CsGy4G004070 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G004070
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ubiquitin carboxyl-terminal hydrolase 12-like isoform X2
Location	Chr4 : 2635612 .. 2638524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAAGAAAAGCAAATCAAACATTGAGATTATTATGGATGATAATATGTCATATGATGATACTACAAAAATAGATGAACGACAACACGGTATATTACTACTTCAAATTATTTTATTATATTGTTAACTTTATATCCACTTCTCTTAGTGTCCAATATTTTTTTCGATTATGTTATTTGCAACCTAAGTACACAAGGTTTGGCAAACTTTAGAAGAAAAGAATAATAACCCAAATTATTTTGGTTTACTAATGTTGATATTATTTAATTTAATTTGCATATCTTTTTTTTATGCAGAAATTACAATTAAATCGAGGAGGGTTGATCCACCATCTCATTATGCATTTCAAATTGATTCTTACTCGGTGCTTTCACAAATTGAGATGAAGAAATGTGAATCTGGAGACTTTGAAGTTGACGGCTACAAGTGGTAAATTTGGGAACCAAACTTATAATTTTGAAAATACTTTATATTTTAGATTGAAATTAAACATGATTTAATATATCATATCAACTAGGGTTTAAGGCATCATAATTAATTAATCTCTCTATTTCTTATATATATGTGTGTGCTAGGAAATTAATTTTATATCCAAATGGAAACGAAGAAGTGGAAGATCATATTTCTCTCTTCTTGGCTGTATCAACTAATGATAATAATCTTCCTCTTGGTTGGGAACTGAGGGTAATTTTCAGATTCTTTATATTTGATCAAATCAGAGATAACTATTTAACAATCCAAGGTAATTTTTTTCATATTACTTTTCTAATTATATGGTGTTCTTACTGATCTTGTTGTCATCTGCATGTTTCTTGTTAAAAATATTAAAGGTCGAGAGACTCAGGCGAACCTATAATAAAATAAACAAAACCCTAAACCCTAGAAATATGTATTGGTTTTGCAGATGGGAAAATGAGGAAGTATTCTAAAATGAAGAGTGAACATGGATTCACTCACTTGATTTCTCATAATGTTTTCAATAAAGCCTCCAGTGGCTTCCTTGTGAGTAATTGTTGTACATTTGGGGTTGAAGTTTCTATACTTAAAGCCTCAAACAAGGGAGAGAGATTAACCATTTTAAAAGAGCCTCAACAAGACACTTATTTTTGGACTCTATACTCATTTTCTGCTTTAAAGCAACCATTTTATATCTCAGAACCCTTCAATGTCAAAGGAAGAAAATGGTTAGTGAAAAAAGCTCCTGTAAACTAATCTTTTGTGTTTTATCTTTTTCAAAAACTACCAATTTAAATGCTTAAAATTTTAGGAGTTATGTATCAAATTAAACCCTAAATTTATTTTGTGGATGCATCAATTTATGCCATTGATTACATAGTTTAGAAAAATCTAGCGTGAAAGTTTTGGTTTTGAACAAGAAACTAAAAGGACGTGATGAATCAATTTATAATTCATCAATGAATGAATGTAACTTTTCTAAGTGATCTGGATTCCCTTGAATTAGTATAGTACAATTTGTAAAAATTGACATTTAAAAAAGTATGCATTTGTTTTGAGAAGTAATGTATTAATAATTTTCAAAGGCACATAGTACTGAATGTATGAAAATTAAAGAGTTTAATTGACTAACTCAAAAACTTAGGATTTAAAATTTATACAATTAATATAACTTTAAAGTTTAAGTATAAATTGAATCTTTACAGAAAAAAAAAAAAAAAAAGTCTGACTCCTTATCTTTGTTTTGATTTATTAGGAGAATGGAGGTGTACCCACATGGTAATTCCTTGGGAAAGACTTCACATATATCTCTTTACTTGAAGTTGGATAGTTCAGAGACCATTCCTTTGGGGAAGAAAATCTATGCAAAATTTATCCTTGGTGTTTATAACTTTTCAGCCAAAAAATATATTGACAAATCATGTAAGGTCTTTTAATTGAAATTAATTTCCAAATATTTTTTTCTCTTTAGGTTCTTATGTTATGTGACATTATTATTATTATTATAATTGGATTTTGCAGATGAACATTGGTATAAAACCCCAGGTCATGGCAATGGTTTTGATGAGTTCTTGTCCAGAAAAGAAATTAGTACTCATTCGCAAAATGATGCTTTCTATCTCAAAGCTAGAATTGTGGCCATGTCAACTGTGGAAGAATTTTGATAATTCATGGGCATCATTTATCTTGAAAGTTTACAATGTCGTCTACGCTTAGACATTATTACTGCACATGATATTGAATTGTGTTTAAAGTAATATAATGTTGGTAAATAAATAATGGACTTGAGCTAGATGTTAATTATTTCTCTCCCCCTCCTTATCTTGTTTCCATATATCTATTCTTAAATAATGAAGATGAATTTTTCTTTTTGTAATAAACAAAGGGAGAGACAATGGTAAGAGTTTAGAAACACACTCCTGTTTGACTACAAGAACTCTATGGTATGCACCTCTCCAACAGAGTACAACAGTTGCATGCCATTATCTCTCCAATTGATATTATTGACGACGTACAAAACTGTGTTTTATTTCTCTTGGACGTAATTAAAAGCAGACAATGCCTAGTTTAGAAATGACGAACTGCAGAAACTGTTGACAACAACGGCTGTCTTCTCCAATGAGTATTGTGTTACCTTCTGATCTCCAGGGTCTTAAGAGAGGGGATGATGCATAAAGTTGGGTGCGTGGGAATGAGAGAGAGAGGAAGAATGAAATTAGGTTTCTAATTTTTTCAGTTTTTTCTTAATTTTATTTGTACGTGTTTTTATATTTATATTTGTTTCATTATTCCATGTCGTTAACGTATTTGGTCCTTATTATTTGTTAAAAGTTACTATTAGGTTCTCGTACTTTCAAAAGTAATGAACAATTTAGTTCTTATACTTTAAATTGATTACGATATTAAGTCTTTATCGTTGAAGGTGATATTAATATTTACCAGAAATTTGATGTTGC

mRNA sequence

GAAGAAAGAAAAGCAAATCAAACATTGAGATTATTATGGATGATAATATGTCATATGATGATACTACAAAAATAGATGAACGACAACACGAAATTACAATTAAATCGAGGAGGGTTGATCCACCATCTCATTATGCATTTCAAATTGATTCTTACTCGGTGCTTTCACAAATTGAGATGAAGAAATGTGAATCTGGAGACTTTGAAGTTGACGGCTACAAGTGGAGAATGGAGGTGTACCCACATGGTAATTCCTTGGGAAAGACTTCACATATATCTCTTTACTTGAAGTTGGATAGTTCAGAGACCATTCCTTTGGGGAAGAAAATCTATGCAAAATTTATCCTTGGTGTTTATAACTTTTCAGCCAAAAAATATATTGACAAATCATGTAAGATGAACATTGGTATAAAACCCCAGGTCATGGCAATGGTTTTGATGAGTTCTTGTCCAGAAAAGAAATTAGTACTCATTCGCAAAATGATGCTTTCTATCTCAAAGCTAGAATTGTGGCCATGTCAACTGTGGAAGAATTTTGATAATTCATGGGCATCATTTATCTTGAAAGTTTACAATGTCGTCTACGCTTAGACATTATTACTGCACATGATATTGAATTGTGTTTAAAGTAATATAATGTTGGTAAATAAATAATGGACTTGAGCTAGATGTTAATTATTTCTCTCCCCCTCCTTATCTTGTTTCCATATATCTATTCTTAAATAATGAAGATGAATTTTTCTTTTTGTAATAAACAAAGGGAGAGACAATGGTAAGAGTTTAGAAACACACTCCTGTTTGACTACAAGAACTCTATGGTATGCACCTCTCCAACAGAGTACAACAGTTGCATGCCATTATCTCTCCAATTGATATTATTGACGACGTACAAAACTGTGTTTTATTTCTCTTGGACGTAATTAAAAGCAGACAATGCCTAGTTTAGAAATGACGAACTGCAGAAACTGTTGACAACAACGGCTGTCTTCTCCAATGAGTATTGTGTTACCTTCTGATCTCCAGGGTCTTAAGAGAGGGGATGATGCATAAAGTTGGGTGCGTGGGAATGAGAGAGAGAGGAAGAATGAAATTAGGTTTCTAATTTTTTCAGTTTTTTCTTAATTTTATTTGTACGTGTTTTTATATTTATATTTGTTTCATTATTCCATGTCGTTAACGTATTTGGTCCTTATTATTTGTTAAAAGTTACTATTAGGTTCTCGTACTTTCAAAAGTAATGAACAATTTAGTTCTTATACTTTAAATTGATTACGATATTAAGTCTTTATCGTTGAAGGTGATATTAATATTTACCAGAAATTTGATGTTGC

Coding sequence (CDS)

ATGGATGATAATATGTCATATGATGATACTACAAAAATAGATGAACGACAACACGAAATTACAATTAAATCGAGGAGGGTTGATCCACCATCTCATTATGCATTTCAAATTGATTCTTACTCGGTGCTTTCACAAATTGAGATGAAGAAATGTGAATCTGGAGACTTTGAAGTTGACGGCTACAAGTGGAGAATGGAGGTGTACCCACATGGTAATTCCTTGGGAAAGACTTCACATATATCTCTTTACTTGAAGTTGGATAGTTCAGAGACCATTCCTTTGGGGAAGAAAATCTATGCAAAATTTATCCTTGGTGTTTATAACTTTTCAGCCAAAAAATATATTGACAAATCATGTAAGATGAACATTGGTATAAAACCCCAGGTCATGGCAATGGTTTTGATGAGTTCTTGTCCAGAAAAGAAATTAGTACTCATTCGCAAAATGATGCTTTCTATCTCAAAGCTAGAATTGTGGCCATGTCAACTGTGGAAGAATTTTGATAATTCATGGGCATCATTTATCTTGAAAGTTTACAATGTCGTCTACGCTTAG

Protein sequence

MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGKTSHISLYLKLDSSETIPLGKKIYAKFILGVYNFSAKKYIDKSCKMNIGIKPQVMAMVLMSSCPEKKLVLIRKMMLSISKLELWPCQLWKNFDNSWASFILKVYNVVYA

Homology

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BLAST of CsGy4G004070 vs. NCBI nr
Match: XP_008453869.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 109/186 (58.60%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           MDDNMSYD++ K DERQHEITIKSRRVDPPSHYAFQIDSYSVLS+IEMKKCESGDFEVDG
Sbjct: 1   MDDNMSYDESIK-DERQHEITIKSRRVDPPSHYAFQIDSYSVLSEIEMKKCESGDFEVDG 60

Query: 61  Y----------------------------------------------------------- 119
           Y                                                           
Sbjct: 61  YMCKASNGFLVNNSCTFGVEVSILKASNKGERLTIFREPQQDTYFWTLYSFSAKTNQSYI 120

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BLAST of CsGy4G004070 vs. NCBI nr
Match: XP_008453868.1 (PREDICTED: uncharacterized protein LOC103494460 isoform X1 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 4.6e-37
Identity = 109/268 (40.67%), Postives = 116/268 (43.28%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           MDDNMSYD++ K DERQHEITIKSRRVDPPSHYAFQIDSYSVLS+IEMKKCESGDFEVDG
Sbjct: 1   MDDNMSYDESIK-DERQHEITIKSRRVDPPSHYAFQIDSYSVLSEIEMKKCESGDFEVDG 60

Query: 61  Y----------------------------------------------------------- 119
           Y                                                           
Sbjct: 61  YMWKLILYPNGNGEVEDHISLFLAISTNDNNNLPLGWEVRVIFRFFIFDQIRDNYLTIQD 120

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BLAST of CsGy4G004070 vs. NCBI nr
Match: XP_011653084.1 (PREDICTED: probable inactive serine/threonine-protein kinase fnkC [Cucumis sativus] >KGN53168.1 hypothetical protein Csa_4G023030 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.1e-34
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG
Sbjct: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60

Query: 61  YKWRMEVYPHGNSLGKTSHISLYLKLDSSE-TIPLGKKIYAKFILGVYNFSAKKYI 116
           YKW++ +YP+GN      HISL+L + +++  +PLG ++   F   +++     Y+
Sbjct: 61  YKWKLILYPNGNE-EVEDHISLFLAVSTNDNNLPLGWELRVIFRFFIFDQIRDNYL 115

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BLAST of CsGy4G004070 vs. NCBI nr
Match: XP_023529004.1 (speckle-type POZ protein-like A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           M DNMSYDD  K  E+Q EIT ++RRV+PP++Y FQI+SYS LS+I MKKCESG+F VDG
Sbjct: 1   MVDNMSYDDPIK-REQQPEIT-RTRRVEPPANYTFQINSYSTLSEIGMKKCESGNFAVDG 60

Query: 61  YKWRMEVYPHGNSLGKTSHISLYLKLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           Y W++ +YP+G+      HISLYL + S + +PLG ++   F   VY+     Y+
Sbjct: 61  YNWKLILYPNGDD-EVEDHISLYLAIISKDNLPLGWEVKVIFRFFVYDRIKDNYL 112

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BLAST of CsGy4G004070 vs. NCBI nr
Match: XP_022941740.1 (speckle-type POZ protein-like A [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           M DNMSYDD  K  E+Q EIT ++RR +PP++Y FQI+SYS LS+I MKKCESG+F VDG
Sbjct: 1   MVDNMSYDDPIK-HEQQPEIT-RTRRAEPPANYTFQINSYSTLSEIGMKKCESGNFAVDG 60

Query: 61  YKWRMEVYPHGNSLGKTSHISLYLKLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           + W++ +YP+G+      HISLYL + S + +PLG ++   F   VY+     Y+
Sbjct: 61  FNWKLILYPNGDD-EVEDHISLYLAITSKDNLPLGWEVKVIFRFFVYDRIKDNYL 112

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BLAST of CsGy4G004070 vs. TAIR10
Match: AT3G17380.1 (TRAF-like family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 22  IKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGKT-SHI 81
           IKS    PP+HY  +I+S+S+L++  +++ E+  FE  GYKW++ +YP+GN    T  H+
Sbjct: 11  IKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKNTKDHV 70

Query: 82  SLYLKLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           S+YL L  S ++  G ++YA F L + + +   Y+
Sbjct: 71  SVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYL 105

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BLAST of CsGy4G004070 vs. TAIR10
Match: AT5G26260.1 (TRAF-like family protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 4   NMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKW 63
           N SY  T+ +      +T +  R + PS     I S+SV+     +  ES  FE  GYKW
Sbjct: 39  NNSYSLTSNLG-----VTTRELRDERPSSKIVTITSFSVIKD-RGEPYESSIFEAAGYKW 98

Query: 64  RMEVYPHGNSLGK-TSHISLYLKLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           R+ +Y  GN  G   +HISLY +++ +ET+P G ++     L V+N   KKY+
Sbjct: 99  RLVLYVKGNPKGGINNHISLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYL 145

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BLAST of CsGy4G004070 vs. TAIR10
Match: AT2G04170.1 (TRAF-like family protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 26  RVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGN-SLGKTSHISLYL 85
           R + PS+    I S+SV+     +  ES  FE  GYKWR+ +Y +GN + G  +HISLY+
Sbjct: 125 RDERPSNKILTITSFSVIKG-RGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHISLYV 184

Query: 86  KLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           +++ +E++P G ++  +  L VYN   +KY+
Sbjct: 185 RIEETESLPKGWEVNVELKLFVYNGKQRKYL 214

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BLAST of CsGy4G004070 vs. TAIR10
Match: AT5G26290.1 (TRAF-like family protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 26  RVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGNSL-GKTSHISLYL 85
           R D PS     I S+S++ +   +  ES  FE  GYKWR+ +Y +GN   G   H+SLY 
Sbjct: 48  RDDRPSDKILSITSFSII-RTRPEPYESSVFEAVGYKWRLVLYVNGNEKDGGKDHVSLYA 107

Query: 86  KLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           K+  +E++P+G ++     L VYN    KY+
Sbjct: 108 KIVETESLPVGWEVNVDLKLFVYNGKLNKYL 137

[Close]

BLAST of CsGy4G004070 vs. TAIR10
Match: AT3G28220.1 (TRAF-like family protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.9e-10
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 26  RVDPPSHYAFQIDSY-SVLSQIEMKKCESGDFEVDGYKWRMEVYPHGN--SLGKTSHISL 85
           RV PPS Y  +I+S+    +    +K ES  FE  GY W + VYP GN       +++S+
Sbjct: 76  RVIPPSTYCLKIESFIKFATSPNAEKYESRPFESGGYNWTLIVYPKGNIKEGAPLNYVSM 135

Query: 86  YLKLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
           Y+++D+S  +   K++YA+    +YN    KY+
Sbjct: 136 YVQIDNSTLLNSPKEVYAEVKFFIYNRKEDKYL 168

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BLAST of CsGy4G004070 vs. Swiss-Prot
Match: sp|Q9M2J1|MCC19_ARATH (MATH domain and coiled-coil domain-containing protein At3g58250 OS=Arabidopsis thaliana OX=3702 GN=At3g58250 PE=4 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 44  SQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGKTSHISLYLKLDSSETIPLGKKIYAKFI 103
           S ++ +K  S  F +DG +WR+  +P GN   K+ H+SLYL +  SE++P G + +A+F 
Sbjct: 19  SSLQSEKIYSDQFVIDGCRWRLLAFPKGNDT-KSDHLSLYLDVAESESLPCGWRRHAQFS 78

Query: 104 LGVYNFSAKK 114
             + N   +K
Sbjct: 79  FTIVNHIPEK 87

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BLAST of CsGy4G004070 vs. Swiss-Prot
Match: sp|Q84WU2|UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-06
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 28  DPPS-HYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGKTSHISLYLKL 87
           DPPS  + + I  +   +++  +K  S  F V GYKWR+ ++P GN++    H+S+YL +
Sbjct: 50  DPPSLKFTWTIPMF---TRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDV 109

Query: 88  DSSETIPLGKKIYAKFILGVYNFSAKKY 115
             +  +P G   Y++F L V N    +Y
Sbjct: 110 ADAANLPYGWSRYSQFSLAVVNQVNNRY 131

[Close]

BLAST of CsGy4G004070 vs. Swiss-Prot
Match: sp|Q9FPT1|UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 44  SQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGKTSHISLYLKLDSSETIPLGKKIYAKFI 103
           S+   +K  S  F V GYKWR+ ++P GN++    H+S+YL +  + ++P G   YA+F 
Sbjct: 65  SRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPYGWSRYAQFS 124

Query: 104 LGVYNFSAKKY 115
           L V N    +Y
Sbjct: 125 LAVVNQIHTRY 132

[Close]

BLAST of CsGy4G004070 vs. Swiss-Prot
Match: sp|Q9M2I9|MCC21_ARATH (MATH domain and coiled-coil domain-containing protein At3g58270 OS=Arabidopsis thaliana OX=3702 GN=At3g58270 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 44  SQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGKTSHISLYLKLDSSETIPLGKKIYAKFI 103
           S  + +K  S +F VDG KWR+  +P GN + K   +SLYL +  SE +P G + +A F 
Sbjct: 17  SSQQSRKNYSDEFFVDGCKWRLLAFPKGNGVEK---LSLYLAVAGSEFLPDGWRRHAYFH 76

Query: 104 LGVYN 109
             V N
Sbjct: 77  FSVVN 78

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BLAST of CsGy4G004070 vs. TrEMBL
Match: tr|A0A1S3BWR3|A0A1S3BWR3_CUCME (ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494460 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-47
Identity = 109/186 (58.60%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           MDDNMSYD++ K DERQHEITIKSRRVDPPSHYAFQIDSYSVLS+IEMKKCESGDFEVDG
Sbjct: 1   MDDNMSYDESIK-DERQHEITIKSRRVDPPSHYAFQIDSYSVLSEIEMKKCESGDFEVDG 60

Query: 61  Y----------------------------------------------------------- 119
           Y                                                           
Sbjct: 61  YMCKASNGFLVNNSCTFGVEVSILKASNKGERLTIFREPQQDTYFWTLYSFSAKTNQSYI 120

[Close]

BLAST of CsGy4G004070 vs. TrEMBL
Match: tr|A0A1S3BYG6|A0A1S3BYG6_CUCME (uncharacterized protein LOC103494460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494460 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.0e-37
Identity = 109/268 (40.67%), Postives = 116/268 (43.28%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           MDDNMSYD++ K DERQHEITIKSRRVDPPSHYAFQIDSYSVLS+IEMKKCESGDFEVDG
Sbjct: 1   MDDNMSYDESIK-DERQHEITIKSRRVDPPSHYAFQIDSYSVLSEIEMKKCESGDFEVDG 60

Query: 61  Y----------------------------------------------------------- 119
           Y                                                           
Sbjct: 61  YMWKLILYPNGNGEVEDHISLFLAISTNDNNNLPLGWEVRVIFRFFIFDQIRDNYLTIQD 120

[Close]

BLAST of CsGy4G004070 vs. TrEMBL
Match: tr|A0A0A0KUE1|A0A0A0KUE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G023030 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60
           MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG
Sbjct: 1   MDDNMSYDDTTKIDERQHEITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDG 60

Query: 61  YKWRMEVYPHGNSLGKTSHISLYLKLDSSE-TIPLGKKIYAKFILGVYNFSAKKYI 116
           YKW++ +YP+GN      HISL+L + +++  +PLG ++   F   +++     Y+
Sbjct: 61  YKWKLILYPNGNE-EVEDHISLFLAVSTNDNNLPLGWELRVIFRFFIFDQIRDNYL 115

[Close]

BLAST of CsGy4G004070 vs. TrEMBL
Match: tr|A0A2C9VKS0|A0A2C9VKS0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G073700 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 29  PPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGN-SLGKTSHISLYLKLD 88
           PP+HY F+I+++S LS  +++  +S DFEV GYKWR+ +YP GN  + +  H+SLYL L 
Sbjct: 53  PPAHYIFKIENFSHLSAAKVESYDSSDFEVGGYKWRLSLYPKGNKKVNENEHVSLYLVLS 112

Query: 89  SSETIPLGKKIYAKFILGVYNFSAKKYI 116
           SS T+PL +++   F L VYN    KY+
Sbjct: 113 SSNTLPLHREVNVYFKLFVYNQILDKYL 140

[Close]

BLAST of CsGy4G004070 vs. TrEMBL
Match: tr|A9PEN0|A9PEN0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G103200v3 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 19  EITIKSRRVDPPSHYAFQIDSYSVLSQIEMKKCESGDFEVDGYKWRMEVYPHGNSLGK-T 78
           EIT +S R  PP+HY F+I+++S+L+  ++   ESGDFEV  YKWR+ +YP+GN      
Sbjct: 19  EIT-RSTRDLPPAHYTFKIENFSLLANAKIDNFESGDFEVGSYKWRLRLYPNGNKKNNGD 78

Query: 79  SHISLYLKLDSSETIPLGKKIYAKFILGVYNFSAKKYI 116
            HISLYL   +S  +P G ++   F L VYN    KY+
Sbjct: 79  GHISLYLAFSNSNALPFGWEVNVNFRLFVYNQIQDKYL 115

The following BLAST results are available for this feature:

BLAST of CsGy4G004070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453869.1	1.4e-46	58.60	PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Cucumis mel...	[more]
XP_008453868.1	4.6e-37	40.67	PREDICTED: uncharacterized protein LOC103494460 isoform X1 [Cucumis melo]	[more]
XP_011653084.1	2.1e-34	66.38	PREDICTED: probable inactive serine/threonine-protein kinase fnkC [Cucumis sativ...	[more]
XP_023529004.1	1.0e-20	51.30	speckle-type POZ protein-like A [Cucurbita pepo subsp. pepo]	[more]
XP_022941740.1	3.9e-20	49.57	speckle-type POZ protein-like A [Cucurbita moschata]	[more]

BLAST of CsGy4G004070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17380.1	1.9e-13	36.84	TRAF-like family protein	[more]
AT5G26260.1	1.2e-10	35.40	TRAF-like family protein	[more]
AT2G04170.1	1.5e-10	37.36	TRAF-like family protein	[more]
AT5G26290.1	3.4e-10	37.36	TRAF-like family protein	[more]
AT3G28220.1	9.9e-10	34.41	TRAF-like family protein	[more]

BLAST of CsGy4G004070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2J1\|MCC19_ARATH	1.7e-06	35.71	MATH domain and coiled-coil domain-containing protein At3g58250 OS=Arabidopsis t...	[more]
sp\|Q84WU2\|UBP13_ARATH	6.3e-06	32.95	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP1...	[more]
sp\|Q9FPT1\|UBP12_ARATH	1.1e-05	36.62	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP1...	[more]
sp\|Q9M2I9\|MCC21_ARATH	4.5e-04	40.00	MATH domain and coiled-coil domain-containing protein At3g58270 OS=Arabidopsis t...	[more]

BLAST of CsGy4G004070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWR3\|A0A1S3BWR3_CUCME	9.3e-47	58.60	ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1S3BYG6\|A0A1S3BYG6_CUCME	3.0e-37	40.67	uncharacterized protein LOC103494460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KUE1\|A0A0A0KUE1_CUCSA	1.4e-34	66.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G023030 PE=4 SV=1	[more]
tr\|A0A2C9VKS0\|A0A2C9VKS0_MANES	7.2e-15	46.59	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G073700 PE=4 SV=...	[more]
tr\|A9PEN0\|A9PEN0_POPTR	2.1e-14	44.90	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G103200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002083	MATH/TRAF_dom
IPR008974	TRAF-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G004070.1	CsGy4G004070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008974	TRAF-like	GENE3D	G3DSA:2.60.210.10		coord: 14..127 e-value: 1.5E-18 score: 69.0
IPR008974	TRAF-like	SUPERFAMILY	SSF49599	TRAF domain-like	coord: 30..118
IPR002083	MATH/TRAF domain	PFAM	PF00917	MATH	coord: 44..120 e-value: 7.7E-7 score: 29.2
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 30..184 score: 13.206
IPR002083	MATH/TRAF domain	CDD	cd00121	MATH	coord: 32..115 e-value: 1.16013E-14 score: 65.8634
None	No IPR available	PANTHER	PTHR26379:SF213	F16G16.5-RELATED	coord: 17..116
None	No IPR available	PANTHER	PTHR26379	FAMILY NOT NAMED	coord: 17..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G004070	Csa4G023030	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G004070	MELO3C017644	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G004070	ClCG07G017000	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G004070	CSPI04G04160	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G004070	CmaCh04G003620	Cucurbita maxima (Rimu)	cgybcmaB542
CsGy4G004070	CmoCh04G003800	Cucurbita moschata (Rifu)	cgybcmoB516
CsGy4G004070	Lsi07G001180	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G004070	Cp4.1LG01g03460	Cucurbita pepo (Zucchini)	cgybcpeB503
CsGy4G004070	MELO3C017644.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G004070	CsaV3_4G004220	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G004070	Cla97C07G144050	Watermelon (97103) v2	cgybwmbB298
CsGy4G004070	Bhi01G002004	Wax gourd	cgybwgoB361
CsGy4G004070	Carg08036	Silver-seed gourd	carcgybB0382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G004070	Watermelon (97103) v2	cgybwmbB255
CsGy4G004070	Cucumber (Gy14) v2	cgybcgybB126
CsGy4G004070	Cucurbita maxima (Rimu)	cgybcmaB493
CsGy4G004070	Cucurbita moschata (Rifu)	cgybcmoB464
CsGy4G004070	Cucurbita moschata (Rifu)	cgybcmoB497
CsGy4G004070	Cucurbita pepo (Zucchini)	cgybcpeB484
CsGy4G004070	Cucumber (Chinese Long) v2	cgybcuB181
CsGy4G004070	Bottle gourd (USVL1VR-Ls)	cgyblsiB230
CsGy4G004070	Watermelon (Charleston Gray)	cgybwcgB266
CsGy4G004070	Watermelon (97103) v1	cgybwmB290
CsGy4G004070	Wild cucumber (PI 183967)	cgybcpiB184
CsGy4G004070	Silver-seed gourd	carcgybB0708
CsGy4G004070	Silver-seed gourd	carcgybB0860
CsGy4G004070	Cucumber (Chinese Long) v3	cgybcucB184