MELO3C018185 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018185
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Dynein light chain family protein
Location	chr4 : 8790823 .. 8792313 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAATCAAAGTTTATCCCAAAACTCTATATAACTAAACTAGTGTTCCCTTCAAGTCCTCCGCCCACAGCCACCACCGTAAGCTCCCTCGTGTGTGAGTGATATAATATTGATTATTTTAGCCATGTTAGAAGGGAAAGCAATCATCGGAGAAACGGATATGCTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCATCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGTACAACTTCTCTTTCTAAATAATTAGTCCAATACATACATTATCTTGTAAGAGAAATTGAACTCAACTCATACTTGCAATTTTTACGGTACGTAAATTTGAAGTATAATTACAAATATCGTCATACTTAGAGTGGTTTTTACAATTTGTTCCATTTTGGCTTTCCCACTTTTAAACATCTAATTTTTATCTTCGTATTTTAATTAATAATTTTTTATATTAGTCTTTTAAGTTAATTTATGCAATTGTTGAATTATCAGATAAACATTACTGTTTTTGGTGTATGTGCGACAGCATCCAAGTATTGTGCTTTTCTTTATATAAATTTTGAATATACTTACACAACAACTTTTGTTTTATGAAAAATTATTATTAATGCTTTGGATTAAAAATTAATTAAAATTGAACCATAAAAAAATAGAAATGAAAAATTATATCATAATTTCTTTTTTTTTTCTTTTGAGCTTATGAGAAAAGAAAAAGAAATTAAAAAGAACTTATAACTATAAATAAGTAAATCGGTAGACGTAGTTGAATTGACATGAAATTTGTAGAATTATATTGTGTGGTTAATAAAAGATTGATCGTTTTAGGGTTATTTAAAAATGATGGATATAAGATAAGAATTTAATAAATTTTGAAAATATTTTCGAGAATGAAAGGAAAGTGGTCAATATTTGTTGATGATTTACATTGGAAAAAATGAGCAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACACTGTTTTGGATGCTTCATTTACTTTTGTGTTGGAAGTCTTGCAGTTTTGCTCTTTAGAGGTTCTGCTGCCTCTCAAGAACAACAATTAGTACCTGACCCATCAACTCATCACTTTTCTCTTATCGACACTCTCAAACCATGATTACTATATTACACTTTTCTTTCTTGATTTCTGATCTCTTCTCTTATATCATCATCTCATATCCCCAAATTTTTATCTTATAATTAGTATGTGCTATATGTATCAAAGTGCTTTTTTAAATGCTTAAATCACTTTTAATTTTCTTCTCAATATCCACTCCCCCGTTAATTTTATCTTGTTTTTTAATTTAGGGTTGCTAATAATTTTGAAATTTTCACATATATTCCCACAATAAATTGAAAAGTTACAACTTGTTTACAAGTGTTTAAGATAACACGGCCAATGGAAACACAGAAAATTTCCTCCT

mRNA sequence

ACCAATCAAAGTTTATCCCAAAACTCTATATAACTAAACTAGTGTTCCCTTCAAGTCCTCCGCCCACAGCCACCACCGTAAGCTCCCTCGTGTGTGAGTGATATAATATTGATTATTTTAGCCATGTTAGAAGGGAAAGCAATCATCGGAGAAACGGATATGCTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCATCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACACTGTTTTGGATGCTTCATTTACTTTTGTGTTGGAAGTCTTGCAGTTTTGCTCTTTAGAGGTTCTGCTGCCTCTCAAGAACAACAATTAGTACCTGACCCATCAACTCATCACTTTTCTCTTATCGACACTCTCAAACCATGATTACTATATTACACTTTTCTTTCTTGATTTCTGATCTCTTCTCTTATATCATCATCTCATATCCCCAAATTTTTATCTTATAATTAGTATGTGCTATATGTATCAAAGTGCTTTTTTAAATGCTTAAATCACTTTTAATTTTCTTCTCAATATCCACTCCCCCGTTAATTTTATCTTGTTTTTTAATTTAGGGTTGCTAATAATTTTGAAATTTTCACATATATTCCCACAATAAATTGAAAAGTTACAACTTGTTTACAAGTGTTTAAGATAACACGGCCAATGGAAACACAGAAAATTTCCTCCT

Coding sequence (CDS)

ATGTTAGAAGGGAAAGCAATCATCGGAGAAACGGATATGCTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCATCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACACTGTTTTGGATGCTTCATTTACTTTTGTGTTGGAAGTCTTGCAGTTTTGCTCTTTAGAGGTTCTGCTGCCTCTCAAGAACAACAATTAGTACCTGACCCATCAACTCATCACTTTTCTCTTATCGACACTCTCAAACCATGA

Protein sequence

MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP*

Homology

[Close]

BLAST of MELO3C018185 vs. Swiss-Prot
Match: DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-19
Identity = 48/89 (53.93%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M E KA+I   DM E MQQDA++ A++AL+ F++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +AVLLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of MELO3C018185 vs. Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M + KA+I   DM E MQQDA++ A++AL+ +++ +  DIA FIKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of MELO3C018185 vs. Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M++ KA+I   DM + MQQDA++ A++AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of MELO3C018185 vs. Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M + KA+I   DM E MQQDA++ A++AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of MELO3C018185 vs. Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-18
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M + KA+I   DM E MQQDA++ A++A++ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of MELO3C018185 vs. TrEMBL
Match: A0A0D2M811_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G076700 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-43
Identity = 88/115 (76.52%), Postives = 101/115 (87.83%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKA++GETDML+ MQQ AL++A+KALD FDVTEAT+IARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAVVGETDMLQTMQQVALDVAAKALDFFDVTEATEIARFIKKEFDRAYGSGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLK 116
           GTDFGSFVTHC GCFIYFC+GSLA+LLFRGSAA++     PDP  HHFS ++TLK
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSLAILLFRGSAATE-----PDP--HHFSALETLK 108

[Close]

BLAST of MELO3C018185 vs. TrEMBL
Match: A0A0A0LIK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851720 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.1e-42
Identity = 87/98 (88.78%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 20  DALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFC 79
           DALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIVGTDFGSFVTHCFGCFIYFC
Sbjct: 36  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 95

Query: 80  VGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 117
           VGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 96  VGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 132

[Close]

BLAST of MELO3C018185 vs. TrEMBL
Match: A0A059BVC4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03359 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-41
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKA+IGETDML+AMQQ+AL+LASKALDSFDVTE TDIARFIK EFDR YGGGWQCIV
Sbjct: 93  MLEGKAVIGETDMLQAMQQEALHLASKALDSFDVTEPTDIARFIKNEFDRIYGGGWQCIV 152

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQ 98
           GTDFGSFVTHC GCFIYFCVGSLA+LLFRGS+  + +
Sbjct: 153 GTDFGSFVTHCSGCFIYFCVGSLAILLFRGSSGPEAE 189

[Close]

BLAST of MELO3C018185 vs. TrEMBL
Match: K7LWB5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G218900 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.9e-41
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          MLEGKA+IGETDML+ MQQDALNLASKALD FDVTEATDIARFIKKEFDRT+G GWQCIV
Sbjct: 1  MLEGKAVIGETDMLQTMQQDALNLASKALDFFDVTEATDIARFIKKEFDRTHGPGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGS 92
          GTDFGSFVTHC GCFIYFC+GSLA+LLFRGS
Sbjct: 61 GTDFGSFVTHCCGCFIYFCIGSLAILLFRGS 91

[Close]

BLAST of MELO3C018185 vs. TrEMBL
Match: A0A0D2QXN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G430500 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.7e-41
Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKA+IG+TDML+ MQQDAL+LA+KALD FDVTEATDIARF+KKEFD+TYG GWQCIV
Sbjct: 1   MLEGKAVIGDTDMLQTMQQDALHLAAKALDFFDVTEATDIARFVKKEFDKTYGEGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLK 116
           GTDFGSFVTHC GCFIYFC+GSLA LLF+GSA       VP    + F+ ++T+K
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSLAFLLFKGSA-------VPQSHPNQFNALETVK 108

[Close]

BLAST of MELO3C018185 vs. TAIR10
Match: AT4G27360.1 (AT4G27360.1 Dynein light chain type 1 family protein)

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-37
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          MLEGKA++G+TDM + M++DAL+LASKALD FDVTE T IARFIKKEFDR+YG GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGS 92
          GT FGSFVTHC GCFI+F VGSL +LLF+GS
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of MELO3C018185 vs. TAIR10
Match: AT3G16120.1 (AT3G16120.1 Dynein light chain type 1 family protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          MLEGKA + ETDM   MQ  A+ +AS++LD FDV ++  IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of MELO3C018185 vs. TAIR10
Match: AT5G20110.1 (AT5G20110.1 Dynein light chain type 1 family protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-16
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 12  DMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ YG  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAVLLFR 90
            GCFIYF +  L VLLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of MELO3C018185 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 5   KAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDF 64
           +A+I   DM + MQ++A+ +A  A + + V +  DIA  IKKEFD+ +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAVLLFR 90
           GS+VTH    F+YF +   AVLLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of MELO3C018185 vs. TAIR10
Match: AT1G52240.1 (AT1G52240.1 RHO guanyl-nucleotide exchange factor 11)

HSP 1 Score: 70.5 bits (171), Expect = 7.9e-13
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCI 60
          MLEGKA++ ++DM   MQ  A+  AS+ALD FDV +   IA  IKKEFD  YG GWQC+
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of MELO3C018185 vs. NCBI nr
Match: gi|659109266|ref|XP_008454627.1| (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 3.6e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 117
           GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of MELO3C018185 vs. NCBI nr
Match: gi|449458215|ref|XP_004146843.1| (PREDICTED: dynein light chain 2, cytoplasmic [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 117
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 116

[Close]

BLAST of MELO3C018185 vs. NCBI nr
Match: gi|823131673|ref|XP_012459000.1| (PREDICTED: dynein light chain 2, cytoplasmic [Gossypium raimondii])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 88/115 (76.52%), Postives = 101/115 (87.83%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKA++GETDML+ MQQ AL++A+KALD FDVTEAT+IARFIKKEFDR YG GWQCIV
Sbjct: 60  MLEGKAVVGETDMLQTMQQVALDVAAKALDFFDVTEATEIARFIKKEFDRAYGSGWQCIV 119

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLK 116
           GTDFGSFVTHC GCFIYFC+GSLA+LLFRGSAA++     PDP  HHFS ++TLK
Sbjct: 120 GTDFGSFVTHCSGCFIYFCIGSLAILLFRGSAATE-----PDP--HHFSALETLK 167

[Close]

BLAST of MELO3C018185 vs. NCBI nr
Match: gi|763746028|gb|KJB13467.1| (hypothetical protein B456_002G076700 [Gossypium raimondii])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 88/115 (76.52%), Postives = 101/115 (87.83%), Query Frame = 1


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKA++GETDML+ MQQ AL++A+KALD FDVTEAT+IARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAVVGETDMLQTMQQVALDVAAKALDFFDVTEATEIARFIKKEFDRAYGSGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLK 116
           GTDFGSFVTHC GCFIYFC+GSLA+LLFRGSAA++     PDP  HHFS ++TLK
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSLAILLFRGSAATE-----PDP--HHFSALETLK 108

[Close]

BLAST of MELO3C018185 vs. NCBI nr
Match: gi|700204738|gb|KGN59871.1| (hypothetical protein Csa_3G851720 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-42
Identity = 87/98 (88.78%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 20  DALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFC 79
           DALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIVGTDFGSFVTHCFGCFIYFC
Sbjct: 36  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 95

Query: 80  VGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 117
           VGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 96  VGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 132

The following BLAST results are available for this feature:

BLAST of MELO3C018185 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DYL1_HELCR	9.1e-19	53.93	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=...	[more]
DYL2_DROME	1.5e-18	51.69	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1	[more]
DYL1_CAEEL	3.4e-18	49.44	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1	[more]
DYL1_DROME	3.4e-18	50.56	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1	[more]
DYL2_RAT	7.7e-18	49.44	Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1	[more]

BLAST of MELO3C018185 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2M811_GOSRA	1.7e-43	76.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G076700 PE=4 SV=1	[more]
A0A0A0LIK5_CUCSA	3.1e-42	88.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851720 PE=4 SV=1	[more]
A0A059BVC4_EUCGR	3.4e-41	84.54	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03359 PE=4 SV=1	[more]
K7LWB5_SOYBN	5.9e-41	90.11	Uncharacterized protein OS=Glycine max GN=GLYMA_12G218900 PE=4 SV=1	[more]
A0A0D2QXN0_GOSRA	7.7e-41	72.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G430500 PE=4 SV=1	[more]

BLAST of MELO3C018185 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27360.1	2.1e-37	76.92	Dynein light chain type 1 family protein	[more]
AT3G16120.1	1.2e-24	57.14	Dynein light chain type 1 family protein	[more]
AT5G20110.1	7.6e-16	51.28	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.3e-15	45.88	Dynein light chain type 1 family protein	[more]
AT1G52240.1	7.9e-13	55.93	RHO guanyl-nucleotide exchange factor 11	[more]

BLAST of MELO3C018185 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109266\|ref\|XP_008454627.1\|	3.6e-60	100.00	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo]	[more]
gi\|449458215\|ref\|XP_004146843.1\|	1.3e-52	89.74	PREDICTED: dynein light chain 2, cytoplasmic [Cucumis sativus]	[more]
gi\|823131673\|ref\|XP_012459000.1\|	2.4e-43	76.52	PREDICTED: dynein light chain 2, cytoplasmic [Gossypium raimondii]	[more]
gi\|763746028\|gb\|KJB13467.1\|	2.4e-43	76.52	hypothetical protein B456_002G076700 [Gossypium raimondii]	[more]
gi\|700204738\|gb\|KGN59871.1\|	4.5e-42	88.78	hypothetical protein Csa_3G851720 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001372	Dynein_light_chain_typ-1/2

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0031514	motile cilium
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0044464	cell part
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54224	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018185T1	MELO3C018185T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54224	MU54224	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	GENE3D	G3DSA:3.30.740.10		coord: 1..89 score: 4.2
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..100 score: 2.7
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 score: 6.5
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 score: 7.8
None	No IPR available	PANTHER	PTHR11886:SF22	DYNEIN LIGHT CHAIN TYPE 1 FAMILY PROTEIN	coord: 1..100 score: 2.7
None	No IPR available	unknown	SSF54648	DLC	coord: 1..90 score: 6.15

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018185	Csa3G851720	Cucumber (Chinese Long) v2	cumeB222
MELO3C018185	Cla023429	Watermelon (97103) v1	mewmB384
MELO3C018185	ClCG11G018540	Watermelon (Charleston Gray)	mewcgB320
MELO3C018185	Cla97C11G224650	Watermelon (97103) v2	mewmbB321
MELO3C018185	Bhi09G001680	Wax gourd	mewgoB436
MELO3C018185	CSPI03G41900	Wild cucumber (PI 183967)	cpimeB215
MELO3C018185	Cucsa.341570	Cucumber (Gy14) v1	cgymeB559
MELO3C018185	CmaCh09G008970	Cucurbita maxima (Rimu)	cmameB033
MELO3C018185	CmaCh01G011810	Cucurbita maxima (Rimu)	cmameB428
MELO3C018185	CmoCh09G008870	Cucurbita moschata (Rifu)	cmomeB022
MELO3C018185	CmoCh01G012350	Cucurbita moschata (Rifu)	cmomeB418
MELO3C018185	Lsi04G012780	Bottle gourd (USVL1VR-Ls)	lsimeB312
MELO3C018185	Cp4.1LG06g07190	Cucurbita pepo (Zucchini)	cpemeB727
MELO3C018185	CsGy3G039310	Cucumber (Gy14) v2	cgybmeB185
MELO3C018185	CsaV3_3G044330	Cucumber (Chinese Long) v3	cucmeB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018185	Cucurbita pepo (Zucchini)	cpemeB519
MELO3C018185	Silver-seed gourd	carmeB0891
MELO3C018185	Silver-seed gourd	carmeB0990