CsGy3G039310 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G039310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	dynein light chain 2, cytoplasmic-like
Location	Chr3 : 37020799 .. 37021965 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGTTTTTGGATTTAGTGATGATTCTACGAAGATCCAATAGGGACCGCATGGAGAAGGATATATGGACGTGGGTGCAGTGAGGCTAGGAACACCAACCAAAGCTTATCCTAAAACTCTCTATATAACTAAACTTGTGTTCCCTTCAAGTCCTCCGCCCACAGCCACCGTAAGCTCCCGTCGTGTGTGGTGATATTAATATAATTTATTATTTTAGCCATGTTAGAAGGGAAAGCAATCGTGGGAGAAACGGATATGTTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGTACAACTTGATCTATTTTTAAAACAATTTCTCCATTACCCAATAATTTGTAATAAGATTGAACTAATATGTGCAATTTGTATGGTTATGTGTAAATTTGAGGGCCTAAATTTAATACTTGTATAAGTTTAAGGAACCGATCGATTTTTACTATTAAAAAATTGAGGTATAATTTAAGAGTAGTATTGAATATCTAAGTTATCATATTTTAATTAATAAATTTTTATATTAGTGTATGCATGAGAACTAAGGGTTGAATTATGAGATAAACATTTAATTTGTTATATGAAAGGAAATGGGTAATAGTAGCTATGATTGATGTGAAATTGTAATGAAAAAATGAGCAGGAATTTGACAGAATACATGGAGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAACAATTTCCTGAACCTACTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGACACACTTCTATTACACTTTTCTTCATTTCTCTCTTCTCTAGATCTTCTCTTCTTATATCAATGTCATATCCCCAAATTTAAATCTTTATCATTAATTCCCGCTATATCTGTATCTAAGTGCTTTTCTTTTTCTTAATCATTCTTCCTCAATCCTCTCGCCCATTAATTTTATCTTGTTCATTTTTGTGTGGCTTTTTTTGTTGTGTCTTACTATGAAAAAATAAAATTATTTAGTTAAAATCATTTTTTC

mRNA sequence

TTGGGTTTTTGGATTTAGTGATGATTCTACGAAGATCCAATAGGGACCGCATGGAGAAGGATATATGGACGTGGGTGCAGTGAGGCTAGGAACACCAACCAAAGCTTATCCTAAAACTCTCTATATAACTAAACTTGTGTTCCCTTCAAGTCCTCCGCCCACAGCCACCGTAAGCTCCCGTCGTGTGTGGTGATATTAATATAATTTATTATTTTAGCCATGTTAGAAGGGAAAGCAATCGTGGGAGAAACGGATATGTTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGAATACATGGAGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAACAATTTCCTGAACCTACTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGACACACTTCTATTACACTTTTCTTCATTTCTCTCTTCTCTAGATCTTCTCTTCTTATATCAATGTCATATCCCCAAATTTAAATCTTTATCATTAATTCCCGCTATATCTGTATCTAAGTGCTTTTCTTTTTCTTAATCATTCTTCCTCAATCCTCTCGCCCATTAATTTTATCTTGTTCATTTTTGTGTGGCTTTTTTTGTTGTGTCTTACTATGAAAAAATAAAATTATTTAGTTAAAATCATTTTTTC

Coding sequence (CDS)

ATGTTAGAAGGGAAAGCAATCGTGGGAGAAACGGATATGTTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGAATACATGGAGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAACAATTTCCTGAACCTACTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGA

Protein sequence

MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP

Homology

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_004146843.1 (PREDICTED: dynein light chain 2, cytoplasmic [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 117
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_008454627.1 (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 7.0e-52
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 117
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: KGN59871.1 (hypothetical protein Csa_3G851720 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 20  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 79
           DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC
Sbjct: 36  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 95

Query: 80  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 117
           VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP
Sbjct: 96  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 132

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTH 106
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ    P PTH
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---PHPTH 102

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_022981659.1 (dynein light chain 2, cytoplasmic-like [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTH 106
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ    P PTH
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---PHPTH 102

[Close]

BLAST of CsGy3G039310 vs. TAIR10
Match: AT4G27360.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-35
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          MLEGKA++G+TDM + M++DAL+LA+KALD FDVTE T IARFIKKEFDR +G GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT FGSFVTHC GCFI+F VGSL ILLF+GS
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of CsGy3G039310 vs. TAIR10
Match: AT3G16120.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of CsGy3G039310 vs. TAIR10
Match: AT4G15930.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-15
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDF 64
           +A++   DM + MQ++A+ +A  A + + V +  DIA  IKKEFD+ HG  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of CsGy3G039310 vs. TAIR10
Match: AT5G20110.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.2e-14
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ +G  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFR 90
            GCFIYF +  L +LLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of CsGy3G039310 vs. TAIR10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCI 60
          MLEGKA+V ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  +G GWQC+
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of CsGy3G039310 vs. Swiss-Prot
Match: sp|O02414|DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.6e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M E KA++   DM E MQQDA++ A +AL+ F++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of CsGy3G039310 vs. Swiss-Prot
Match: sp|O96860|DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.6e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M + KA++   DM E MQQDA++ A +AL+ +++ +  DIA FIKKEFD+ +   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CsGy3G039310 vs. Swiss-Prot
Match: sp|Q22799|DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M++ KA++   DM + MQQDA++ A +AL+ +++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CsGy3G039310 vs. Swiss-Prot
Match: sp|Q39580|DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 5  KAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDF 64
          KA++   DM E MQ DA++ A +AL+ +++ +  DIA +IKKEFDR H   W CIVG +F
Sbjct: 7  KAVIKNADMSEEMQADAVDCATQALEKYNIEK--DIAAYIKKEFDRKHNPTWHCIVGRNF 66

Query: 65 GSFVTHCFGCFIYFCVGSLAILLFR 90
          GS+VTH    FIYF +G +AILLF+
Sbjct: 67 GSYVTHETKHFIYFYLGQVAILLFK 89

[Close]

BLAST of CsGy3G039310 vs. Swiss-Prot
Match: sp|Q24117|DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M + KA++   DM E MQQDA++ A +AL+ +++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CsGy3G039310 vs. TrEMBL
Match: tr|A0A1S3BZU7|A0A1S3BZU7_CUCME (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.7e-52
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 117
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of CsGy3G039310 vs. TrEMBL
Match: tr|A0A0A0LIK5|A0A0A0LIK5_CUCSA (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G851720 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 20  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 79
           DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC
Sbjct: 36  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 95

Query: 80  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 117
           VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP
Sbjct: 96  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 132

[Close]

BLAST of CsGy3G039310 vs. TrEMBL
Match: tr|A0A2P5C4C0|A0A2P5C4C0_PARAD (Dynein light chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185460 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKA++GETDML+ MQQDAL+LAAKALD FDVTEAT+IARFIKKEFDRIHG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDVTEATEIARFIKKEFDRIHGAGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMD 112
           GTDFGSFVTHC GCFIYFCVGSLAILLFRGSA S  +       +HF+ ++
Sbjct: 61  GTDFGSFVTHCSGCFIYFCVGSLAILLFRGSAGSDAE------ANHFATLE 105

[Close]

BLAST of CsGy3G039310 vs. TrEMBL
Match: tr|A0A2P5F3L6|A0A2P5F3L6_9ROSA (Dynein light chain OS=Trema orientalis OX=63057 GN=TorRG33x02_117240 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-41
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          MLEGKA++GETDML+ MQQDAL+LAAKALD FDVTEAT+IARFIKKEFDRIHG GWQCIV
Sbjct: 1  MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDVTEATEIARFIKKEFDRIHGAGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQ 98
          GTDFGSFVTHC GCFIYFCVGSLAILLFRGSA S  +
Sbjct: 61 GTDFGSFVTHCSGCFIYFCVGSLAILLFRGSAGSDAE 97

[Close]

BLAST of CsGy3G039310 vs. TrEMBL
Match: tr|A0A1U8KJC2|A0A1U8KJC2_GOSHI (Dynein light chain OS=Gossypium hirsutum OX=3635 GN=LOC107917770 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-41
Identity = 89/115 (77.39%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKA+VGETDML+ MQQ AL++AAKALD FDVTEAT+IARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAVVGETDMLQTMQQVALDVAAKALDFFDVTEATEIARFIKKEFDRAYGSGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLK 116
           GTDFGSFVTHC GCFIYFC+GSLAILLFRGSAA++     P+P HHFS ++ TLK
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSLAILLFRGSAATE-----PDP-HHFSALE-TLK 108

The following BLAST results are available for this feature:

BLAST of CsGy3G039310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146843.1	5.4e-60	100.00	PREDICTED: dynein light chain 2, cytoplasmic [Cucumis sativus]	[more]
XP_008454627.1	7.0e-52	89.74	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo]	[more]
KGN59871.1	1.9e-49	100.00	hypothetical protein Csa_3G851720 [Cucumis sativus]	[more]
XP_022941140.1	6.4e-45	89.52	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]
XP_022981659.1	6.4e-45	89.52	dynein light chain 2, cytoplasmic-like [Cucurbita maxima]	[more]

BLAST of CsGy3G039310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27360.1	1.1e-35	75.82	Dynein light chain type 1 family protein	[more]
AT3G16120.1	3.8e-23	56.04	Dynein light chain type 1 family protein	[more]
AT4G15930.1	2.9e-15	44.71	Dynein light chain type 1 family protein	[more]
AT5G20110.1	3.2e-14	48.72	Dynein light chain type 1 family protein	[more]
AT1G52240.1	1.1e-11	54.24	RHO guanyl-nucleotide exchange factor 11	[more]

BLAST of CsGy3G039310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O02414\|DYL1_HELCR	6.6e-17	50.56	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
sp\|O96860\|DYL2_DROME	6.6e-17	50.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
sp\|Q22799\|DYL1_CAEEL	1.5e-16	48.31	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
sp\|Q39580\|DYL1_CHLRE	1.5e-16	51.76	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
sp\|Q24117\|DYL1_DROME	1.5e-16	49.44	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]

BLAST of CsGy3G039310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZU7\|A0A1S3BZU7_CUCME	4.7e-52	89.74	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1	[more]
tr\|A0A0A0LIK5\|A0A0A0LIK5_CUCSA	1.3e-49	100.00	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G851720 PE=3 SV=1	[more]
tr\|A0A2P5C4C0\|A0A2P5C4C0_PARAD	2.2e-41	77.48	Dynein light chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_185460 PE=3 SV...	[more]
tr\|A0A2P5F3L6\|A0A2P5F3L6_9ROSA	4.8e-41	86.60	Dynein light chain OS=Trema orientalis OX=63057 GN=TorRG33x02_117240 PE=3 SV=1	[more]
tr\|A0A1U8KJC2\|A0A1U8KJC2_GOSHI	6.3e-41	77.39	Dynein light chain OS=Gossypium hirsutum OX=3635 GN=LOC107917770 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

Vocabulary: **INTERPRO**
Term	Definition
IPR037177	DLC_sf
IPR001372	Dynein_light_chain_typ-1/2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G039310.1	CsGy3G039310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.9E-44 score: 163.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 3.0E-31 score: 107.5
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..93
IPR037177	Dynein light chain superfamily	GENE3D	G3DSA:3.30.740.10		coord: 1..90 e-value: 3.0E-31 score: 109.3
IPR037177	Dynein light chain superfamily	SUPERFAMILY	SSF54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF22	DYNEIN LIGHT CHAIN TYPE 1 FAMILY PROTEIN	coord: 1..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G039310	Csa3G851720	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G039310	MELO3C018185	Melon (DHL92) v3.5.1	cgybmeB185
CsGy3G039310	ClCG11G018540	Watermelon (Charleston Gray)	cgybwcgB186
CsGy3G039310	CSPI03G41900	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G039310	CmaCh09G008970	Cucurbita maxima (Rimu)	cgybcmaB288
CsGy3G039310	CmaCh01G011810	Cucurbita maxima (Rimu)	cgybcmaB363
CsGy3G039310	CmoCh09G008870	Cucurbita moschata (Rifu)	cgybcmoB261
CsGy3G039310	CmoCh01G012350	Cucurbita moschata (Rifu)	cgybcmoB334
CsGy3G039310	Lsi04G012780	Bottle gourd (USVL1VR-Ls)	cgyblsiB177
CsGy3G039310	Cp4.1LG06g07190	Cucurbita pepo (Zucchini)	cgybcpeB439
CsGy3G039310	Cp4.1LG03g13940	Cucurbita pepo (Zucchini)	cgybcpeB399
CsGy3G039310	MELO3C018185.2	Melon (DHL92) v3.6.1	cgybmedB186
CsGy3G039310	CsaV3_3G044330	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G039310	Cla97C11G224650	Watermelon (97103) v2	cgybwmbB185
CsGy3G039310	Bhi09G001680	Wax gourd	cgybwgoB330
CsGy3G039310	Carg06477	Silver-seed gourd	carcgybB0124

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G039310	Cucurbita pepo (Zucchini)	cgybcpeB392
CsGy3G039310	Watermelon (97103) v1	cgybwmB256
CsGy3G039310	Silver-seed gourd	carcgybB0892
CsGy3G039310	Silver-seed gourd	carcgybB1000
CsGy3G039310	Watermelon (97103) v2	cgybwmbB194
CsGy3G039310	Wax gourd	cgybwgoB323