CsGy3G022110 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G022110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionphotosynthetic NDH subunit of lumenal location 3, chloroplastic
LocationChr3 : 20491695 .. 20492568 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAGACTTAAAATTACTGGGTTCCTCAAGAAACAAACAGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCTGCTAACGAGTATTGGCTCGACGGCCCTTTGCCTGTCCCTTCTGTTGACAACAGTAAGCTTTTTCATTGAACAAGTTTGAACTGTTTGTGTGTGTTTTTGTTTTCCTTATCTGGGTGTACCTCCAAATTGGAAAATTCGAATTGGTTTGGTTAGTTTGACGGCAAAGACTAGAATTTGCTATGAATTATTTGTTACAGACATTGTGAATGAGCAAACGGGGACGCGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGATTGAAAAAATATGCATTTGATCTTCTGGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCAGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCAAACAGATTATTCGACAATTTCGAAAAGGTAAAAAGCAGAGAATTTTTACAAGTTCCTTCAAATATATGCAAAATTTCAAGCTGAAGTAGCTCCTTTTGTGCTTTGCAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAAACAACACCCATACTTCAAGAAGTCATGGATAGAATGGCATAA

mRNA sequence

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAGACTTAAAATTACTGGGTTCCTCAAGAAACAAACAGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCTGCTAACGAGTATTGGCTCGACGGCCCTTTGCCTGTCCCTTCTGTTGACAACAACATTGTGAATGAGCAAACGGGGACGCGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGATTGAAAAAATATGCATTTGATCTTCTGGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCAGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCAAACAGATTATTCGACAATTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAAACAACACCCATACTTCAAGAAGTCATGGATAGAATGGCATAA

Coding sequence (CDS)

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAGACTTAAAATTACTGGGTTCCTCAAGAAACAAACAGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCTGCTAACGAGTATTGGCTCGACGGCCCTTTGCCTGTCCCTTCTGTTGACAACAACATTGTGAATGAGCAAACGGGGACGCGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGATTGAAAAAATATGCATTTGATCTTCTGGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCAGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCAAACAGATTATTCGACAATTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAAACAACACCCATACTTCAAGAAGTCATGGATAGAATGGCATAA

Protein sequence

MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Homology
[Close]
BLAST of CsGy3G022110 vs. NCBI nr
Match: XP_004151964.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus] >KGN57960.1 hypothetical protein Csa_3G414060 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 2.4e-114
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of CsGy3G022110 vs. NCBI nr
Match: XP_008454569.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis melo])

HSP 1 Score: 416.4 bits (1069), Expect = 6.0e-113
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNI NEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of CsGy3G022110 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 374.0 bits (959), Expect = 3.4e-100
Identity = 195/218 (89.45%), Postives = 201/218 (92.20%), Query Frame = 0 

Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP LPKLQN  KRLKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]
BLAST of CsGy3G022110 vs. NCBI nr
Match: XP_022940191.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 365.5 bits (937), Expect = 1.2e-97
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0 

Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP L KLQ   KR KI G L+KQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNAS EIASANEYWLDGPLP+PSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]
BLAST of CsGy3G022110 vs. NCBI nr
Match: XP_022981605.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 188/218 (86.24%), Postives = 198/218 (90.83%), Query Frame = 0 

Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP L KL+   KR KI G L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNAS EIASANEYWLDGPLP+PSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]
BLAST of CsGy3G022110 vs. TAIR10
Match: AT3G01440.1 (PsbQ-like 1)

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 130/220 (59.09%), Postives = 164/220 (74.55%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTD--VSSHQISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL    K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRK 120
            L    G  +  +A  N +W+DGPLP+P + NNIVNE+TGTR+F+K G+Y+A+IGTKGR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFD +ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]
BLAST of CsGy3G022110 vs. TAIR10
Match: AT4G21280.2 (photosystem II subunit QA)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 56/183 (30.60%), Postives = 93/183 (50.82%), Query Frame = 0 

Query: 39  VSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLD-GPLPVPS------VDNNIVN 98
           V + Q   T R ++  LV+  L G +  +   A+   +  GP P PS       DN+  +
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNS--D 102

Query: 99  EQTGTRSFLKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFM 158
           +       LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++
Sbjct: 103 QARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYL 162

Query: 159 YYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVM 215
            YD + +IS+   DEK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+
Sbjct: 163 RYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVL 222

[Close]
BLAST of CsGy3G022110 vs. TAIR10
Match: AT4G05180.1 (photosystem II subunit Q-2)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-13
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 0 

Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIV 92
           ++ Q +VS  + S   R ++  LV+  L G +      A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NEQTGTRSF---LKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]
BLAST of CsGy3G022110 vs. TAIR10
Match: AT1G14150.1 (PsbQ-like 2)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 43/169 (25.44%), Postives = 77/169 (45.56%), Query Frame = 0 

Query: 47  TRRLALTSLVSVALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYI 106
           TRR  LTSL++  + G A+   A A E W                   GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGATSS-ALAQEKW-------------------GTRSFIKEKYFM 101

Query: 107 ANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDE 166
             +  +    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D    ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 167 KQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           +   V  AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]
BLAST of CsGy3G022110 vs. Swiss-Prot
Match: sp|Q9SGH4|PNSL3_ARATH (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-66
Identity = 130/220 (59.09%), Postives = 164/220 (74.55%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTD--VSSHQISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL    K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRK 120
            L    G  +  +A  N +W+DGPLP+P + NNIVNE+TGTR+F+K G+Y+A+IGTKGR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFD +ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]
BLAST of CsGy3G022110 vs. Swiss-Prot
Match: sp|Q9XFT3|PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 56/183 (30.60%), Postives = 93/183 (50.82%), Query Frame = 0 

Query: 39  VSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLD-GPLPVPS------VDNNIVN 98
           V + Q   T R ++  LV+  L G +  +   A+   +  GP P PS       DN+  +
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNS--D 102

Query: 99  EQTGTRSFLKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFM 158
           +       LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++
Sbjct: 103 QARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYL 162

Query: 159 YYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVM 215
            YD + +IS+   DEK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+
Sbjct: 163 RYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVL 222

[Close]
BLAST of CsGy3G022110 vs. Swiss-Prot
Match: sp|Q41932|PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 0 

Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIV 92
           ++ Q +VS  + S   R ++  LV+  L G +      A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NEQTGTRSF---LKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]
BLAST of CsGy3G022110 vs. Swiss-Prot
Match: sp|P83646|PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 0 

Query: 47  TRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPS--VDNNIVNEQT-GTRSFLK 106
           T R A+  LV+  + G A  +  +A A +    GP P PS  +   + ++Q   T   L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 107 TGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISA 166
              Y+  +       R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 167 AADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
              DEK+ L DL  +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]
BLAST of CsGy3G022110 vs. Swiss-Prot
Match: sp|Q0D5P8|PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 0 

Query: 47  TRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPS--VDNNIVNEQT-GTRSFLK 106
           T R A+  LV+  + G A  +  +A A +    GP P PS  +   + ++Q   T   L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 107 TGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISA 166
              Y+  +       R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 167 AADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
              DEK+ L DL  +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]
BLAST of CsGy3G022110 vs. TrEMBL
Match: tr|A0A0A0L7N1|A0A0A0L7N1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.6e-114
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of CsGy3G022110 vs. TrEMBL
Match: tr|A0A1S3BZP3|A0A1S3BZP3_CUCME (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494958 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 3.9e-113
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNI NEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of CsGy3G022110 vs. TrEMBL
Match: tr|A0A2I4H8E8|A0A2I4H8E8_9ROSI (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014410 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.5e-72
Identity = 148/222 (66.67%), Postives = 177/222 (79.73%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLPKLQNI---HKRLKITGFL-KKQTDVSSHQISLTRRLALTSLV 60
           MAR+A++NG    +P LPK  N+     R+KI GFL KK   + +H +  TRRLA+ SL 
Sbjct: 1   MARMADINGISKTLPALPKFPNVKWTSNRVKIVGFLGKKSEGLGTHPLQTTRRLAI-SLA 60

Query: 61  SVALFGNASP---EIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKG 120
           S+AL GN++     +A  N +W+DGPLPVP V N I NE+TGTRSFLK GIY+ANIG KG
Sbjct: 61  SIALIGNSANGMISLADDNGFWIDGPLPVPPVYNEIANEKTGTRSFLKKGIYMANIGIKG 120

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDL 180
             YRL+KYAFDLLAMADL+G+DTLNYVR+YLRLKSTFMYYDFDKVISAA  +EKQPL+DL
Sbjct: 121 SAYRLRKYAFDLLAMADLVGQDTLNYVRRYLRLKSTFMYYDFDKVISAAPVNEKQPLLDL 180

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           ANRLFD+FEKLEDAAK+KNL +TESYY+ TT ILQEVM+RMA
Sbjct: 181 ANRLFDSFEKLEDAAKKKNLPQTESYYRDTTVILQEVMERMA 221

[Close]
BLAST of CsGy3G022110 vs. TrEMBL
Match: tr|A0A251PNE7|A0A251PNE7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G201300 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.7e-71
Identity = 146/221 (66.06%), Postives = 171/221 (77.38%), Query Frame = 0 

Query: 1   MARLANLNGKFSAIPNLP---KLQNIHKRLKITGFL-KKQTDVSSHQISLTRRLALTSLV 60
           MARLANLNG    +P +P     Q   KR+ I GF+ KK+ D     +  TRRLAL  L 
Sbjct: 1   MARLANLNGVSETLPAIPXXXXXQGTQKRVSIVGFMGKKKDDFQEQPLQTTRRLAL-GLA 60

Query: 61  SVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGR 120
           S+AL GN+     +A  N +W+DGPLPVPS +N I NE+TGTRSFLK G+Y+ANIGTKGR
Sbjct: 61  SIALVGNSCNGVSLAEGNGFWIDGPLPVPSAENKIANEKTGTRSFLKKGLYMANIGTKGR 120

Query: 121 KYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLA 180
           K+RLKKYAFDLLAMADLI +DTLNYVR++LRLKSTFMY+DFD+VISAA  DEKQPL DLA
Sbjct: 121 KFRLKKYAFDLLAMADLIAQDTLNYVRRFLRLKSTFMYFDFDQVISAAPVDEKQPLTDLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           NRLFD  EKL+ A +Q+NLSETESYY+ TT ILQEVMDRMA
Sbjct: 181 NRLFDTVEKLDGAVRQRNLSETESYYKDTTVILQEVMDRMA 220

[Close]
BLAST of CsGy3G022110 vs. TrEMBL
Match: tr|W9QQM8|W9QQM8_9ROSA (Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis OX=981085 GN=L484_021171 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.7e-68
Identity = 143/224 (63.84%), Postives = 166/224 (74.11%), Query Frame = 0 

Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTD---VSSHQISLTRRLALTS 60
           MARLANLNG     +    LP L+   KR  I GF  K+ D    S H +  TRR     
Sbjct: 1   MARLANLNGISETLAGALRLPSLRRTQKRANIVGFQGKKKDDHSQSEHNVQTTRRKLALG 60

Query: 61  LVSVALFGNAS---PEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGT 120
           L S+AL GN +     +A  N +W+DGPLPVP+VDNNI NE+TGTRSFLK GIY+A+IGT
Sbjct: 61  LASIALVGNTTCNGVSLAEDNGFWIDGPLPVPTVDNNIANEKTGTRSFLKKGIYMADIGT 120

Query: 121 KGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLV 180
           K RKYRL+K AFDLLA+ DLIGKDTLNYV+KYLRLKSTFMYYDFDKVI+AA  D+KQPL 
Sbjct: 121 KNRKYRLRKCAFDLLALEDLIGKDTLNYVQKYLRLKSTFMYYDFDKVITAATVDDKQPLT 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
            LANRLFD+FEKLE A KQ+NL ETE++Y+ T  ILQEVMDRMA
Sbjct: 181 HLANRLFDSFEKLEGATKQRNLPETETFYKDTKVILQEVMDRMA 224

The following BLAST results are available for this feature:
BLAST of CsGy3G022110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151964.12.4e-114100.00PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu... [more]
XP_008454569.16.0e-11398.60PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu... [more]
XP_022139520.13.4e-10089.45photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara... [more]
XP_022940191.11.2e-9786.70photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita mosch... [more]
XP_022981605.11.0e-9686.24photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxim... [more]
BLAST of CsGy3G022110 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01440.11.2e-6759.09PsbQ-like 1[more]
AT4G21280.21.1e-1530.60photosystem II subunit QA[more]
AT4G05180.16.5e-1329.95photosystem II subunit Q-2[more]
AT1G14150.11.4e-1025.44PsbQ-like 2[more]
BLAST of CsGy3G022110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SGH4|PNSL3_ARATH2.2e-6659.09Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t... [more]
sp|Q9XFT3|PSBQ1_ARATH1.9e-1430.60Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
sp|Q41932|PSBQ2_ARATH1.2e-1129.95Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
sp|P83646|PSBQ_ORYSI3.4e-1131.21Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ... [more]
sp|Q0D5P8|PSBQ_ORYSJ3.4e-1131.21Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic... [more]
BLAST of CsGy3G022110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7N1|A0A0A0L7N1_CUCSA1.6e-114100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=4 SV=1[more]
tr|A0A1S3BZP3|A0A1S3BZP3_CUCME3.9e-11398.60photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo ... [more]
tr|A0A2I4H8E8|A0A2I4H8E8_9ROSI1.5e-7266.67photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Juglans regia... [more]
tr|A0A251PNE7|A0A251PNE7_PRUPE3.7e-7166.06Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G201300 PE=4 SV=1[more]
tr|W9QQM8|W9QQM8_9ROSA1.7e-6863.84Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis OX=981085 GN=L484_021171... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_dom_sf
IPR008797PSII_PsbQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009344 nitrite reductase complex [NAD(P)H]
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G022110.1CsGy3G022110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.120.290coord: 77..215
e-value: 2.6E-46
score: 159.4
NoneNo IPR availablePANTHERPTHR33399:SF2PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTICcoord: 1..215
IPR008797Oxygen-evolving enhancer protein 3PFAMPF05757PsbQcoord: 29..215
e-value: 2.5E-56
score: 190.5
IPR008797Oxygen-evolving enhancer protein 3PANTHERPTHR33399FAMILY NOT NAMEDcoord: 1..215
IPR023222PsbQ-like domain superfamilySUPERFAMILYSSF101112Oxygen-evolving enhancer protein 3,coord: 105..215