CmoCh06G016300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G016300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr06 : 11363220 .. 11363758 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTGTGGTGTTATTCATATTCATTTACCGACAAGCTCATCTTGTCAGCCAACGTATACAGTGTTATAACCTTAATTACCTAGAAGATCAGAGGTTTGAATTTCTACGTCTACTTGTTATTGAGCTGAAACAACATATATGTTCTTAGTTTTGTTCTCATGCAGGTGCCATGCAAGGTTACGAAGTAAATAGGCGTCATGATCGGGATTTTTGGCGTTCACGACGAGATTTTTTAAAGGGCTACAACTTCACTAAGATAGATGATGGTTTAAAGGGAAAGATGAAGAGGTCGATGAAAGAGGTCAAGCGATCAGCTAGTGGAGTGGTCGGAGGAATTTGTGACGATATGACCAAAAGGAAGCTTGGAATTAGGGTTTATAGGCTCACAATTGGTTTGCCATCAATGGTTCTTGTGAGAATGAAATGTTTTGTGCCATCGTACAGGGAGAGAGAGTGTCTAAATTCTGTAAATCTCTATATATTGTCATTTTAATTTTAAATTTTTATCTTGTTATTTGTATTTAATATGTAACGC

mRNA sequence

ATGTGTGTGTGGTGTTATTCATATTCATTTACCGACAAGCTCATCTTGTCAGCCAACGTATACAGTGCCATGCAAGGTTACGAAGTAAATAGGCGTCATGATCGGGATTTTTGGCGTTCACGACGAGATTTTTTAAAGGGCTACAACTTCACTAAGATAGATGATGGTTTAAAGGGAAAGATGAAGAGGTCGATGAAAGAGGTCAAGCGATCAGCTAGTGGAGTGGTCGGAGGAATTTGTGACGATATGACCAAAAGGAAGCTTGGAATTAGGGTTTATAGGCTCACAATTGGTTTGCCATCAATGGTTCTTGTGAGAATGAAATGTTTTGTGCCATCGTACAGGGAGAGAGAGTGTCTAAATTCTGTAAATCTCTATATATTGTCATTTTAATTTTAAATTTTTATCTTGTTATTTGTATTTAATATGTAACGC

Coding sequence (CDS)

ATGTGTGTGTGGTGTTATTCATATTCATTTACCGACAAGCTCATCTTGTCAGCCAACGTATACAGTGCCATGCAAGGTTACGAAGTAAATAGGCGTCATGATCGGGATTTTTGGCGTTCACGACGAGATTTTTTAAAGGGCTACAACTTCACTAAGATAGATGATGGTTTAAAGGGAAAGATGAAGAGGTCGATGAAAGAGGTCAAGCGATCAGCTAGTGGAGTGGTCGGAGGAATTTGTGACGATATGACCAAAAGGAAGCTTGGAATTAGGGTTTATAGGCTCACAATTGGTTTGCCATCAATGGTTCTTGTGAGAATGAAATGTTTTGTGCCATCGTACAGGGAGAGAGAGTGTCTAAATTCTGTAAATCTCTATATATTGTCATTTTAA

Homology

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BLAST of CmoCh06G016300 vs. TrEMBL
Match: A0A0A0KW75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017070 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1


Query: 24  MQGYEVNRR-HDRDFWRSRRDFLKGYNFT---KIDDGLKGKMKRSMKEVKRSASGVVGGI 83
           MQG + NRR HDRDFW SR+ FLK YN +   + DDGLKGKMKR+MKE+ RS S +VGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 84  CDDMTKRKLGIRVYRLTIGLPSMVLVRMKCFVPSYRERECLNSVNLY 127
           C+DM KRK GIRVYRLTI LPSMV + ++CF+PS+R +E  N++  Y
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKE--NTLQTY 105

[Close]

BLAST of CmoCh06G016300 vs. TrEMBL
Match: A0A061EKB7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_020006 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 27  YEVNRRHDRDFWRSRRDFLKGYNFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKR 86
           Y    RH  D+W +RR FLK Y+F K  +GLK K+KRSMKE+  +A GV+   C +++KR
Sbjct: 34  YGSGNRHGPDYWHARRAFLKSYHF-KEQNGLKDKLKRSMKEINEAAVGVIANYCRELSKR 93

Query: 87  KLGIRVYRLTIGLPSMVL 105
           +LG+RV+R+ +G+PS+ L
Sbjct: 94  RLGLRVFRVRLGMPSLGL 110

[Close]

BLAST of CmoCh06G016300 vs. TrEMBL
Match: A0A067L9F4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20868 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 33  HDRDFWRSRRDFLKGYNFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKRKLGIRV 92
           H R++W++RR FL  Y+F +  +G+K K+K+ +KE+   A GV   +  ++++R+LGIRV
Sbjct: 41  HSRNYWQARRAFLSSYHFQE-KNGIKEKLKKRVKEINEVAIGVALNVRREISERRLGIRV 100

Query: 93  YRLTIGLPSMVLVRMKCFVPSYRERECLNS 123
           +R T  LPS VLV ++CF P   +RE + S
Sbjct: 101 FRFTFALPSFVLVSIRCFTPWVSKRELMCS 129

[Close]

BLAST of CmoCh06G016300 vs. TrEMBL
Match: A0A072UKX4_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g067330 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 35  RDFWRSRRDFLKGY--NFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKRKLGIRV 94
           R+FW +RR FL  Y  N  + +  LK K+KR +KEV  +A  V   +   M KR+LGIR 
Sbjct: 45  REFWYARRAFLNSYHLNLERENVSLKEKLKRLVKEVNEAAMRVALDMRRKMHKRRLGIRA 104

Query: 95  YRLTIGLPSMVLVRMKCFVPSYRER 118
           YR+T+ LPSM LV M+CF+P + ++
Sbjct: 105 YRVTMSLPSMFLVTMRCFMPWFNKK 129

[Close]

BLAST of CmoCh06G016300 vs. TrEMBL
Match: A0A0R0FVE5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G029500 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 32  RHDRDFWRSRRDFLKGYNFT---KIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKRKL 91
           R  R+F  +RR FL  Y+ +   K +   K K+K+S+KEV  +A GVV G+   ++KR++
Sbjct: 43  RRGREFCEARRAFLNSYHLSLERKNNVSFKEKLKKSVKEVNEAAMGVVLGMRRGVSKRRV 102

Query: 92  GIRVYRLTIGLPSMVLVRMKCFVP 113
           GI+V+R+ +   SMVLV ++CF+P
Sbjct: 103 GIKVFRVKMSSHSMVLVTLRCFIP 126

[Close]

BLAST of CmoCh06G016300 vs. NCBI nr
Match: gi|700197961|gb|KGN53119.1| (hypothetical protein Csa_4G017070 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1


Query: 24  MQGYEVNRR-HDRDFWRSRRDFLKGYNFT---KIDDGLKGKMKRSMKEVKRSASGVVGGI 83
           MQG + NRR HDRDFW SR+ FLK YN +   + DDGLKGKMKR+MKE+ RS S +VGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 84  CDDMTKRKLGIRVYRLTIGLPSMVLVRMKCFVPSYRERECLNSVNLY 127
           C+DM KRK GIRVYRLTI LPSMV + ++CF+PS+R +E  N++  Y
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKE--NTLQTY 105

[Close]

BLAST of CmoCh06G016300 vs. NCBI nr
Match: gi|590655175|ref|XP_007033911.1| (Uncharacterized protein TCM_020006 [Theobroma cacao])

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 27  YEVNRRHDRDFWRSRRDFLKGYNFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKR 86
           Y    RH  D+W +RR FLK Y+F K  +GLK K+KRSMKE+  +A GV+   C +++KR
Sbjct: 34  YGSGNRHGPDYWHARRAFLKSYHF-KEQNGLKDKLKRSMKEINEAAVGVIANYCRELSKR 93

Query: 87  KLGIRVYRLTIGLPSMVL 105
           +LG+RV+R+ +G+PS+ L
Sbjct: 94  RLGLRVFRVRLGMPSLGL 110

[Close]

BLAST of CmoCh06G016300 vs. NCBI nr
Match: gi|643737833|gb|KDP43858.1| (hypothetical protein JCGZ_20868 [Jatropha curcas])

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 33  HDRDFWRSRRDFLKGYNFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKRKLGIRV 92
           H R++W++RR FL  Y+F +  +G+K K+K+ +KE+   A GV   +  ++++R+LGIRV
Sbjct: 41  HSRNYWQARRAFLSSYHFQE-KNGIKEKLKKRVKEINEVAIGVALNVRREISERRLGIRV 100

Query: 93  YRLTIGLPSMVLVRMKCFVPSYRERECLNS 123
           +R T  LPS VLV ++CF P   +RE + S
Sbjct: 101 FRFTFALPSFVLVSIRCFTPWVSKRELMCS 129

[Close]

BLAST of CmoCh06G016300 vs. NCBI nr
Match: gi|922368293|ref|XP_013456311.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 35  RDFWRSRRDFLKGY--NFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKRKLGIRV 94
           R+FW +RR FL  Y  N  + +  LK K+KR +KEV  +A  V   +   M KR+LGIR 
Sbjct: 45  REFWYARRAFLNSYHLNLERENVSLKEKLKRLVKEVNEAAMRVALDMRRKMHKRRLGIRA 104

Query: 95  YRLTIGLPSMVLVRMKCFVPSYRER 118
           YR+T+ LPSM LV M+CF+P + ++
Sbjct: 105 YRVTMSLPSMFLVTMRCFMPWFNKK 129

[Close]

BLAST of CmoCh06G016300 vs. NCBI nr
Match: gi|1009167780|ref|XP_015902303.1| (PREDICTED: uncharacterized protein LOC107435254 [Ziziphus jujuba])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 35  RDFWRSRRDFLKGYNFTKIDDGLKGKMKRSMKEVKRSASGVVGGICDDMTKRKLGIRVYR 94
           RD W +RR FL+ Y+F+K   GLK K++ S+KE+   A  VV  I   ++ R+LGIR +R
Sbjct: 35  RDLWHARRAFLRSYHFSK-QSGLKEKLRMSVKELNGMAMVVVSDIRRHVSTRRLGIRAFR 94

Query: 95  LTIGLPSMVLVRMKCFVPSYRER 118
            T+ LPS+  + ++C+ P  +++
Sbjct: 95  FTMDLPSLFFISLRCYTPWIKKK 116

The following BLAST results are available for this feature:

BLAST of CmoCh06G016300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW75_CUCSA	1.3e-28	62.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017070 PE=4 SV=1	[more]
A0A061EKB7_THECC	3.4e-13	48.72	Uncharacterized protein OS=Theobroma cacao GN=TCM_020006 PE=4 SV=1	[more]
A0A067L9F4_JATCU	1.3e-12	42.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20868 PE=4 SV=1	[more]
A0A072UKX4_MEDTR	1.2e-10	45.88	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g067330 PE=4 SV=1	[more]
A0A0R0FVE5_SOYBN	2.5e-08	41.67	Uncharacterized protein OS=Glycine max GN=GLYMA_15G029500 PE=4 SV=1	[more]

BLAST of CmoCh06G016300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197961\|gb\|KGN53119.1\|	1.8e-28	62.62	hypothetical protein Csa_4G017070 [Cucumis sativus]	[more]
gi\|590655175\|ref\|XP_007033911.1\|	4.8e-13	48.72	Uncharacterized protein TCM_020006 [Theobroma cacao]	[more]
gi\|643737833\|gb\|KDP43858.1\|	1.8e-12	42.22	hypothetical protein JCGZ_20868 [Jatropha curcas]	[more]
gi\|922368293\|ref\|XP_013456311.1\|	1.7e-10	45.88	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|1009167780\|ref\|XP_015902303.1\|	3.3e-09	39.76	PREDICTED: uncharacterized protein LOC107435254 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016300.1	CmoCh06G016300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G016300	Cucsa.094470	Cucumber (Gy14) v1	cgycmoB0199
CmoCh06G016300	Csa4G017070	Cucumber (Chinese Long) v2	cmocuB823
CmoCh06G016300	MELO3C017681	Melon (DHL92) v3.5.1	cmomeB761
CmoCh06G016300	ClCG07G016620	Watermelon (Charleston Gray)	cmowcgB751
CmoCh06G016300	CSPI04G03730	Wild cucumber (PI 183967)	cmocpiB833
CmoCh06G016300	MELO3C017681.2	Melon (DHL92) v3.6.1	cmomedB865
CmoCh06G016300	CsaV3_4G003740	Cucumber (Chinese Long) v3	cmocucB0971
CmoCh06G016300	Cla97C07G143620	Watermelon (97103) v2	cmowmbB842
CmoCh06G016300	Bhi01G002052	Wax gourd	cmowgoB1009
CmoCh06G016300	CsGy4G003620	Cucumber (Gy14) v2	cgybcmoB535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G016300	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G016300	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G016300	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G016300	Watermelon (97103) v1	cmowmB789
CmoCh06G016300	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G016300	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G016300	Bottle gourd (USVL1VR-Ls)	cmolsiB768
CmoCh06G016300	Silver-seed gourd	carcmoB0274
CmoCh06G016300	Silver-seed gourd	carcmoB0947