ClCG07G016620 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G016620
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr07 : 33108528 .. 33108851 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGTGACAAAGTAAATAAGCGTCGTAACGATCGAGACTTCTGGCATGCACGACGAGCGTTTTTAAAAAGCTATAACTTCTCCAATGGATATGGAAGAGATGATGGGTTGAAAGGAAAGATGAAGAGGTCGATGAAAGAGCTCAATAGATCAACTAGTCGAATGGTTGGAGGCATTTGTGAAGAGATGGCTAAAAGGAAGATTGGAATTAGGGTTTATAAGCTCACAATAGGTCTGCCATCAATGGTTTTTATGACAGTGAGATGTTTTATGCCATCATTTAGGAACAAAGCTAGAGACTACACTACACAACTCATCTAG

mRNA sequence

ATGCAAAGTGACAAAGTAAATAAGCGTCGTAACGATCGAGACTTCTGGCATGCACGACGAGCGTTTTTAAAAAGCTATAACTTCTCCAATGGATATGGAAGAGATGATGGGTTGAAAGGAAAGATGAAGAGGTCGATGAAAGAGCTCAATAGATCAACTAGTCGAATGGTTGGAGGCATTTGTGAAGAGATGGCTAAAAGGAAGATTGGAATTAGGGTTTATAAGCTCACAATAGGTCTGCCATCAATGGTTTTTATGACAGTGAGATGTTTTATGCCATCATTTAGGAACAAAGCTAGAGACTACACTACACAACTCATCTAG

Coding sequence (CDS)

ATGCAAAGTGACAAAGTAAATAAGCGTCGTAACGATCGAGACTTCTGGCATGCACGACGAGCGTTTTTAAAAAGCTATAACTTCTCCAATGGATATGGAAGAGATGATGGGTTGAAAGGAAAGATGAAGAGGTCGATGAAAGAGCTCAATAGATCAACTAGTCGAATGGTTGGAGGCATTTGTGAAGAGATGGCTAAAAGGAAGATTGGAATTAGGGTTTATAAGCTCACAATAGGTCTGCCATCAATGGTTTTTATGACAGTGAGATGTTTTATGCCATCATTTAGGAACAAAGCTAGAGACTACACTACACAACTCATCTAG

Protein sequence

MQSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGICEEMAKRKIGIRVYKLTIGLPSMVFMTVRCFMPSFRNKARDYTTQLI

Homology

[Close]

BLAST of ClCG07G016620 vs. TrEMBL
Match: A0A0A0KW75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017070 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-42
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MQSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGI 60
           MQ D  N+RR+DRDFWH+R+AFLKSYN SNGY RDDGLKGKMKR+MKELNRSTSRMVGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 61  CEEMAKRKIGIRVYKLTIGLPSMVFMTVRCFMPSFRNKARDYTT 105
           CE+MAKRK GIRVY+LTI LPSMVFMTVRCF+PSFRNK     T
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQT 104

[Close]

BLAST of ClCG07G016620 vs. TrEMBL
Match: A0A072UKX4_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g067330 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1   MQSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGI 60
           +Q D  +     R+FW+ARRAFL SY+  N    +  LK K+KR +KE+N +  R+   +
Sbjct: 33  LQLDHGSWSLRGREFWYARRAFLNSYHL-NLERENVSLKEKLKRLVKEVNEAAMRVALDM 92

Query: 61  CEEMAKRKIGIRVYKLTIGLPSMVFMTVRCFMPSFRNK 99
             +M KR++GIR Y++T+ LPSM  +T+RCFMP F  K
Sbjct: 93  RRKMHKRRLGIRAYRVTMSLPSMFLVTMRCFMPWFNKK 129

[Close]

BLAST of ClCG07G016620 vs. TrEMBL
Match: A0A061EKB7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_020006 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 36/82 (43.90%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 2   QSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGIC 61
           + D  +  R+  D+WHARRAFLKSY+F       +GLK K+KRSMKE+N +   ++   C
Sbjct: 31  EDDYGSGNRHGPDYWHARRAFLKSYHFKE----QNGLKDKLKRSMKEINEAAVGVIANYC 90

Query: 62  EEMAKRKIGIRVYKLTIGLPSM 84
            E++KR++G+RV+++ +G+PS+
Sbjct: 91  RELSKRRLGLRVFRVRLGMPSL 108

[Close]

BLAST of ClCG07G016620 vs. TrEMBL
Match: A0A067L9F4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20868 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 11  NDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGICEEMAKRKIG 70
           + R++W ARRAFL SY+F       +G+K K+K+ +KE+N     +   +  E+++R++G
Sbjct: 41  HSRNYWQARRAFLSSYHFQE----KNGIKEKLKKRVKEINEVAIGVALNVRREISERRLG 100

Query: 71  IRVYKLTIGLPSMVFMTVRCFMP 94
           IRV++ T  LPS V +++RCF P
Sbjct: 101 IRVFRFTFALPSFVLVSIRCFTP 119

[Close]

BLAST of ClCG07G016620 vs. TrEMBL
Match: A0A067DMS8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043401mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1


Query: 2   QSDKVNKRRNDRDF-WHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGI 61
           Q D  +  RND  + WHARRAFL SY FS     ++    K K S+KELN +  RM   I
Sbjct: 30  QDDYASGNRNDLQYYWHARRAFLSSYQFSE----ENKCNKKFKGSLKELNEAAMRMFSDI 89

Query: 62  CEEMAKRKIGIRVYKLTIGLP-SMVFMTVRCFMP 94
            +E++KR++GIRV+K+   +P S   M+V C MP
Sbjct: 90  RQEVSKRRLGIRVFKVKFVVPSSAAVMSVGCLMP 119

[Close]

BLAST of ClCG07G016620 vs. NCBI nr
Match: gi|700197961|gb|KGN53119.1| (hypothetical protein Csa_4G017070 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 4.1e-42
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MQSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGI 60
           MQ D  N+RR+DRDFWH+R+AFLKSYN SNGY RDDGLKGKMKR+MKELNRSTSRMVGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 61  CEEMAKRKIGIRVYKLTIGLPSMVFMTVRCFMPSFRNKARDYTT 105
           CE+MAKRK GIRVY+LTI LPSMVFMTVRCF+PSFRNK     T
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQT 104

[Close]

BLAST of ClCG07G016620 vs. NCBI nr
Match: gi|922368293|ref|XP_013456311.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1   MQSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGI 60
           +Q D  +     R+FW+ARRAFL SY+  N    +  LK K+KR +KE+N +  R+   +
Sbjct: 33  LQLDHGSWSLRGREFWYARRAFLNSYHL-NLERENVSLKEKLKRLVKEVNEAAMRVALDM 92

Query: 61  CEEMAKRKIGIRVYKLTIGLPSMVFMTVRCFMPSFRNK 99
             +M KR++GIR Y++T+ LPSM  +T+RCFMP F  K
Sbjct: 93  RRKMHKRRLGIRAYRVTMSLPSMFLVTMRCFMPWFNKK 129

[Close]

BLAST of ClCG07G016620 vs. NCBI nr
Match: gi|590655175|ref|XP_007033911.1| (Uncharacterized protein TCM_020006 [Theobroma cacao])

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 36/82 (43.90%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 2   QSDKVNKRRNDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGIC 61
           + D  +  R+  D+WHARRAFLKSY+F       +GLK K+KRSMKE+N +   ++   C
Sbjct: 31  EDDYGSGNRHGPDYWHARRAFLKSYHFKE----QNGLKDKLKRSMKEINEAAVGVIANYC 90

Query: 62  EEMAKRKIGIRVYKLTIGLPSM 84
            E++KR++G+RV+++ +G+PS+
Sbjct: 91  RELSKRRLGLRVFRVRLGMPSL 108

[Close]

BLAST of ClCG07G016620 vs. NCBI nr
Match: gi|1009167780|ref|XP_015902303.1| (PREDICTED: uncharacterized protein LOC107435254 [Ziziphus jujuba])

HSP 1 Score: 81.6 bits (200), Expect = 8.9e-13
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 13  RDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGICEEMAKRKIGIR 72
           RD WHARRAFL+SY+FS    +  GLK K++ S+KELN     +V  I   ++ R++GIR
Sbjct: 35  RDLWHARRAFLRSYHFS----KQSGLKEKLRMSVKELNGMAMVVVSDIRRHVSTRRLGIR 94

Query: 73  VYKLTIGLPSMVFMTVRCFMPSFRNK 99
            ++ T+ LPS+ F+++RC+ P  + K
Sbjct: 95  AFRFTMDLPSLFFISLRCYTPWIKKK 116

[Close]

BLAST of ClCG07G016620 vs. NCBI nr
Match: gi|643737833|gb|KDP43858.1| (hypothetical protein JCGZ_20868 [Jatropha curcas])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 11  NDRDFWHARRAFLKSYNFSNGYGRDDGLKGKMKRSMKELNRSTSRMVGGICEEMAKRKIG 70
           + R++W ARRAFL SY+F       +G+K K+K+ +KE+N     +   +  E+++R++G
Sbjct: 41  HSRNYWQARRAFLSSYHFQE----KNGIKEKLKKRVKEINEVAIGVALNVRREISERRLG 100

Query: 71  IRVYKLTIGLPSMVFMTVRCFMP 94
           IRV++ T  LPS V +++RCF P
Sbjct: 101 IRVFRFTFALPSFVLVSIRCFTP 119

The following BLAST results are available for this feature:

BLAST of ClCG07G016620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW75_CUCSA	2.9e-42	80.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017070 PE=4 SV=1	[more]
A0A072UKX4_MEDTR	1.6e-13	43.88	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g067330 PE=4 SV=1	[more]
A0A061EKB7_THECC	2.1e-13	43.90	Uncharacterized protein OS=Theobroma cacao GN=TCM_020006 PE=4 SV=1	[more]
A0A067L9F4_JATCU	7.6e-11	39.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20868 PE=4 SV=1	[more]
A0A067DMS8_CITSI	7.6e-11	44.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043401mg PE=4 SV=1	[more]

BLAST of ClCG07G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197961\|gb\|KGN53119.1\|	4.1e-42	80.77	hypothetical protein Csa_4G017070 [Cucumis sativus]	[more]
gi\|922368293\|ref\|XP_013456311.1\|	2.3e-13	43.88	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|590655175\|ref\|XP_007033911.1\|	3.1e-13	43.90	Uncharacterized protein TCM_020006 [Theobroma cacao]	[more]
gi\|1009167780\|ref\|XP_015902303.1\|	8.9e-13	44.19	PREDICTED: uncharacterized protein LOC107435254 [Ziziphus jujuba]	[more]
gi\|643737833\|gb\|KDP43858.1\|	1.1e-10	39.76	hypothetical protein JCGZ_20868 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G016620.1	ClCG07G016620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G016620	Csa4G017070	Cucumber (Chinese Long) v2	cuwcgB319
ClCG07G016620	MELO3C017681	Melon (DHL92) v3.5.1	mewcgB493
ClCG07G016620	Cla97C07G143620	Watermelon (97103) v2	wcgwmbB307
ClCG07G016620	Bhi01G002052	Wax gourd	wcgwgoB580
ClCG07G016620	CSPI04G03730	Wild cucumber (PI 183967)	cpiwcgB336
ClCG07G016620	Cucsa.094470	Cucumber (Gy14) v1	cgywcgB119
ClCG07G016620	CmoCh06G016300	Cucurbita moschata (Rifu)	cmowcgB751
ClCG07G016620	CsGy4G003620	Cucumber (Gy14) v2	cgybwcgB297
ClCG07G016620	MELO3C017681.2	Melon (DHL92) v3.6.1	medwcgB488
ClCG07G016620	CsaV3_4G003740	Cucumber (Chinese Long) v3	cucwcgB336

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G016620	Silver-seed gourd	carwcgB0188
ClCG07G016620	Silver-seed gourd	carwcgB0671
ClCG07G016620	Cucurbita maxima (Rimu)	cmawcgB241
ClCG07G016620	Cucurbita maxima (Rimu)	cmawcgB748
ClCG07G016620	Cucurbita moschata (Rifu)	cmowcgB228
ClCG07G016620	Watermelon (97103) v1	wcgwmB372
ClCG07G016620	Cucurbita pepo (Zucchini)	cpewcgB567
ClCG07G016620	Cucurbita pepo (Zucchini)	cpewcgB793
ClCG07G016620	Bottle gourd (USVL1VR-Ls)	lsiwcgB407