CsGy4G003620 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003620
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Transmembrane protein, putative
Location	Chr4 : 2280737 .. 2281516 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACAACTCCACACTTGAGGTATATAATTCAACTGGACAAGGTAATTATGGTTAATATCAAAACGTTGAAGGTATGAATCTTTACTTTACATATGATGTTGCTACAACAATTTTGGGTCTACACTGTCGATTCTTAACTGGTGTTAATTATATATGTATCACAACGAATTACAAATTGTCATTTTTGTGGTTGTGCGTGTGCGGTCGCTGACAAATTCGTGTTAATGTGTACATCTACGGTATGATGTACTCATCTCTTCTTTGGCTTCGTTCACATGCAGGTGCAATGCAAGGTGATGATGCAAATAGACGTCGTCATGATCGAGACTTTTGGCATTCACGACAGGCGTTTTTAAAAAGCTATAACTTATCCAATGGATATAGAAGAGATGATGGATTGAAAGGCAAGATGAAGAGGACGATGAAAGAGCTCAATAGATCAACTAGTCGAATGGTTGGAGGCATTTGTGAAGACATGGCTAAAAGGAAGTTTGGAATTAGGGTTTATAGGCTCACGATAAGTCTCCCATCAATGGTTTTTATGACAGTGAGGTGTTTTTTGCCATCATTTAGGAACAAAGAGAATACACTACAAACATATAGTTACTAAATTCTCAATGTATGACTAAAATCTCACACACTAAAAAGATAAAAGTTCATGTGCTTTATTCTCTCTTGGCTTGATCTAAAAAAGAATTGATCTATATTGTAATTTAAACTTCGATAGAAATGTATTGTCGTTTTGTTTTTATAGGCAAATCACAAATGTTTGTTGGTCA

mRNA sequence

CATACAACTCCACACTTGAGGTATATAATTCAACTGGACAAGGTAATTATGGTTAATATCAAAACGTTGAAGGTGCAATGCAAGGTGATGATGCAAATAGACGTCGTCATGATCGAGACTTTTGGCATTCACGACAGGCGTTTTTAAAAAGCTATAACTTATCCAATGGATATAGAAGAGATGATGGATTGAAAGGCAAGATGAAGAGGACGATGAAAGAGCTCAATAGATCAACTAGTCGAATGGTTGGAGGCATTTGTGAAGACATGGCTAAAAGGAAGTTTGGAATTAGGGTTTATAGGCTCACGATAAGTCTCCCATCAATGGTTTTTATGACAGTGAGGTGTTTTTTGCCATCATTTAGGAACAAAGAGAATACACTACAAACATATAGTTACTAAATTCTCAATGTATGACTAAAATCTCACACACTAAAAAGATAAAAGTTCATGTGCTTTATTCTCTCTTGGCTTGATCTAAAAAAGAATTGATCTATATTGTAATTTAAACTTCGATAGAAATGTATTGTCGTTTTGTTTTTATAGGCAAATCACAAATGTTTGTTGGTCA

Coding sequence (CDS)

ATGCAAGGTGATGATGCAAATAGACGTCGTCATGATCGAGACTTTTGGCATTCACGACAGGCGTTTTTAAAAAGCTATAACTTATCCAATGGATATAGAAGAGATGATGGATTGAAAGGCAAGATGAAGAGGACGATGAAAGAGCTCAATAGATCAACTAGTCGAATGGTTGGAGGCATTTGTGAAGACATGGCTAAAAGGAAGTTTGGAATTAGGGTTTATAGGCTCACGATAAGTCTCCCATCAATGGTTTTTATGACAGTGAGGTGTTTTTTGCCATCATTTAGGAACAAAGAGAATACACTACAAACATATAGTTACTAA

Protein sequence

MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY

Homology

[Close]

BLAST of CsGy4G003620 vs. NCBI nr
Match: KGN53119.1 (hypothetical protein Csa_4G017070 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 3.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60
           MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 108
           CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 107

[Close]

BLAST of CsGy4G003620 vs. NCBI nr
Match: XP_023920324.1 (uncharacterized protein LOC112031845 [Quercus suber] >POF00409.1 hypothetical protein CFP56_78963 [Quercus suber])

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-14
Identity = 41/92 (44.57%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 9   RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 68
           RRHDRD+W++R+AFL SY+ S     ++G K K++ ++KELN   + +V  I   M+KRK
Sbjct: 43  RRHDRDYWYARRAFLNSYHFS----EENGFKYKLRGSVKELNEVATGVVTDIRRKMSKRK 102

Query: 69  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 101
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 103 LGIRVYRFTVALQSLVVLSIRCFTPWLNKRDS 130

[Close]

BLAST of CsGy4G003620 vs. NCBI nr
Match: POF05114.1 (hypothetical protein CFP56_05724 [Quercus suber])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 9   RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 68
           R HDRD+W++R+AFL SY+ S     ++G K K++ ++KELN   + +V  I   M+KRK
Sbjct: 28  RHHDRDYWYARRAFLNSYHFS----EENGFKYKLRGSVKELNEVATGVVTDIRRKMSKRK 87

Query: 69  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 101
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 88  IGIRVYRFTVALQSLVLLSIRCFTPWLNKRDS 115

[Close]

BLAST of CsGy4G003620 vs. NCBI nr
Match: KEH30342.1 (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 7.8e-13
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60
           +Q D  +     R+FW++R+AFL SY+L N  R +  LK K+KR +KE+N +  R+   +
Sbjct: 33  LQLDHGSWSLRGREFWYARRAFLNSYHL-NLERENVSLKEKLKRLVKEVNEAAMRVALDM 92

Query: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNK 99
              M KR+ GIR YR+T+SLPSM  +T+RCF+P F  K
Sbjct: 93  RRKMHKRRLGIRAYRVTMSLPSMFLVTMRCFMPWFNKK 129

[Close]

BLAST of CsGy4G003620 vs. NCBI nr
Match: OIW05712.1 (hypothetical protein TanjilG_23498 [Lupinus angustifolius])

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 39/100 (39.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60
           M+ D     R   +FW++R+AFL SY+LS     +   K K+K+++KE+N +   +V  I
Sbjct: 17  MELDHGGWSRRGHEFWYARRAFLNSYHLSMETNNNGSFKRKLKKSVKEINEAVIGVVLSI 76

Query: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 101
              M KRK G++ YR+T++LPS+V +T+RCF+P    ++N
Sbjct: 77  RRGMQKRKVGVKAYRVTMNLPSLVLVTMRCFMPWLYKRKN 116

[Close]

BLAST of CsGy4G003620 vs. TAIR10
Match: AT2G43390.1 (unknown protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.9e-05
Identity = 29/99 (29.29%), Postives = 47/99 (47.47%), Query Frame = 0


Query: 5   DANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDM 64
           D   R   + +   R+  L SY+L    R     K K++++MK +N S  R V  + +  
Sbjct: 18  DQRERYTQKCYRDGRRIVLASYDLMGSER--FSFKEKLRKSMKGMNESAERWVSEVRQGT 77

Query: 65  AKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQ 104
            KR+F IRV R  +   S    +V CF     +K+N ++
Sbjct: 78  TKRRFAIRVLRTKLGFYSCFIRSVGCFTSCVGHKDNFMK 114

[Close]

BLAST of CsGy4G003620 vs. TrEMBL
Match: tr|A0A0A0KW75|A0A0A0KW75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017070 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60
           MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 108
           CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 107

[Close]

BLAST of CsGy4G003620 vs. TrEMBL
Match: tr|A0A2P4L557|A0A2P4L557_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_78963 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 41/92 (44.57%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 9   RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 68
           RRHDRD+W++R+AFL SY+ S     ++G K K++ ++KELN   + +V  I   M+KRK
Sbjct: 43  RRHDRDYWYARRAFLNSYHFS----EENGFKYKLRGSVKELNEVATGVVTDIRRKMSKRK 102

Query: 69  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 101
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 103 LGIRVYRFTVALQSLVVLSIRCFTPWLNKRDS 130

[Close]

BLAST of CsGy4G003620 vs. TrEMBL
Match: tr|A0A2P4LIM0|A0A2P4LIM0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_05724 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-14
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 9   RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 68
           R HDRD+W++R+AFL SY+ S     ++G K K++ ++KELN   + +V  I   M+KRK
Sbjct: 28  RHHDRDYWYARRAFLNSYHFS----EENGFKYKLRGSVKELNEVATGVVTDIRRKMSKRK 87

Query: 69  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 101
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 88  IGIRVYRFTVALQSLVLLSIRCFTPWLNKRDS 115

[Close]

BLAST of CsGy4G003620 vs. TrEMBL
Match: tr|A0A072UKX4|A0A072UKX4_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25492673 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60
           +Q D  +     R+FW++R+AFL SY+L N  R +  LK K+KR +KE+N +  R+   +
Sbjct: 33  LQLDHGSWSLRGREFWYARRAFLNSYHL-NLERENVSLKEKLKRLVKEVNEAAMRVALDM 92

Query: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNK 99
              M KR+ GIR YR+T+SLPSM  +T+RCF+P F  K
Sbjct: 93  RRKMHKRRLGIRAYRVTMSLPSMFLVTMRCFMPWFNKK 129

[Close]

BLAST of CsGy4G003620 vs. TrEMBL
Match: tr|A0A2P5G0S8|A0A2P5G0S8_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_008240 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.7e-13
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 10  RHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRKF 69
           R   DFW+SR+AFL SY+ S+  R   G K ++++++KE+N +   +V  I + +A R+F
Sbjct: 39  RQGSDFWNSRRAFLSSYHFSDQQRA--GFKERLRKSVKEINGAAVAVVSDIRQQVASRRF 98

Query: 70  GIRVYRLTISLPSMVFMTVRCFLPSFRNKE 100
           GIRV+RLT++LPS+V ++VRCF P    K+
Sbjct: 99  GIRVFRLTMALPSLVHVSVRCFTPWLNKKD 126

The following BLAST results are available for this feature:

BLAST of CsGy4G003620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53119.1	3.1e-54	100.00	hypothetical protein Csa_4G017070 [Cucumis sativus]	[more]
XP_023920324.1	4.1e-14	44.57	uncharacterized protein LOC112031845 [Quercus suber] >POF00409.1 hypothetical pr...	[more]
POF05114.1	1.2e-13	43.48	hypothetical protein CFP56_05724 [Quercus suber]	[more]
KEH30342.1	7.8e-13	44.90	transmembrane protein, putative [Medicago truncatula]	[more]
OIW05712.1	1.0e-12	39.00	hypothetical protein TanjilG_23498 [Lupinus angustifolius]	[more]

BLAST of CsGy4G003620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43390.1	1.9e-05	29.29	unknown protein	[more]

BLAST of CsGy4G003620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G003620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW75\|A0A0A0KW75_CUCSA	2.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017070 PE=4 SV=1	[more]
tr\|A0A2P4L557\|A0A2P4L557_QUESU	2.7e-14	44.57	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_78963 PE=4 SV=1	[more]
tr\|A0A2P4LIM0\|A0A2P4LIM0_QUESU	7.9e-14	43.48	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_05724 PE=4 SV=1	[more]
tr\|A0A072UKX4\|A0A072UKX4_MEDTR	5.1e-13	44.90	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25492673 PE=4 ...	[more]
tr\|A0A2P5G0S8\|A0A2P5G0S8_9ROSA	6.7e-13	44.44	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_008240 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003620.1	CsGy4G003620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G003620	Csa4G017070	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003620	MELO3C017681	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003620	ClCG07G016620	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G003620	CSPI04G03730	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G003620	CmoCh06G016300	Cucurbita moschata (Rifu)	cgybcmoB535
CsGy4G003620	MELO3C017681.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003620	CsaV3_4G003740	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G003620	Cla97C07G143620	Watermelon (97103) v2	cgybwmbB298
CsGy4G003620	Bhi01G002052	Wax gourd	cgybwgoB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003620	Cucurbita maxima (Rimu)	cgybcmaB485
CsGy4G003620	Cucurbita maxima (Rimu)	cgybcmaB560
CsGy4G003620	Cucurbita moschata (Rifu)	cgybcmoB455
CsGy4G003620	Cucurbita pepo (Zucchini)	cgybcpeB552
CsGy4G003620	Cucurbita pepo (Zucchini)	cgybcpeB575
CsGy4G003620	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003620	Watermelon (97103) v1	cgybwmB290
CsGy4G003620	Silver-seed gourd	carcgybB0206
CsGy4G003620	Silver-seed gourd	carcgybB0693