Carg05650 (gene) Silver-seed gourd

Overview
NameCarg05650
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionoxygen-evolving enhancer protein 3-2, chloroplastic-like
LocationCucurbita_argyrosperma_scaffold_033 : 149858 .. 150899 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGGATAACTGAATTAGAAGCTCTGCCTCTTTCTATTGCCAATTCCTCCGTTTCTCTTCAAAGCTTTGCATCAATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAACGGGGCTTCTCGAGAAACAAGTGGAGGTTTCCTCTCATGAAATCTCATTGACAAGAAGATTGGCTCTTACCAGTCTCGCATCTGTCGCTCTCTTCGGCAATGCACCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAGTAAGCTTTCTGTTTCTTCATGTAGAACAAGTTGAAAGTCGTTTGGTGTTTGTTAGTTCATGATGGATTCTTTGTTACAGACATAGCGAACGAGAAAACGGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTATGTGAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGGTAAAGAACAAAAAAGCTTCCAAAAATCTGCAATTCTTGAAGCTGAAGTTTCTTGTTTTGTGTGTTTGTAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAAACTGTGGAAGTTTTTGAGAAGATTAAGGATCAGTTTCCTTTTTTGTCCACTGTTCTTCTGTTGTTCTTGTTTATAATTCGATTCGATTTTGCATCCATATATAAATGTGGCGTAACGATGCAATAATAGTGGTTCGAGTGTTTAATCTTAGTTCAACAA

mRNA sequence

AAACGGATAACTGAATTAGAAGCTCTGCCTCTTTCTATTGCCAATTCCTCCGTTTCTCTTCAAAGCTTTGCATCAATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAACGGGGCTTCTCGAGAAACAAGTGGAGGTTTCCTCTCATGAAATCTCATTGACAAGAAGATTGGCTCTTACCAGTCTCGCATCTGTCGCTCTCTTCGGCAATGCACCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACGGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTATGTGAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAAACTGTGGAAGTTTTTGAGAAGATTAAGGATCAGTTTCCTTTTTTGTCCACTGTTCTTCTGTTGTTCTTGTTTATAATTCGATTCGATTTTGCATCCATATATAAATGTGGCGTAACGATGCAATAATAGTGGTTCGAGTGTTTAATCTTAGTTCAACAA

Coding sequence (CDS)

ATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAACGGGGCTTCTCGAGAAACAAGTGGAGGTTTCCTCTCATGAAATCTCATTGACAAGAAGATTGGCTCTTACCAGTCTCGCATCTGTCGCTCTCTTCGGCAATGCACCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACGGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTATGTGAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAA

Protein sequence

MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Homology
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BLAST of Carg05650 vs. NCBI nr
Match: XP_023525405.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 1.3e-112
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITG LEKQ EVSSHEISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]
BLAST of Carg05650 vs. NCBI nr
Match: XP_022940191.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 413.3 bits (1061), Expect = 5.1e-112
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKI GLLEKQ EVSSHE+SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]
BLAST of Carg05650 vs. NCBI nr
Match: XP_022981605.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 410.2 bits (1053), Expect = 4.3e-111
Identity = 212/218 (97.25%), Postives = 214/218 (98.17%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKL+KTRKRSKI GLLEKQ EVSSH ISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]
BLAST of Carg05650 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 387.9 bits (995), Expect = 2.3e-104
Identity = 199/218 (91.28%), Postives = 204/218 (93.58%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]
BLAST of Carg05650 vs. NCBI nr
Match: XP_004151964.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus] >KGN57960.1 hypothetical protein Csa_3G414060 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 2.1e-97
Identity = 190/218 (87.16%), Postives = 198/218 (90.83%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNG   KFSAIP L KLQ   KR KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of Carg05650 vs. TAIR10
Match: AT3G01440.1 (PsbQ-like 1)

HSP 1 Score: 248.1 bits (632), Expect = 5.2e-66
Identity = 128/223 (57.40%), Postives = 164/223 (73.54%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVE--VSSHEISLTRRLAL--- 60
           MA   +LN ++   + +P L KL ++RK  K +G   ++ E       + +TRR+ L   
Sbjct: 1   MAHFIDLNSLT---NTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  TSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTE 120
            S+    + G   V +A  N +W+DGPLPIP +YNNI NEKTGTR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTD 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAA   +KQPLTD
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETE+ Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]
BLAST of Carg05650 vs. TAIR10
Match: AT4G21280.2 (photosystem II subunit QA)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 54/181 (29.83%), Postives = 90/181 (49.72%), Query Frame = 0 

Query: 42  VSSHEISLTRRLALTSLASVALFGNAPVEIASANEYWLD-GPLPIPSVYNNIANEKTG-T 101
           V + +   T R ++  L +  L G + V+   A+   +  GP P PS       + +   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 102 RSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 161
           R F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 162 DFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDR 218
           D + +IS+    EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]
BLAST of Carg05650 vs. TAIR10
Match: AT4G05180.1 (photosystem II subunit Q-2)

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-13
Identity = 61/194 (31.44%), Postives = 93/194 (47.94%), Query Frame = 0 

Query: 30  SKITGL-LEKQVEVSSHEISLTRRLALTSLASVALFGNAPVE--IASANEYWLDGPLPIP 89
           S+ TGL +  Q  VS  E S   R ++  L +  L G + V+   A A    + GP P+P
Sbjct: 40  SQRTGLVIRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLP 99

Query: 90  SVYNNIANEKTGTRSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYV 149
           S      +     R F   LK   YI  +       R K  A +++ +   I K    YV
Sbjct: 100 SGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYV 159

Query: 150 RKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYY 209
           +  LRL+++++ YD + VISA    EKQ L DL  +LF   + L+ AA+ K+  + E YY
Sbjct: 160 QNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYY 219

Query: 210 QQTTPILQEVMDRM 218
            +T   L  V+ ++
Sbjct: 220 SETVSSLNNVLAKL 229

[Close]
BLAST of Carg05650 vs. TAIR10
Match: AT1G14150.1 (PsbQ-like 2)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-11
Identity = 43/169 (25.44%), Postives = 76/169 (44.97%), Query Frame = 0 

Query: 50  TRRLALTSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYI 109
           TRR  LTSL +  + G A                      + +A EK GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGA--------------------TSSALAQEKWGTRSFIKEKYFM 101

Query: 110 ANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGE 169
             +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 170 KQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           +      AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]
BLAST of Carg05650 vs. Swiss-Prot
Match: sp|Q9SGH4|PNSL3_ARATH (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 9.3e-65
Identity = 128/223 (57.40%), Postives = 164/223 (73.54%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVE--VSSHEISLTRRLAL--- 60
           MA   +LN ++   + +P L KL ++RK  K +G   ++ E       + +TRR+ L   
Sbjct: 1   MAHFIDLNSLT---NTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  TSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTE 120
            S+    + G   V +A  N +W+DGPLPIP +YNNI NEKTGTR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTD 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAA   +KQPLTD
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETE+ Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]
BLAST of Carg05650 vs. Swiss-Prot
Match: sp|Q9XFT3|PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-13
Identity = 54/181 (29.83%), Postives = 90/181 (49.72%), Query Frame = 0 

Query: 42  VSSHEISLTRRLALTSLASVALFGNAPVEIASANEYWLD-GPLPIPSVYNNIANEKTG-T 101
           V + +   T R ++  L +  L G + V+   A+   +  GP P PS       + +   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 102 RSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 161
           R F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 162 DFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDR 218
           D + +IS+    EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]
BLAST of Carg05650 vs. Swiss-Prot
Match: sp|Q41932|PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 61/194 (31.44%), Postives = 93/194 (47.94%), Query Frame = 0 

Query: 30  SKITGL-LEKQVEVSSHEISLTRRLALTSLASVALFGNAPVE--IASANEYWLDGPLPIP 89
           S+ TGL +  Q  VS  E S   R ++  L +  L G + V+   A A    + GP P+P
Sbjct: 40  SQRTGLVIRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLP 99

Query: 90  SVYNNIANEKTGTRSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYV 149
           S      +     R F   LK   YI  +       R K  A +++ +   I K    YV
Sbjct: 100 SGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYV 159

Query: 150 RKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYY 209
           +  LRL+++++ YD + VISA    EKQ L DL  +LF   + L+ AA+ K+  + E YY
Sbjct: 160 QNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYY 219

Query: 210 QQTTPILQEVMDRM 218
            +T   L  V+ ++
Sbjct: 220 SETVSSLNNVLAKL 229

[Close]
BLAST of Carg05650 vs. Swiss-Prot
Match: sp|P12301|PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBQ PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-11
Identity = 62/229 (27.07%), Postives = 107/229 (46.72%), Query Frame = 0 

Query: 1   MARLANLNGVSE-------KFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRL 60
           MA +A L G S+       + S   +LS    +R      GL  +  +VS+ E   +RR 
Sbjct: 5   MASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSA-EAETSRRA 64

Query: 61  ALTSLASVALFGNAPVEIASANEYWLDGPLP-----IPSVYNNIANEKTGTRSFLKTGIY 120
            L  +A+    G+    + +     + GP P     +P   N+    + GT  + K   Y
Sbjct: 65  MLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENS-DQARDGTLPYTKDRFY 124

Query: 121 IANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDG 180
           +  +       R K  A ++L +   I +     ++  LRL+++++ YD   VISA    
Sbjct: 125 LQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKD 184

Query: 181 EKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           EK+ L +L ++LF + + L+ AAK K+ +E E YY QT   + EV+ ++
Sbjct: 185 EKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

[Close]
BLAST of Carg05650 vs. Swiss-Prot
Match: sp|Q9XI73|PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-10
Identity = 43/169 (25.44%), Postives = 76/169 (44.97%), Query Frame = 0 

Query: 50  TRRLALTSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYI 109
           TRR  LTSL +  + G A                      + +A EK GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGA--------------------TSSALAQEKWGTRSFIKEKYFM 101

Query: 110 ANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGE 169
             +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 170 KQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           +      AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]
BLAST of Carg05650 vs. TrEMBL
Match: tr|A0A0A0L7N1|A0A0A0L7N1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.4e-97
Identity = 190/218 (87.16%), Postives = 198/218 (90.83%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNG   KFSAIP L KLQ   KR KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of Carg05650 vs. TrEMBL
Match: tr|A0A1S3BZP3|A0A1S3BZP3_CUCME (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494958 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 4.0e-97
Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60
           MARLANLNG   KFSAIP L KLQ   K+ KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           FDNFEKLE+AAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]
BLAST of Carg05650 vs. TrEMBL
Match: tr|A0A2I4H8E8|A0A2I4H8E8_9ROSI (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014410 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.4e-73
Identity = 146/222 (65.77%), Postives = 179/222 (80.63%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVE-VSSHEISLTRRLALTSLA 60
           MAR+A++NG+S+   A+PK   ++ T  R KI G L K+ E + +H +  TRRLA+ SLA
Sbjct: 1   MARMADINGISKTLPALPKFPNVKWTSNRVKIVGFLGKKSEGLGTHPLQTTRRLAI-SLA 60

Query: 61  SVALFGNAP---VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEG 120
           S+AL GN+    + +A  N +W+DGPLP+P VYN IANEKTGTRSFLK GIY+ANIG +G
Sbjct: 61  SIALIGNSANGMISLADDNGFWIDGPLPVPPVYNEIANEKTGTRSFLKKGIYMANIGIKG 120

Query: 121 RKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDL 180
             YRL++YAFDLLAMADL+G+DTLNYVR+YLRLKSTFMYYDFD VISAA   EKQPL DL
Sbjct: 121 SAYRLRKYAFDLLAMADLVGQDTLNYVRRYLRLKSTFMYYDFDKVISAAPVNEKQPLLDL 180

Query: 181 ANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           ANRLFD+FEKLEDAAK+KNL +TE+YY+ TT ILQEVM+RMA
Sbjct: 181 ANRLFDSFEKLEDAAKKKNLPQTESYYRDTTVILQEVMERMA 221

[Close]
BLAST of Carg05650 vs. TrEMBL
Match: tr|A0A251PNE7|A0A251PNE7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G201300 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 9.9e-72
Identity = 148/221 (66.97%), Postives = 174/221 (78.73%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLL-EKQVEVSSHEISLTRRLALTSLA 60
           MARLANLNGVSE   AIP     Q T+KR  I G + +K+ +     +  TRRLAL  LA
Sbjct: 1   MARLANLNGVSETLPAIPXXXXXQGTQKRVSIVGFMGKKKDDFQEQPLQTTRRLAL-GLA 60

Query: 61  SVALFGNA--PVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGR 120
           S+AL GN+   V +A  N +W+DGPLP+PS  N IANEKTGTRSFLK G+Y+ANIGT+GR
Sbjct: 61  SIALVGNSCNGVSLAEGNGFWIDGPLPVPSAENKIANEKTGTRSFLKKGLYMANIGTKGR 120

Query: 121 KYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLA 180
           K+RLK+YAFDLLAMADLI +DTLNYVR++LRLKSTFMY+DFD VISAA   EKQPLTDLA
Sbjct: 121 KFRLKKYAFDLLAMADLIAQDTLNYVRRFLRLKSTFMYFDFDQVISAAPVDEKQPLTDLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           NRLFD  EKL+ A +Q+NLSETE+YY+ TT ILQEVMDRMA
Sbjct: 181 NRLFDTVEKLDGAVRQRNLSETESYYKDTTVILQEVMDRMA 220

[Close]
BLAST of Carg05650 vs. TrEMBL
Match: tr|W9QQM8|W9QQM8_9ROSA (Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis OX=981085 GN=L484_021171 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.7e-69
Identity = 142/224 (63.39%), Postives = 171/224 (76.34%), Query Frame = 0 

Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVE---VSSHEISLTRRLALTS 60
           MARLANLNG+SE  +   +L  L++T+KR+ I G   K+ +    S H +  TRR     
Sbjct: 1   MARLANLNGISETLAGALRLPSLRRTQKRANIVGFQGKKKDDHSQSEHNVQTTRRKLALG 60

Query: 61  LASVALFGNAP---VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGT 120
           LAS+AL GN     V +A  N +W+DGPLP+P+V NNIANEKTGTRSFLK GIY+A+IGT
Sbjct: 61  LASIALVGNTTCNGVSLAEDNGFWIDGPLPVPTVDNNIANEKTGTRSFLKKGIYMADIGT 120

Query: 121 EGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT 180
           + RKYRL++ AFDLLA+ DLIGKDTLNYV+KYLRLKSTFMYYDFD VI+AA   +KQPLT
Sbjct: 121 KNRKYRLRKCAFDLLALEDLIGKDTLNYVQKYLRLKSTFMYYDFDKVITAATVDDKQPLT 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
            LANRLFD+FEKLE A KQ+NL ETE +Y+ T  ILQEVMDRMA
Sbjct: 181 HLANRLFDSFEKLEGATKQRNLPETETFYKDTKVILQEVMDRMA 224

The following BLAST results are available for this feature:
BLAST of Carg05650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525405.11.3e-11298.17photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita pepo ... [more]
XP_022940191.15.1e-11297.71photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita mosch... [more]
XP_022981605.14.3e-11197.25photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxim... [more]
XP_022139520.12.3e-10491.28photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara... [more]
XP_004151964.12.1e-9787.16PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu... [more]
BLAST of Carg05650 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01440.15.2e-6657.40PsbQ-like 1[more]
AT4G21280.21.2e-1429.83photosystem II subunit QA[more]
AT4G05180.16.6e-1331.44photosystem II subunit Q-2[more]
AT1G14150.12.1e-1125.44PsbQ-like 2[more]
BLAST of Carg05650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SGH4|PNSL3_ARATH9.3e-6557.40Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t... [more]
sp|Q9XFT3|PSBQ1_ARATH2.2e-1329.83Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
sp|Q41932|PSBQ2_ARATH1.2e-1131.44Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
sp|P12301|PSBQ_SPIOL5.9e-1127.07Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 G... [more]
sp|Q9XI73|PNSL2_ARATH3.8e-1025.44Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t... [more]
BLAST of Carg05650 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7N1|A0A0A0L7N1_CUCSA1.4e-9787.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=4 SV=1[more]
tr|A0A1S3BZP3|A0A1S3BZP3_CUCME4.0e-9786.70photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo ... [more]
tr|A0A2I4H8E8|A0A2I4H8E8_9ROSI2.4e-7365.77photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Juglans regia... [more]
tr|A0A251PNE7|A0A251PNE7_PRUPE9.9e-7266.97Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G201300 PE=4 SV=1[more]
tr|W9QQM8|W9QQM8_9ROSA2.7e-6963.39Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis OX=981085 GN=L484_021171... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_dom_sf
IPR008797PSII_PsbQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05650-RACarg05650-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008797Oxygen-evolving enhancer protein 3PFAMPF05757PsbQcoord: 24..218
e-value: 6.0E-55
score: 186.0
IPR008797Oxygen-evolving enhancer protein 3PANTHERPTHR33399FAMILY NOT NAMEDcoord: 1..218
NoneNo IPR availableGENE3DG3DSA:1.20.120.290coord: 80..218
e-value: 1.4E-46
score: 160.3
NoneNo IPR availablePANTHERPTHR33399:SF2PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTICcoord: 1..218
IPR023222PsbQ-like domain superfamilySUPERFAMILYSSF101112Oxygen-evolving enhancer protein 3,coord: 108..218