CsGy3G024550 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G024550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr3 : 24635108 .. 24636385 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCATGTCTCTCATATACCCATGACGTTTTTCCGAGCAAGAATATTCCCCTGACCCCAAGAGGGAACATACGAGCGAAGAAGGCTCTCTTCTTACTTCAAAACTGCAAGAATTTCAAACACCTCAGGCAAATCCATGCCAAAATCATTCGTAGTGGCCTTTCTAACGATCAATTACTTACTAGGAAACTGATTCATCTCTACTCTACTCATGGAAGAATAGCGTATGCGATTCTTCTATTCTATCAAATCCAAAACCCTTGTACGTTTACTTGGAATCTGATAATCAGGGCCAACACTATCAATGGTCTCTCTGAACAAGCTCTCATGTTGTATAAGAACATGGTATGCCAAGGAATTGCAGCCGATAAGTTTACATTTCCATTTGTCATCAAAGCTTGTACAAATTTCTTATCCATTGACCTAGGAAAAGTAGTTCATGGGTCTTTAATCAAATACGGGTTTTCAGGGGACGTATTTGTGCAGAACAATCTGATAGATTTTTACTTTAAGTGTGGACATACACGTTTTGCTTTGAAGGTGTTTGAGAAAATGCGTGTTCGCAATGTGGTTTCATGGACAACCGTGATATCTGGGCTGATCTCTTGTGGTGATTTACAGGAAGCAAGAAGGATATTTGATGAGATTCCATCTAAAAATGTTGTTTCATGGACAGCAATGATAAATGGGTATATTAGAAATCAACAACCTGAAGAAGCTCTTGAACTGTTTAAGAGAATGCAGGCTGAGAATATTTTCCCAAATGAGTATACAATGGTGAGCTTGATCAAAGCATGTACTGAAATGGGAATCTTAACTCTTGGTCGAGGGATTCACGACTATGCCATCAAGAACTGTATCGAAATTGGTGTTTATCTTGGGACGGCTCTGATTGACATGTACAGCAAATGTGGTAGTATAAAGGATGCAATAGAAGTTTTTGAGACGATGCCTAGAAAAAGTTTGCCGACATGGAACTCAATGATCACTAGCTTAGGAGTACATGGGTTGGGGCAGGAAGCTCTCAATCTTTTCAGTGAGATGGAAAGGGTAAATGTGAAGCCAGATGCAATCACTTTCATAGGCGTTTTATGCGCTTGTGTACATATAAAGAATGTAAAGGAAGGATGTGCTTACTTCACTCGAATGACACAGCATTATGGTATTGCACCAATTCCTGAGCATTATGAGTGCATGACTGAGCTATATGCTCGTTCTAATAACTTGGATGAAGCCTTCAAATCAACAAAAGCAATATCGATAGAGCCTGATTAG

mRNA sequence

ATGGTTCCATGTCTCTCATATACCCATGACGTTTTTCCGAGCAAGAATATTCCCCTGACCCCAAGAGGGAACATACGAGCGAAGAAGGCTCTCTTCTTACTTCAAAACTGCAAGAATTTCAAACACCTCAGGCAAATCCATGCCAAAATCATTCGTAGTGGCCTTTCTAACGATCAATTACTTACTAGGAAACTGATTCATCTCTACTCTACTCATGGAAGAATAGCGTATGCGATTCTTCTATTCTATCAAATCCAAAACCCTTGTACGTTTACTTGGAATCTGATAATCAGGGCCAACACTATCAATGGTCTCTCTGAACAAGCTCTCATGTTGTATAAGAACATGGTATGCCAAGGAATTGCAGCCGATAAGTTTACATTTCCATTTGTCATCAAAGCTTGTACAAATTTCTTATCCATTGACCTAGGAAAAGTAGTTCATGGGTCTTTAATCAAATACGGGTTTTCAGGGGACGTATTTGTGCAGAACAATCTGATAGATTTTTACTTTAAGTGTGGACATACACGTTTTGCTTTGAAGGTGTTTGAGAAAATGCGTGTTCGCAATGTGGTTTCATGGACAACCGTGATATCTGGGCTGATCTCTTGTGGTGATTTACAGGAAGCAAGAAGGATATTTGATGAGATTCCATCTAAAAATGTTGTTTCATGGACAGCAATGATAAATGGGTATATTAGAAATCAACAACCTGAAGAAGCTCTTGAACTGTTTAAGAGAATGCAGGCTGAGAATATTTTCCCAAATGAGTATACAATGGTGAGCTTGATCAAAGCATGTACTGAAATGGGAATCTTAACTCTTGGTCGAGGGATTCACGACTATGCCATCAAGAACTGTATCGAAATTGGTGTTTATCTTGGGACGGCTCTGATTGACATGTACAGCAAATGTGGTAGTATAAAGGATGCAATAGAAGTTTTTGAGACGATGCCTAGAAAAAGTTTGCCGACATGGAACTCAATGATCACTAGCTTAGGAGTACATGGGTTGGGGCAGGAAGCTCTCAATCTTTTCAGTGAGATGGAAAGGGTAAATGTGAAGCCAGATGCAATCACTTTCATAGGCGTTTTATGCGCTTGTGTACATATAAAGAATGTAAAGGAAGGATGTGCTTACTTCACTCGAATGACACAGCATTATGGTATTGCACCAATTCCTGAGCATTATGAGTGCATGACTGAGCTATATGCTCGTTCTAATAACTTGGATGAAGCCTTCAAATCAACAAAAGCAATATCGATAGAGCCTGATTAG

Coding sequence (CDS)

ATGGTTCCATGTCTCTCATATACCCATGACGTTTTTCCGAGCAAGAATATTCCCCTGACCCCAAGAGGGAACATACGAGCGAAGAAGGCTCTCTTCTTACTTCAAAACTGCAAGAATTTCAAACACCTCAGGCAAATCCATGCCAAAATCATTCGTAGTGGCCTTTCTAACGATCAATTACTTACTAGGAAACTGATTCATCTCTACTCTACTCATGGAAGAATAGCGTATGCGATTCTTCTATTCTATCAAATCCAAAACCCTTGTACGTTTACTTGGAATCTGATAATCAGGGCCAACACTATCAATGGTCTCTCTGAACAAGCTCTCATGTTGTATAAGAACATGGTATGCCAAGGAATTGCAGCCGATAAGTTTACATTTCCATTTGTCATCAAAGCTTGTACAAATTTCTTATCCATTGACCTAGGAAAAGTAGTTCATGGGTCTTTAATCAAATACGGGTTTTCAGGGGACGTATTTGTGCAGAACAATCTGATAGATTTTTACTTTAAGTGTGGACATACACGTTTTGCTTTGAAGGTGTTTGAGAAAATGCGTGTTCGCAATGTGGTTTCATGGACAACCGTGATATCTGGGCTGATCTCTTGTGGTGATTTACAGGAAGCAAGAAGGATATTTGATGAGATTCCATCTAAAAATGTTGTTTCATGGACAGCAATGATAAATGGGTATATTAGAAATCAACAACCTGAAGAAGCTCTTGAACTGTTTAAGAGAATGCAGGCTGAGAATATTTTCCCAAATGAGTATACAATGGTGAGCTTGATCAAAGCATGTACTGAAATGGGAATCTTAACTCTTGGTCGAGGGATTCACGACTATGCCATCAAGAACTGTATCGAAATTGGTGTTTATCTTGGGACGGCTCTGATTGACATGTACAGCAAATGTGGTAGTATAAAGGATGCAATAGAAGTTTTTGAGACGATGCCTAGAAAAAGTTTGCCGACATGGAACTCAATGATCACTAGCTTAGGAGTACATGGGTTGGGGCAGGAAGCTCTCAATCTTTTCAGTGAGATGGAAAGGGTAAATGTGAAGCCAGATGCAATCACTTTCATAGGCGTTTTATGCGCTTGTGTACATATAAAGAATGTAAAGGAAGGATGTGCTTACTTCACTCGAATGACACAGCATTATGGTATTGCACCAATTCCTGAGCATTATGAGTGCATGACTGAGCTATATGCTCGTTCTAATAACTTGGATGAAGCCTTCAAATCAACAAAAGCAATATCGATAGAGCCTGATTAG

Protein sequence

MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIEPD

Homology

[Close]

BLAST of CsGy3G024550 vs. NCBI nr
Match: XP_011651588.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic [Cucumis sativus])

HSP 1 Score: 737.6 bits (1903), Expect = 2.3e-209
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL
Sbjct: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG
Sbjct: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
           IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL
Sbjct: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
           XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID
Sbjct: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT
Sbjct: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI
Sbjct: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420

Query: 421 SIEPD 426
           SIEPD
Sbjct: 421 SIEPD 425

[Close]

BLAST of CsGy3G024550 vs. NCBI nr
Match: XP_008450021.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic isoform X1 [Cucumis melo] >XP_008450022.1 PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 699.5 bits (1804), Expect = 7.0e-198
Identity = 401/425 (94.35%), Postives = 409/425 (96.24%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MVPCLSYTHDVFPSKN  LTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL
Sbjct: 1   MVPCLSYTHDVFPSKNFSLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           LTRKLIHLYSTHGRI YAI LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG
Sbjct: 61  LTRKLIHLYSTHGRIVYAIFLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
           IAADKFTFPFVIKACTNFLSIDLGKVVHGS IKYGFSGD FVQNNLIDFYFKCGH   AL
Sbjct: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSSIKYGFSGDAFVQNNLIDFYFKCGHKHCAL 180

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRV NVVSWTT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KVFEKMRVCNVVSWTTVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
           XXXXXXXXXXXXX PNEYTMVSLIKACTEMGIL+LGRGIHDY IKNC EIGVYLGTALID
Sbjct: 241 XXXXXXXXXXXXXXPNEYTMVSLIKACTEMGILSLGRGIHDYTIKNCFEIGVYLGTALID 300

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGSIKDAIEVFETMPR+SLPTWNSMITSLGVHGLGQ+ALN+FSEMERVNV+PDAIT
Sbjct: 301 MYSKCGSIKDAIEVFETMPRRSLPTWNSMITSLGVHGLGQQALNIFSEMERVNVEPDAIT 360

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           F+GVLCACVH+KNVKEGCAYF RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI
Sbjct: 361 FVGVLCACVHMKNVKEGCAYFKRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420

Query: 421 SIEPD 426
           S+EPD
Sbjct: 421 SVEPD 425

[Close]

BLAST of CsGy3G024550 vs. NCBI nr
Match: XP_023527078.1 (pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 637.9 bits (1644), Expect = 2.5e-179
Identity = 376/425 (88.47%), Postives = 395/425 (92.94%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MVPCLS THDVF + N+ L+ RGNI AKKALFLLQNCKNFKHLRQIHAKIIRS +SNDQL
Sbjct: 17  MVPCLSSTHDVFATTNLLLSSRGNIGAKKALFLLQNCKNFKHLRQIHAKIIRSAISNDQL 76

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           LTRKLIHLYS+HGRIAYAI LF+QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG
Sbjct: 77  LTRKLIHLYSSHGRIAYAIFLFHQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 136

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
           IAADKFTFPFVIKACT   +ID+G+V+H SLIKYGFSGD FVQNNLIDFYFKCGH R AL
Sbjct: 137 IAADKFTFPFVIKACTTSFAIDIGRVIHASLIKYGFSGDTFVQNNLIDFYFKCGHKRCAL 196

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRV NVVSWTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 197 KVFEKMRVCNVVSWTTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 256

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
           XXXXXXXXXXXXX PNEYTMVSLIKACTEMGIL+LGRGIHDYAI N  EIGVYLGTALID
Sbjct: 257 XXXXXXXXXXXXXXPNEYTMVSLIKACTEMGILSLGRGIHDYAINNGFEIGVYLGTALID 316

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGSIKDAIEVF+TMP KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT
Sbjct: 317 MYSKCGSIKDAIEVFKTMPGKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 376

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           F+GVLCACVH+KNV+ GCAYF RM QHYGIAPIPEHY+CM ELYAR    DEAF+STKA+
Sbjct: 377 FVGVLCACVHMKNVEAGCAYFKRMAQHYGIAPIPEHYKCMAELYAR----DEAFESTKAM 436

Query: 421 SIEPD 426
           S+EPD
Sbjct: 437 SMEPD 437

[Close]

BLAST of CsGy3G024550 vs. NCBI nr
Match: XP_023527079.1 (pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 637.9 bits (1644), Expect = 2.5e-179
Identity = 376/425 (88.47%), Postives = 395/425 (92.94%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MVPCLS THDVF + N+ L+ RGNI AKKALFLLQNCKNFKHLRQIHAKIIRS +SNDQL
Sbjct: 1   MVPCLSSTHDVFATTNLLLSSRGNIGAKKALFLLQNCKNFKHLRQIHAKIIRSAISNDQL 60

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           LTRKLIHLYS+HGRIAYAI LF+QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG
Sbjct: 61  LTRKLIHLYSSHGRIAYAIFLFHQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
           IAADKFTFPFVIKACT   +ID+G+V+H SLIKYGFSGD FVQNNLIDFYFKCGH R AL
Sbjct: 121 IAADKFTFPFVIKACTTSFAIDIGRVIHASLIKYGFSGDTFVQNNLIDFYFKCGHKRCAL 180

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRV NVVSWTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KVFEKMRVCNVVSWTTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
           XXXXXXXXXXXXX PNEYTMVSLIKACTEMGIL+LGRGIHDYAI N  EIGVYLGTALID
Sbjct: 241 XXXXXXXXXXXXXXPNEYTMVSLIKACTEMGILSLGRGIHDYAINNGFEIGVYLGTALID 300

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGSIKDAIEVF+TMP KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT
Sbjct: 301 MYSKCGSIKDAIEVFKTMPGKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           F+GVLCACVH+KNV+ GCAYF RM QHYGIAPIPEHY+CM ELYAR    DEAF+STKA+
Sbjct: 361 FVGVLCACVHMKNVEAGCAYFKRMAQHYGIAPIPEHYKCMAELYAR----DEAFESTKAM 420

Query: 421 SIEPD 426
           S+EPD
Sbjct: 421 SMEPD 421

[Close]

BLAST of CsGy3G024550 vs. NCBI nr
Match: XP_022934151.1 (pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 633.3 bits (1632), Expect = 6.1e-178
Identity = 374/425 (88.00%), Postives = 394/425 (92.71%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MVPCLS THDVF + N+ L+ RGNI AKKALFLLQNCKNFK LRQIHAKIIRS +SNDQL
Sbjct: 1   MVPCLSSTHDVFATTNLLLSSRGNIGAKKALFLLQNCKNFKQLRQIHAKIIRSAISNDQL 60

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           LTRKLIHLYS+HGRIAYAI LF+QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG
Sbjct: 61  LTRKLIHLYSSHGRIAYAIFLFHQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
           IAADKFTFPFVIKACT   +ID+G+V+H SLIKYGFSGD FVQNNLIDFYFKCGH R AL
Sbjct: 121 IAADKFTFPFVIKACTTSFAIDIGRVIHASLIKYGFSGDTFVQNNLIDFYFKCGHKRCAL 180

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRV NVVSWTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KVFEKMRVCNVVSWTTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
           XXXXXXXXXXXXX PNEYTMVSLIKACTEMGIL+LGRGIHDYAI N  EIGVYLGTALID
Sbjct: 241 XXXXXXXXXXXXXXPNEYTMVSLIKACTEMGILSLGRGIHDYAINNGFEIGVYLGTALID 300

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGSIKDAIEVF+TMP KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT
Sbjct: 301 MYSKCGSIKDAIEVFKTMPGKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           F+GVLCACVH+KNV+ GCAYF RM QHYGIAPIPEHY+CM ELYA+    DEAF+STKA+
Sbjct: 361 FVGVLCACVHMKNVEAGCAYFKRMAQHYGIAPIPEHYKCMAELYAQ----DEAFESTKAM 420

Query: 421 SIEPD 426
           S+EPD
Sbjct: 421 SMEPD 421

[Close]

BLAST of CsGy3G024550 vs. TAIR10
Match: AT3G26630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 351.7 bits (901), Expect = 6.5e-97
Identity = 234/402 (58.21%), Postives = 293/402 (72.89%), Query Frame = 0


Query: 26  RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQI 85
           R+ +A + L+ C NF  L+QIH KII+  L+NDQLL R+LI + S+ G   YA L+F Q+
Sbjct: 19  RSPEASYFLRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQL 78

Query: 86  QNPCTFTWNLIIRANTINGLSEQALMLY-KNMVCQGIAADKFTFPFVIKACTNFLSIDLG 145
           Q+P TFTWNL+IR+ ++N    +AL+L+   M+      DKFTFPFVIKAC    SI LG
Sbjct: 79  QSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLG 138

Query: 146 KVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTXXXXXXXX 205
             VHG  IK GF  DVF QN L+D YFKCG      KVF+KM  R++VSWTT        
Sbjct: 139 TQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSN 198

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSLI 265
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PNE+T+V+L+
Sbjct: 199 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKPNEFTIVNLL 258

Query: 266 KACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP 325
           +A T++G L++GR +HDYA KN   +  +LGTALIDMYSKCGS++DA +VF+ M  KSL 
Sbjct: 259 QASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLA 318

Query: 326 TWNSMITSLGVHGLGQEALNLFSEM-ERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTR 385
           TWNSMITSLGVHG G+EAL+LF EM E  +V+PDAITF+GVL AC +  NVK+G  YFTR
Sbjct: 319 TWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTR 378

Query: 386 MTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIEPD 426
           M Q YGI+PI EH  CM +L  ++  +++A    +++  +PD
Sbjct: 379 MIQVYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDPD 420

[Close]

BLAST of CsGy3G024550 vs. TAIR10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-61
Identity = 135/423 (31.91%), Postives = 210/423 (49.65%), Query Frame = 0


Query: 13  PSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQ---LLTRKLIHLY 72
           P  + P         ++   L + C +   L+Q+HA  +R+    +     L  K++ L 
Sbjct: 34  PPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS 93

Query: 73  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN-GLSEQALMLYKNMVCQGIAA-DKFT 132
           S+   + YA  +F  I+N  +F WN +IRA   +    E+A MLY+ M+ +G ++ DK T
Sbjct: 94  SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHT 153

Query: 133 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 192
           FPFV+KAC        GK VH  ++K+GF GDV+V N LI  Y  CG    A KVF++M 
Sbjct: 154 FPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 213

Query: 193 VRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 252
            R++VSW +                                                   
Sbjct: 214 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFE------------------------- 273

Query: 253 XXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC---IEIGVYLGTALIDMYSK 312
                  P+ YTM S++ AC  +G L+LG   H + ++ C   + + V +  +LI+MY K
Sbjct: 274 -------PDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCK 333

Query: 313 CGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM--ERVNVKPDAITFI 372
           CGS++ A +VF+ M ++ L +WN+MI     HG  +EA+N F  M  +R NV+P+++TF+
Sbjct: 334 CGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFV 393

Query: 373 GVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISI 426
           G+L AC H   V +G  YF  M + Y I P  EHY C+ +L AR+  + EA     ++ +
Sbjct: 394 GLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPM 424

[Close]

BLAST of CsGy3G024550 vs. TAIR10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-59
Identity = 126/403 (31.27%), Postives = 200/403 (49.63%), Query Frame = 0


Query: 26  RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTH----GRIAYAILL 85
           + ++ L+LL+ C N    +Q+HA+ I+  L      +   +     H      + YA  +
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 86  FYQIQNPCTFTWNLIIRANTINGLS-EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 145
           F  I +PCTF +N +IR   +N +S E+AL  Y  M+ +G   D FT+P ++KACT   S
Sbjct: 89  FRGIDDPCTFDFNTMIR-GYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKS 148

Query: 146 IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTXXXX 205
           I  GK +HG + K G   DVFVQN+LI+ Y +CG    +  VFEK+  +   SW++    
Sbjct: 149 IREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSA 208

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNEYTM 265
                                                                   E  M
Sbjct: 209 RAGMGMWSECLLLFRGMCSETNLK------------------------------AEESGM 268

Query: 266 VSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPR 325
           VS + AC   G L LG  IH + ++N  E+ + + T+L+DMY KCG +  A+ +F+ M +
Sbjct: 269 VSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEK 328

Query: 326 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAY 385
           ++  T+++MI+ L +HG G+ AL +FS+M +  ++PD + ++ VL AC H   VKEG   
Sbjct: 329 RNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 388

Query: 386 FTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIE 424
           F  M +   + P  EHY C+ +L  R+  L+EA ++ ++I IE
Sbjct: 389 FAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIE 400

[Close]

BLAST of CsGy3G024550 vs. TAIR10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 222.2 bits (565), Expect = 5.9e-58
Identity = 182/458 (39.74%), Postives = 248/458 (54.15%), Query Frame = 0


Query: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTW 93
           L  C N   ++Q+HA+IIR  L  D  +  KLI   S   +   A+ +F Q+Q P     
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLC 85

Query: 94  NLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK 153
           N +IRA+  N    QA  ++  M   G+ AD FT+PF++KAC+    + + K++H  + K
Sbjct: 86  NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145

Query: 154 YGFSGDVFVQNNLIDFYFKCG--HTRFALKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXX 213
            G S D++V N LID Y +CG    R A+K+FEKM  R+ VSW +          XXXXX
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEXXXXX 205

Query: 214 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFP---------------- 273
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  
Sbjct: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 265

Query: 274 ------------------------------------------------NEYTMVSLIKAC 333
                                                           +   ++S++ AC
Sbjct: 266 XXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASGLKFDAAAVISILAAC 325

Query: 334 TEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 393
           TE G+L+LG  IH    ++ +    Y+  AL+DMY+KCG++K A +VF  +P+K L +WN
Sbjct: 326 TESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWN 385

Query: 394 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 426
           +M+  LGVHG G+EA+ LFS M R  ++PD +TFI VLC+C H   + EG  YF  M + 
Sbjct: 386 TMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKV 445

[Close]

BLAST of CsGy3G024550 vs. TAIR10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-57
Identity = 182/403 (45.16%), Postives = 252/403 (62.53%), Query Frame = 0


Query: 28  KKALFLLQNCKNFKHLRQIHAKIIRSGL---SNDQLLTRKLIHLYSTHGRIAYAILLFYQ 87
           +K   L+   ++   + QIHA I+R  L       +L  KL   Y++HG+I +++ LF+Q
Sbjct: 30  EKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQ 89

Query: 88  IQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG 147
             +P  F +   I   +INGL +QA +LY  ++   I  ++FTF  ++K+C    S   G
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC----STKSG 149

Query: 148 KVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS-WTTXXXXXXX 207
           K++H  ++K+G   D +V   L+D Y K G    A KVF++M  R++VS    XXXXXXX
Sbjct: 150 KLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSXXXXXXXXXXX 209

Query: 208 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSL 267
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       P+E T+V+ 
Sbjct: 210 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEGKPKPDEITVVAA 269

Query: 268 IKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 327
           + AC+++G L  GR IH +   + I + V + T LIDMYSKCGS+++A+ VF   PRK +
Sbjct: 270 LSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 329

Query: 328 PTWNSMITSLGVHGLGQEALNLFSEMERV-NVKPDAITFIGVLCACVHIKNVKEGCAYFT 387
             WN+MI    +HG  Q+AL LF+EM+ +  ++P  ITFIG L AC H   V EG   F 
Sbjct: 330 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFE 389

Query: 388 RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIEPD 426
            M Q YGI P  EHY C+  L  R+  L  A+++ K ++++ D
Sbjct: 390 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428

[Close]

BLAST of CsGy3G024550 vs. Swiss-Prot
Match: sp|Q38959|PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.2e-95
Identity = 234/402 (58.21%), Postives = 293/402 (72.89%), Query Frame = 0


Query: 26  RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQI 85
           R+ +A + L+ C NF  L+QIH KII+  L+NDQLL R+LI + S+ G   YA L+F Q+
Sbjct: 19  RSPEASYFLRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQL 78

Query: 86  QNPCTFTWNLIIRANTINGLSEQALMLY-KNMVCQGIAADKFTFPFVIKACTNFLSIDLG 145
           Q+P TFTWNL+IR+ ++N    +AL+L+   M+      DKFTFPFVIKAC    SI LG
Sbjct: 79  QSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLG 138

Query: 146 KVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTXXXXXXXX 205
             VHG  IK GF  DVF QN L+D YFKCG      KVF+KM  R++VSWTT        
Sbjct: 139 TQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSN 198

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSLI 265
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PNE+T+V+L+
Sbjct: 199 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKPNEFTIVNLL 258

Query: 266 KACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP 325
           +A T++G L++GR +HDYA KN   +  +LGTALIDMYSKCGS++DA +VF+ M  KSL 
Sbjct: 259 QASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLA 318

Query: 326 TWNSMITSLGVHGLGQEALNLFSEM-ERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTR 385
           TWNSMITSLGVHG G+EAL+LF EM E  +V+PDAITF+GVL AC +  NVK+G  YFTR
Sbjct: 319 TWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTR 378

Query: 386 MTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIEPD 426
           M Q YGI+PI EH  CM +L  ++  +++A    +++  +PD
Sbjct: 379 MIQVYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDPD 420

[Close]

BLAST of CsGy3G024550 vs. Swiss-Prot
Match: sp|Q0WQW5|PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-60
Identity = 135/423 (31.91%), Postives = 210/423 (49.65%), Query Frame = 0


Query: 13  PSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQ---LLTRKLIHLY 72
           P  + P         ++   L + C +   L+Q+HA  +R+    +     L  K++ L 
Sbjct: 34  PPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS 93

Query: 73  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN-GLSEQALMLYKNMVCQGIAA-DKFT 132
           S+   + YA  +F  I+N  +F WN +IRA   +    E+A MLY+ M+ +G ++ DK T
Sbjct: 94  SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHT 153

Query: 133 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 192
           FPFV+KAC        GK VH  ++K+GF GDV+V N LI  Y  CG    A KVF++M 
Sbjct: 154 FPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 213

Query: 193 VRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 252
            R++VSW +                                                   
Sbjct: 214 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFE------------------------- 273

Query: 253 XXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC---IEIGVYLGTALIDMYSK 312
                  P+ YTM S++ AC  +G L+LG   H + ++ C   + + V +  +LI+MY K
Sbjct: 274 -------PDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCK 333

Query: 313 CGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM--ERVNVKPDAITFI 372
           CGS++ A +VF+ M ++ L +WN+MI     HG  +EA+N F  M  +R NV+P+++TF+
Sbjct: 334 CGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFV 393

Query: 373 GVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISI 426
           G+L AC H   V +G  YF  M + Y I P  EHY C+ +L AR+  + EA     ++ +
Sbjct: 394 GLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPM 424

[Close]

BLAST of CsGy3G024550 vs. Swiss-Prot
Match: sp|Q9C6T2|PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.9e-58
Identity = 126/403 (31.27%), Postives = 200/403 (49.63%), Query Frame = 0


Query: 26  RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTH----GRIAYAILL 85
           + ++ L+LL+ C N    +Q+HA+ I+  L      +   +     H      + YA  +
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 86  FYQIQNPCTFTWNLIIRANTINGLS-EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 145
           F  I +PCTF +N +IR   +N +S E+AL  Y  M+ +G   D FT+P ++KACT   S
Sbjct: 89  FRGIDDPCTFDFNTMIR-GYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKS 148

Query: 146 IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTXXXX 205
           I  GK +HG + K G   DVFVQN+LI+ Y +CG    +  VFEK+  +   SW++    
Sbjct: 149 IREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSA 208

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNEYTM 265
                                                                   E  M
Sbjct: 209 RAGMGMWSECLLLFRGMCSETNLK------------------------------AEESGM 268

Query: 266 VSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPR 325
           VS + AC   G L LG  IH + ++N  E+ + + T+L+DMY KCG +  A+ +F+ M +
Sbjct: 269 VSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEK 328

Query: 326 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAY 385
           ++  T+++MI+ L +HG G+ AL +FS+M +  ++PD + ++ VL AC H   VKEG   
Sbjct: 329 RNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 388

Query: 386 FTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIE 424
           F  M +   + P  EHY C+ +L  R+  L+EA ++ ++I IE
Sbjct: 389 FAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIE 400

[Close]

BLAST of CsGy3G024550 vs. Swiss-Prot
Match: sp|Q9LS72|PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-56
Identity = 182/458 (39.74%), Postives = 248/458 (54.15%), Query Frame = 0


Query: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTW 93
           L  C N   ++Q+HA+IIR  L  D  +  KLI   S   +   A+ +F Q+Q P     
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLC 85

Query: 94  NLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK 153
           N +IRA+  N    QA  ++  M   G+ AD FT+PF++KAC+    + + K++H  + K
Sbjct: 86  NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145

Query: 154 YGFSGDVFVQNNLIDFYFKCG--HTRFALKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXX 213
            G S D++V N LID Y +CG    R A+K+FEKM  R+ VSW +          XXXXX
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEXXXXX 205

Query: 214 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFP---------------- 273
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  
Sbjct: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 265

Query: 274 ------------------------------------------------NEYTMVSLIKAC 333
                                                           +   ++S++ AC
Sbjct: 266 XXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASGLKFDAAAVISILAAC 325

Query: 334 TEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 393
           TE G+L+LG  IH    ++ +    Y+  AL+DMY+KCG++K A +VF  +P+K L +WN
Sbjct: 326 TESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWN 385

Query: 394 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 426
           +M+  LGVHG G+EA+ LFS M R  ++PD +TFI VLC+C H   + EG  YF  M + 
Sbjct: 386 TMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKV 445

[Close]

BLAST of CsGy3G024550 vs. Swiss-Prot
Match: sp|Q9SZT8|PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.4e-56
Identity = 182/403 (45.16%), Postives = 252/403 (62.53%), Query Frame = 0


Query: 28  KKALFLLQNCKNFKHLRQIHAKIIRSGL---SNDQLLTRKLIHLYSTHGRIAYAILLFYQ 87
           +K   L+   ++   + QIHA I+R  L       +L  KL   Y++HG+I +++ LF+Q
Sbjct: 30  EKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQ 89

Query: 88  IQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG 147
             +P  F +   I   +INGL +QA +LY  ++   I  ++FTF  ++K+C    S   G
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC----STKSG 149

Query: 148 KVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS-WTTXXXXXXX 207
           K++H  ++K+G   D +V   L+D Y K G    A KVF++M  R++VS    XXXXXXX
Sbjct: 150 KLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSXXXXXXXXXXX 209

Query: 208 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSL 267
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       P+E T+V+ 
Sbjct: 210 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEGKPKPDEITVVAA 269

Query: 268 IKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 327
           + AC+++G L  GR IH +   + I + V + T LIDMYSKCGS+++A+ VF   PRK +
Sbjct: 270 LSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 329

Query: 328 PTWNSMITSLGVHGLGQEALNLFSEMERV-NVKPDAITFIGVLCACVHIKNVKEGCAYFT 387
             WN+MI    +HG  Q+AL LF+EM+ +  ++P  ITFIG L AC H   V EG   F 
Sbjct: 330 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFE 389

Query: 388 RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAISIEPD 426
            M Q YGI P  EHY C+  L  R+  L  A+++ K ++++ D
Sbjct: 390 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428

[Close]

BLAST of CsGy3G024550 vs. TrEMBL
Match: tr|A0A1S3BNB7|A0A1S3BNB7_CUCME (pentatricopeptide repeat-containing protein At3g26630, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 4.6e-198
Identity = 401/425 (94.35%), Postives = 409/425 (96.24%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MVPCLSYTHDVFPSKN  LTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL
Sbjct: 1   MVPCLSYTHDVFPSKNFSLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           LTRKLIHLYSTHGRI YAI LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG
Sbjct: 61  LTRKLIHLYSTHGRIVYAIFLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
           IAADKFTFPFVIKACTNFLSIDLGKVVHGS IKYGFSGD FVQNNLIDFYFKCGH   AL
Sbjct: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSSIKYGFSGDAFVQNNLIDFYFKCGHKHCAL 180

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRV NVVSWTT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KVFEKMRVCNVVSWTTVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
           XXXXXXXXXXXXX PNEYTMVSLIKACTEMGIL+LGRGIHDY IKNC EIGVYLGTALID
Sbjct: 241 XXXXXXXXXXXXXXPNEYTMVSLIKACTEMGILSLGRGIHDYTIKNCFEIGVYLGTALID 300

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGSIKDAIEVFETMPR+SLPTWNSMITSLGVHGLGQ+ALN+FSEMERVNV+PDAIT
Sbjct: 301 MYSKCGSIKDAIEVFETMPRRSLPTWNSMITSLGVHGLGQQALNIFSEMERVNVEPDAIT 360

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           F+GVLCACVH+KNVKEGCAYF RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI
Sbjct: 361 FVGVLCACVHMKNVKEGCAYFKRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420

Query: 421 SIEPD 426
           S+EPD
Sbjct: 421 SVEPD 425

[Close]

BLAST of CsGy3G024550 vs. TrEMBL
Match: tr|A0A0A0LDS1|A0A0A0LDS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598920 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.6e-142
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 111 MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY 170
           MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY
Sbjct: 1   MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY 60

Query: 171 FKCGHTRFALKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 230
           FKCGHTRFALKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FKCGHTRFALKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI 290
           XXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI 180

Query: 291 GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME 350
           GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME
Sbjct: 181 GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME 240

Query: 351 RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL 410
           RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL
Sbjct: 241 RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL 300

Query: 411 DEAFKSTKAISIEPD 426
           DEAFKSTKAISIEPD
Sbjct: 301 DEAFKSTKAISIEPD 315

[Close]

BLAST of CsGy3G024550 vs. TrEMBL
Match: tr|A0A251Q8K2|A0A251Q8K2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G315700 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.9e-117
Identity = 276/424 (65.09%), Postives = 332/424 (78.30%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPR-GNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQ 60
           MV  LS T +V P   +    R     +++AL LLQNC  FKHL+QIHAKIIR+GLS+DQ
Sbjct: 2   MVARLSCTPEVLPKSKLFTGSRVTKFGSQEALTLLQNCATFKHLKQIHAKIIRNGLSHDQ 61

Query: 61  LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 120
           LL RKLIHL S++G++ YA L+F+QIQ P TFTWNL+I + TING S++AL+LY  M+ Q
Sbjct: 62  LLIRKLIHLCSSYGKMDYANLIFHQIQGPLTFTWNLMIMSYTINGCSQEALLLYSLMIHQ 121

Query: 121 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 180
           G   DKFTFPFVIKAC    + + GKVVHG  IK  FS D+FVQN L+DFYFKCG     
Sbjct: 122 GFPPDKFTFPFVIKACIASSAFEQGKVVHGLSIKNSFSRDMFVQNTLMDFYFKCGEIDCG 181

Query: 181 LKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
            +VFEKMRVRNVVSW  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 CRVFEKMRVRNVVSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 241 XXXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALI 300
           XXXXXXXXXXX    PNE+T+VSL+KACT +G L LGR IHD+A+KN  ++ V+LGTALI
Sbjct: 242 XXXXXXXXXXXGDVRPNEFTLVSLLKACTLLGSLKLGRWIHDFALKNGFKLDVFLGTALI 301

Query: 301 DMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 360
           D YSKCGS++DA  VF+ M  KSL TWN+MITSLGVHG G+EAL LF+EME+VNV+PDAI
Sbjct: 302 DTYSKCGSLEDARRVFDEMRIKSLATWNAMITSLGVHGFGEEALALFAEMEKVNVRPDAI 361

Query: 361 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKA 420
           TF+GVL AC+H  N++ GC YF  M++HYGI PI EHY CM ELY+R++ LDE  K  ++
Sbjct: 362 TFVGVLSACLHTNNLEAGCMYFKYMSKHYGITPILEHYTCMIELYSRADMLDEVCKLAQS 421

Query: 421 ISIE 424
           + ++
Sbjct: 422 MPVK 425

[Close]

BLAST of CsGy3G024550 vs. TrEMBL
Match: tr|A0A2N9EAW3|A0A2N9EAW3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3988 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.4e-116
Identity = 257/425 (60.47%), Postives = 304/425 (71.53%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQL 60
           MV CLSYT D  P  N     R    +++AL  L  C NFKH++QI+AKIIR GLS+DQL
Sbjct: 1   MVACLSYTPDPLPRTNPFPCSRLQFGSQEALLSLNKCTNFKHIKQIYAKIIRHGLSHDQL 60

Query: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120
           L RKL+ L S++G++ +A L+F+QIQ P TFTWNL+IR  TING S+QAL+L+  M+ QG
Sbjct: 61  LIRKLLRLCSSYGKMDFATLVFHQIQGPLTFTWNLMIRYYTINGCSQQALLLFNLMLSQG 120

Query: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFAL 180
              DKFTFPFVIKAC    +IDLGKVVHG  IK GF GD+FV N L+D YFKC       
Sbjct: 121 FPPDKFTFPFVIKACGAASTIDLGKVVHGLAIKTGFIGDMFVLNTLMDLYFKCRKVDCGC 180

Query: 181 KVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KVFEKMRVR+VVSWTT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       
Sbjct: 181 KVFEKMRVRSVVSWTTKISGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNQPEEA 240

Query: 241 XXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300
                         PNE+T+VSL+KACTEM  L LGR +HD+A KN  ++GV+LGTALID
Sbjct: 241 FELFWRMNIDNVR-PNEFTLVSLLKACTEMESLNLGRWVHDFAHKNGFKLGVFLGTALID 300

Query: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360
           MYSKCGS++DA  VF+ M  KSL TWNSMITSLGVHG G+EA++LF EMER NV+PDAIT
Sbjct: 301 MYSKCGSLEDARRVFDKMQLKSLATWNSMITSLGVHGCGEEAISLFVEMERANVQPDAIT 360

Query: 361 FIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKAI 420
           F+G+LCACV   N++EG   F  M +HYGI PIPEH  CM ELY R+  LDE      A+
Sbjct: 361 FVGLLCACVQTNNLEEGQRLFKYMGEHYGITPIPEHLTCMIELYNRAGMLDEVCILENAM 420

Query: 421 SIEPD 426
             EP+
Sbjct: 421 PSEPN 424

[Close]

BLAST of CsGy3G024550 vs. TrEMBL
Match: tr|A0A2P6S6R5|A0A2P6S6R5_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0176761 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.5e-116
Identity = 276/427 (64.64%), Postives = 336/427 (78.69%), Query Frame = 0


Query: 1   MVPCLSYTHDVFPSKNIPLTP--RGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSND 60
           MV CLS T +V P K+ PLT   +    +++AL LL+NC  F  L+QIHAKIIRS LS D
Sbjct: 2   MVACLSCTPEVLP-KSSPLTSCRQTKFGSQEALILLRNCTTFNRLKQIHAKIIRSSLSRD 61

Query: 61  QLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVC 120
           QL+ RKLI L S+HG++ YA L+F+QIQ   TFTWNL+I + TING S+QAL+LY +M+ 
Sbjct: 62  QLIMRKLIQLCSSHGKMDYATLVFHQIQGHLTFTWNLMIMSYTINGCSQQALLLYSHMIR 121

Query: 121 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRF 180
           QG+  DKFTFPFVIKAC +  + +LGKVVHG +IK  FSGD+F+QN L+DFYFK G    
Sbjct: 122 QGVPPDKFTFPFVIKACISSTAFELGKVVHGLVIKNSFSGDIFIQNTLMDFYFKSGQIDC 181

Query: 181 ALKVFEKMRVRNVVSWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
             +VFEKMRVR+VVSWTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 GSRVFEKMRVRSVVSWTTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 241 XXXXXXXXXXXXXXXFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 300
           XXXXXXXXXXXXXXX PNE+T+VSL+KACT+   L L R IHD+A+KN  +I V+LGTAL
Sbjct: 242 XXXXXXXXXXXXXXXRPNEFTLVSLLKACTQFESLKLARRIHDFALKNGFKIDVFLGTAL 301

Query: 301 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 360
           ID YSKCGS++DA  VF+ M  KSL TWNSMITSLGVHG G+EAL LF+ ME  NV+PDA
Sbjct: 302 IDTYSKCGSLEDAKRVFDKMQIKSLATWNSMITSLGVHGFGEEALALFAAMEEANVRPDA 361

Query: 361 ITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTK 420
           ITF+GVL AC+H  N+++GC +F  M++ YGI PI E+Y CM ELY+R + LDE  K  +
Sbjct: 362 ITFVGVLSACLHTNNLEDGCRHFKYMSERYGITPILENYTCMIELYSRFDMLDEVCKLVE 421

Query: 421 AISIEPD 426
           A+ ++P+
Sbjct: 422 AMPVKPN 427

The following BLAST results are available for this feature:

BLAST of CsGy3G024550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651588.1	2.3e-209	100.00	PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic ...	[more]
XP_008450021.1	7.0e-198	94.35	PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic ...	[more]
XP_023527078.1	2.5e-179	88.47	pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isofor...	[more]
XP_023527079.1	2.5e-179	88.47	pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isofor...	[more]
XP_022934151.1	6.1e-178	88.00	pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isofor...	[more]

BLAST of CsGy3G024550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26630.1	6.5e-97	58.21	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G59720.1	1.1e-61	31.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	1.1e-59	31.27	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G29230.1	5.9e-58	39.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G37380.1	1.3e-57	45.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy3G024550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38959\|PP257_ARATH	1.2e-95	58.21	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop...	[more]
sp\|Q0WQW5\|PPR85_ARATH	2.1e-60	31.91	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
sp\|Q9C6T2\|PPR68_ARATH	1.9e-58	31.27	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LS72\|PP261_ARATH	1.1e-56	39.74	Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SZT8\|PP354_ARATH	2.4e-56	45.16	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of CsGy3G024550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNB7\|A0A1S3BNB7_CUCME	4.6e-198	94.35	pentatricopeptide repeat-containing protein At3g26630, chloroplastic isoform X1 ...	[more]
tr\|A0A0A0LDS1\|A0A0A0LDS1_CUCSA	1.6e-142	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598920 PE=4 SV=1	[more]
tr\|A0A251Q8K2\|A0A251Q8K2_PRUPE	8.9e-117	65.09	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G315700 PE=4 SV=1	[more]
tr\|A0A2N9EAW3\|A0A2N9EAW3_FAGSY	4.4e-116	60.47	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3988 PE=4 SV=1	[more]
tr\|A0A2P6S6R5\|A0A2P6S6R5_ROSCH	7.5e-116	64.64	Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0176761 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G024550.1	CsGy3G024550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 88..135 e-value: 4.9E-8 score: 32.9 coord: 220..267 e-value: 2.5E-15 score: 56.3 coord: 325..368 e-value: 8.7E-9 score: 35.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 223..257 e-value: 4.1E-10 score: 37.2 coord: 163..192 e-value: 7.3E-4 score: 17.5 coord: 192..222 e-value: 5.3E-5 score: 21.1 coord: 296..322 e-value: 0.0015 score: 16.5 coord: 325..358 e-value: 2.2E-6 score: 25.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 296..321 e-value: 3.4E-4 score: 20.6 coord: 164..191 e-value: 0.0015 score: 18.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 322..356 score: 10.939
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 357..392 score: 6.533
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 190..220 score: 9.723
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 291..321 score: 8.079
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 221..255 score: 13.022
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 256..290 score: 5.755
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 159..189 score: 8.144
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 124..158 score: 5.097
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 89..123 score: 8.232
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 151..273 e-value: 6.8E-34 score: 118.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 21..150 e-value: 2.4E-12 score: 49.0 coord: 274..422 e-value: 3.1E-26 score: 94.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 169..349
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 220..421
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 22..122
None	No IPR available	PANTHER	PTHR24015:SF766	SUBFAMILY NOT NAMED	coord: 125..217
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 125..217
None	No IPR available	PANTHER	PTHR24015:SF766	SUBFAMILY NOT NAMED	coord: 220..421 coord: 22..122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G024550	Cla003234	Watermelon (97103) v1	cgybwmB220
CsGy3G024550	Csa3G598920	Cucumber (Chinese Long) v2	cgybcuB111
CsGy3G024550	ClCG05G012660	Watermelon (Charleston Gray)	cgybwcgB216
CsGy3G024550	CSPI03G26240	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G024550	CmaCh14G007640	Cucurbita maxima (Rimu)	cgybcmaB313
CsGy3G024550	CmoCh14G007780	Cucurbita moschata (Rifu)	cgybcmoB287
CsGy3G024550	Lsi05G004470	Bottle gourd (USVL1VR-Ls)	cgyblsiB201
CsGy3G024550	Cp4.1LG03g06520	Cucurbita pepo (Zucchini)	cgybcpeB402
CsGy3G024550	Cla97C05G094370	Watermelon (97103) v2	cgybwmbB208
CsGy3G024550	Bhi01G001530	Wax gourd	cgybwgoB273
CsGy3G024550	Carg09620	Silver-seed gourd	carcgybB0445

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G024550	Silver-seed gourd	carcgybB0377
CsGy3G024550	Silver-seed gourd	carcgybB0498
CsGy3G024550	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G024550	Cucurbita maxima (Rimu)	cgybcmaB293
CsGy3G024550	Cucurbita moschata (Rifu)	cgybcmoB269
CsGy3G024550	Cucurbita pepo (Zucchini)	cgybcpeB418
CsGy3G024550	Melon (DHL92) v3.5.1	cgybmeB202
CsGy3G024550	Melon (DHL92) v3.6.1	cgybmedB214
CsGy3G024550	Melon (DHL92) v3.6.1	cgybmedB217