized protein LOC103493102 OS=Cucumis melo OX=3656 GN=LOC103493102 PE=...	[more]
tr\|I1LG91\|I1LG91_SOYBN	2.0e-45	58.02	Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1	[more]
tr\|I1LG92\|I1LG92_SOYBN	3.4e-45	57.55	Uncharacterized protein OS=Glycine max OX=3847 GN=102659628 PE=4 SV=1	[more]
tr\|V7CMT3\|V7CMT3_PHAVU	5.9e-45	57.08	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G164100g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22252-RA	Carg22252-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..200
None	No IPR available	PANTHER	PTHR36048	FAMILY NOT NAMED	coord: 1..211

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22252	Csa4G052600	Cucumber (Chinese Long) v2	carcuB0617
Carg22252	MELO3C016298	Melon (DHL92) v3.5.1	carmeB0595
Carg22252	CSPI04G06420	Wild cucumber (PI 183967)	carcpiB0623
Carg22252	CmaCh04G006830	Cucurbita maxima (Rimu)	carcmaB0826
Carg22252	CmaCh16G005420	Cucurbita maxima (Rimu)	carcmaB0825
Carg22252	CmoCh04G007290	Cucurbita moschata (Rifu)	carcmoB0804
Carg22252	CmoCh16G005940	Cucurbita moschata (Rifu)	carcmoB0803
Carg22252	Lsi07G007220	Bottle gourd (USVL1VR-Ls)	carlsiB536
Carg22252	Cp4.1LG14g02690	Cucurbita pepo (Zucchini)	carcpeB0838
Carg22252	CsGy4G006340	Cucumber (Gy14) v2	carcgybB0589
Carg22252	MELO3C016298.2	Melon (DHL92) v3.6.1	carmedB0602
Carg22252	CsaV3_4G006640	Cucumber (Chinese Long) v3	carcucB0624
Carg22252	Bhi01G002303	Wax gourd	carwgoB0701

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22252	Carg13074	Silver-seed gourd	carcarB049

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22252	Melon (DHL92) v3.6.1	carmedB0603