CsGy3G021560 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021560
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	rho-N domain-containing protein 1, chloroplastic isoform X7
Location	Chr3 : 19635813 .. 19639905 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTCTTCAAAGAAATGCAAATAAAAAACCCTTCCTTTCCTCACTAAAACCTTTCCTTCCTTCCAGGTGTCTTAACCAGCAATGTCTCAAGCCATTCATCTTCTTCCTCACAACCCTACAGGTATCTGTTCTTCATATCCACAAAATCTCTGTTGGGTGCTCTTTATTTTTGTTCTTTGCTTGCTTAAAGGCTGGGAAATTAAGTACACTATTATTTTTACATTTACTGGGTGTTTCTAATTTCCATATAATTTCATGTGTTTTGTCCTAACGATCAAATGTTTGCATTAAGGTCTCTAAAGTTCTCGAATTTTGAATTTCTATAGGTTTTAGCGCCTCTTGGTTTTATCTGTGTTTTGTTGTTTACTTTTCTATTTGGTTGAATCTGTTTGTGGAGAAATTAAAGCTTTGCACTGGTTGGATTTCGTTCGACTTTTTGTGTTGAGCTTGTTCTGTTTCTCTCTATTTTCCCTTTTCTAAGTTTAGGTTTGATTTTAGAGTACTTAATACCATTTTCTGATTGTTTGAAAATTCTCTACTTGGTTGGATTACATGACCCTTTGGTTTCCTTTGCTGTATCATATTCTGGCCTTCTCGAATTGATGTAGATGTATGAGTTTTCTTTTCCTCAGTTTTTGGAGGAAGGTCAAGATGTAATGGTTACATCTGATATTGGGATATTCTCACTGCTTGCTTGAAGTTGGGGGTATTTGCATCGTCACTTTGCAGTATTTGCATTTGTTGAATCTTATCTCTTTGCTGTATGTTCTGTTCTGATATTGACTTTTCCAGTTTTCACATCCAATGTTTTAAAAGGTTATTGAGGTTTACGTCTTGAGGGTCGCCTCAGGGCAAGACTCTAACTTTTAGCTGTGAGAATTGTGGCTTCTTTGAACCACAAGAGGTTTATGCCATTTTGTTATAATGCATCAAGGCTTAAAAGTATCTATGACCCATATAACGATTAGAATAATAATATTAATTTGCCTCATTCTTCAAAATTATAAAACTTCGTGTTCTGAAAATAGGAACTATTACTACTTTTTCTACCGTGACTTTCAAAGTAATTATAATATTAGTCAATCCTTTAAATGATAATAGTAGAGAAGTTAAAGATATCTCTTTTAGATTTTTTTTGTTCAAGCGGCAGTTAATAGGGGTGGTTTTTTATTTTTTATTTTATTTATTTTTCTCTTTTATGATCATTATGTTTAGCAACACCTGGTCAAACTAACTTAGGAGTTATTAAATGTCTTTAGTTAAATTCGAAGCTTACGCCTTATGCTGGTTTAAGCCTGTGTTGTGCCTTTATGAGGAAAAGCCACAAGGGCGCTTTTTTCCTTTGTTAATTTCCATATTATTTTGCACATATGAAGATTGTTTAAACTGTTTTGATTTAAGGGCTTTGCTATAACTTCATCTTGAATTATTTTGGAGTGTTGTTTCCATAATTCAACGACGTGCCTCCATCTATTTCGGGAAGAGATTGACGATTGTACGTTGTCACATTTATAGGATTTATTTTGATTTTTATTTATTGTTGATCACTGTTGATGCATTATTGATGTTCAATAGTAACAGATAACGAGTCTGGAATTACATGTCTTGGTTGTAAAAACATTAGGCTGTTCATATATGCTCAAATCATGAAACTTAAAGCCTATGACTTGACCGCTAAGTTGTTTTCTCGATGCCCTTTACCTACAGCAACTGGTCCTAGTTGTTGCTTCTCCATTTTTCAATGAATAACCACACTATTATTGGTTGTTTTGATATACTTAATGGAAGCTTCTTTGTCATTTCTACATTTCTTCTTTTTCTCTTTTCAAGCAATGCCTTTTCTTTATTTGAATGGGACTTCAATGGACTTCAATTGCATATTTCTAATTTTGTGATTGTTTTCTTTTCAATGAATAACCACACTTACCTAAAAGAAATGCCTCAAGCCAAGCAAAATAAAACTTAGGGAATGTTTGCATAAAGGTTCCGTAATCTGAAGCCAACAAATTGAAATGTAATCTAGCAAGAGACCAAACATTAGAAGAACTAATTGCGTAGTTCTAATTTTGTGGTTTATACCTTATAGCATGATGGATGACAACTGTTGCTGTGTTTATGATTGCTTACTATGTGTTTATGATTGCTTACTATTAATGTATGGCATAACACTTTGGACTAATAGGTGGAAAATTCGAGGTTGGTGAATTTTTTTTTTTTTATTTGTTCTTTCTGAAGGTATACTTCTTTTTCTCTTTCGAAGGCAACATCTTTTCTTGCTGCAGATGGCTTTCCTAGATTGGAGATTTTAAATAAATGGTTAAAAAGAAAGACTTGGGAATAAACCTGCTCTGTTTTTGCAACGTTCAGGGGATTTCAATATATTTATGGAATGGGAATCATACCCCATTTTTTACTTCGATACTTCTCCCTTATAAATTCTGTTCTTGTTTGCTTTATATAACTTGGGTTACTACTCGTGCTCGAAATCTTATTAGTTCTTATAAACATGGAATCTGGATTTGATATAGGCTTTGGACTGTCAGATAGCAGATGCATACCTTGCTCTGGAGTTTCAGGACGAGCAGCCTCGTTCTCTTTTCACTCTTTATGTGCTGAACATAGAATCAATGTACCAGTCAAATTTAGACCTCTAAACTGTACTTCGTTGGGGGAGTCTTTTACGTGCAAAGCCAGCTCAGGAGGTCACAGGAGAAACCCAGATTTTCCAAAGCAAAATAGGCATGGCTTCTCAAGAAGCAGAAATAGGCAAAATGAGGAGAGAGAGAGTCTTGACAATGTTGATGAATCTGATTTATTATTGTCTAAGAATGGACCATTACTTTCCATCTCTAGCACCCCAAAATCCCAGGCCACCGCTACCCCAGGACCAAGGGAAAAGGAAATTGTTGAACTTTTCAGAAAGGTTCAAGCTCAGCTTCGGGAGCGAGCAGCAATGAAAGAAGAGAAGAAAGTGGAAGCTCAAGGACAAACGAAAGGGAGTGAGACAGTAGATTCTCTTCTTAAGCTATTGCGAAAGCATTCCGTGGAACAAGGGAAGAGAAGCAGTGGTGGGGGTGGCAGCAGCAACAAGGACATCAGTTTTAACCATGTCAAAGAGAATGGTCCTTACGATGAAGGAAGAGGCTCAAGCTTTTTTGGACTAAGTCCCAATTTGAGGGAGAAGGCCCAAAGACCCGTATCAAATTTCCAACGTAGATCCCCCGTGCCTCGGGTGAAGTACCAACCAATTTACCCTGGGGAAAGTATTGTCAACTCGACCAATGGTATGAATTCAAAAGGTGTGAAACCTAATGGAACTGATACAGGTTCTCAACTGAAAGGAAAGGTATGGACTCGGCAAGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAAGGGAGGCAGAACAGGAGCCAGAGCCGGACCAAGAGTTCGAATTGGAACCAGAGGCTGAAACATATGATCTAGAGCATGAAGGTGATGAAATGGAGCCTGAACTTGTTAATTTATTAGGTGTGTCATCAGACGTCGATGACACGTTTGAGGATGATGTTAAAGACAATGAGGAATTTGCAAAGCATGGTGAACAAGAACATGAGGACTTGAACTCATTGAAACTTGCTGAACTGAGGGCGATTGCCAAATCTCGTAGTTTGAGAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCAATTGTTAAGCAACGGTCAGTAAGGATGTCATACTGGACAGGAACCTCTGGATTTAGGTTGTTTAGGTGTTTTTTTGTACTTATTTTTGTTGTGCTTATCAATCTGTTTGACTAGTTTTGAGTTAGAAATTGGTATTAGCTTTTTACAAACTCTTTCCCAGATTGTATATCAGGCTAATCTTCGCAGGTTCAGAGTACAAGTCAACAACAATCTCTTCTTTTAGTTTTTTCTCTTCTATTCAGACTCTTGTTCACTTATAGGAACCATTTTTTAAAGGGATTTTTATTGCTAACATGGTCCTCAAGCGTTTCCATCATGTTGCTCAGTGGGTGGGATTGATTTGAAAGGTTTGGAAGAATGATTGCTGTTTTTATGTGTTTGGTAAAAGAAAT

mRNA sequence

GAAATTCTTCAAAGAAATGCAAATAAAAAACCCTTCCTTTCCTCACTAAAACCTTTCCTTCCTTCCAGGTGTCTTAACCAGCAATGTCTCAAGCCATTCATCTTCTTCCTCACAACCCTACAGGCTTTGGACTGTCAGATAGCAGATGCATACCTTGCTCTGGAGTTTCAGGACGAGCAGCCTCGTTCTCTTTTCACTCTTTATGTGCTGAACATAGAATCAATGTACCAGTCAAATTTAGACCTCTAAACTGTACTTCGTTGGGGGAGTCTTTTACGTGCAAAGCCAGCTCAGGAGGTCACAGGAGAAACCCAGATTTTCCAAAGCAAAATAGGCATGGCTTCTCAAGAAGCAGAAATAGGCAAAATGAGGAGAGAGAGAGTCTTGACAATGTTGATGAATCTGATTTATTATTGTCTAAGAATGGACCATTACTTTCCATCTCTAGCACCCCAAAATCCCAGGCCACCGCTACCCCAGGACCAAGGGAAAAGGAAATTGTTGAACTTTTCAGAAAGGTTCAAGCTCAGCTTCGGGAGCGAGCAGCAATGAAAGAAGAGAAGAAAGTGGAAGCTCAAGGACAAACGAAAGGGAGTGAGACAGTAGATTCTCTTCTTAAGCTATTGCGAAAGCATTCCGTGGAACAAGGGAAGAGAAGCAGTGGTGGGGGTGGCAGCAGCAACAAGGACATCAGTTTTAACCATGTCAAAGAGAATGGTCCTTACGATGAAGGAAGAGGCTCAAGCTTTTTTGGACTAAGTCCCAATTTGAGGGAGAAGGCCCAAAGACCCGTATCAAATTTCCAACGTAGATCCCCCGTGCCTCGGGTGAAGTACCAACCAATTTACCCTGGGGAAAGTATTGTCAACTCGACCAATGGTATGAATTCAAAAGGTGTGAAACCTAATGGAACTGATACAGGTTCTCAACTGAAAGGAAAGGTATGGACTCGGCAAGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAAGGGAGGCAGAACAGGAGCCAGAGCCGGACCAAGAGTTCGAATTGGAACCAGAGGCTGAAACATATGATCTAGAGCATGAAGGTGATGAAATGGAGCCTGAACTTGTTAATTTATTAGGTGTGTCATCAGACGTCGATGACACGTTTGAGGATGATGTTAAAGACAATGAGGAATTTGCAAAGCATGGTGAACAAGAACATGAGGACTTGAACTCATTGAAACTTGCTGAACTGAGGGCGATTGCCAAATCTCGTAGTTTGAGAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCAATTGTTAAGCAACGGTCAGTAAGGATGTCATACTGGACAGGAACCTCTGGATTTAGGTTGTTTAGGTGTTTTTTTGTACTTATTTTTGTTGTGCTTATCAATCTGTTTGACTAGTTTTGAGTTAGAAATTGGTATTAGCTTTTTACAAACTCTTTCCCAGATTGTATATCAGGCTAATCTTCGCAGGTTCAGAGTACAAGTCAACAACAATCTCTTCTTTTAGTTTTTTCTCTTCTATTCAGACTCTTGTTCACTTATAGGAACCATTTTTTAAAGGGATTTTTATTGCTAACATGGTCCTCAAGCGTTTCCATCATGTTGCTCAGTGGGTGGGATTGATTTGAAAGGTTTGGAAGAATGATTGCTGTTTTTATGTGTTTGGTAAAAGAAAT

Coding sequence (CDS)

ATGTCTCAAGCCATTCATCTTCTTCCTCACAACCCTACAGGCTTTGGACTGTCAGATAGCAGATGCATACCTTGCTCTGGAGTTTCAGGACGAGCAGCCTCGTTCTCTTTTCACTCTTTATGTGCTGAACATAGAATCAATGTACCAGTCAAATTTAGACCTCTAAACTGTACTTCGTTGGGGGAGTCTTTTACGTGCAAAGCCAGCTCAGGAGGTCACAGGAGAAACCCAGATTTTCCAAAGCAAAATAGGCATGGCTTCTCAAGAAGCAGAAATAGGCAAAATGAGGAGAGAGAGAGTCTTGACAATGTTGATGAATCTGATTTATTATTGTCTAAGAATGGACCATTACTTTCCATCTCTAGCACCCCAAAATCCCAGGCCACCGCTACCCCAGGACCAAGGGAAAAGGAAATTGTTGAACTTTTCAGAAAGGTTCAAGCTCAGCTTCGGGAGCGAGCAGCAATGAAAGAAGAGAAGAAAGTGGAAGCTCAAGGACAAACGAAAGGGAGTGAGACAGTAGATTCTCTTCTTAAGCTATTGCGAAAGCATTCCGTGGAACAAGGGAAGAGAAGCAGTGGTGGGGGTGGCAGCAGCAACAAGGACATCAGTTTTAACCATGTCAAAGAGAATGGTCCTTACGATGAAGGAAGAGGCTCAAGCTTTTTTGGACTAAGTCCCAATTTGAGGGAGAAGGCCCAAAGACCCGTATCAAATTTCCAACGTAGATCCCCCGTGCCTCGGGTGAAGTACCAACCAATTTACCCTGGGGAAAGTATTGTCAACTCGACCAATGGTATGAATTCAAAAGGTGTGAAACCTAATGGAACTGATACAGGTTCTCAACTGAAAGGAAAGGTATGGACTCGGCAAGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAAGGGAGGCAGAACAGGAGCCAGAGCCGGACCAAGAGTTCGAATTGGAACCAGAGGCTGAAACATATGATCTAGAGCATGAAGGTGATGAAATGGAGCCTGAACTTGTTAATTTATTAGGTGTGTCATCAGACGTCGATGACACGTTTGAGGATGATGTTAAAGACAATGAGGAATTTGCAAAGCATGGTGAACAAGAACATGAGGACTTGAACTCATTGAAACTTGCTGAACTGAGGGCGATTGCCAAATCTCGTAGTTTGAGAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCAATTGTTAAGCAACGGTCAGTAA

Protein sequence

MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEREHWEELQSQREAEQEPEPDQEFELEPEAETYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ

Homology

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BLAST of CsGy3G021560 vs. NCBI nr
Match: XP_004151986.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KGN57903.1 hypothetical protein Csa_3G384780 [Cucumis sativus])

HSP 1 Score: 723.8 bits (1867), Expect = 3.3e-205
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL
Sbjct: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
           GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180
           SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180

Query: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF 240
           LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF
Sbjct: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF 240

Query: 241 QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX 300
           QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX
Sbjct: 241 QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN 360
           XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN 360

Query: 361 EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 411
           EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ
Sbjct: 361 EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 410

[Close]

BLAST of CsGy3G021560 vs. NCBI nr
Match: XP_004151987.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 707.6 bits (1825), Expect = 2.5e-200
Identity = 405/410 (98.78%), Postives = 405/410 (98.78%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MSQAIHLLPHNPT     DSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL
Sbjct: 1   MSQAIHLLPHNPT-----DSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
           GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180
           SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180

Query: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF 240
           LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF
Sbjct: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF 240

Query: 241 QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX 300
           QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX
Sbjct: 241 QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN 360
           XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN 360

Query: 361 EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 411
           EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ
Sbjct: 361 EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 405

[Close]

BLAST of CsGy3G021560 vs. NCBI nr
Match: XP_008447421.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 640.2 bits (1650), Expect = 4.8e-180
Identity = 376/415 (90.60%), Postives = 389/415 (93.73%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MSQAIHLLP NPTGFGLSDSRC+PCSGVSGRAASFSF SLCAEH INVPVKFRPLNCTSL
Sbjct: 1   MSQAIHLLPRNPTGFGLSDSRCLPCSGVSGRAASFSFRSLCAEHGINVPVKFRPLNCTSL 60

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
           G SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERESL+NVDESDLL S+NGPLLSI
Sbjct: 61  GVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERESLENVDESDLLSSRNGPLLSI 120

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180
           SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKK+EAQGQTKGSETVDSLLKL
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQGQTKGSETVDSLLKL 180

Query: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ------ 240
           LRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGSS FGLSPNLREKAQ      
Sbjct: 181 LRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGSSIFGLSPNLREKAQEPAGSF 240

Query: 241 -RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQES 300
            RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K NGT+TGSQLK KVWTRQE 
Sbjct: 241 RRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTETGSQLKAKVWTRQEX 300

Query: 301 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTF 360
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE DEMEPELVNLLGVSSD+DDTF
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEADEMEPELVNLLGVSSDIDDTF 360

Query: 361 EDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN 409
           EDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN
Sbjct: 361 EDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN 411

[Close]

BLAST of CsGy3G021560 vs. NCBI nr
Match: XP_016900425.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 630.6 bits (1625), Expect = 3.8e-177
Identity = 376/429 (87.65%), Postives = 389/429 (90.68%), Query Frame = 0


Query: 1   MSQAIHLLPHNPT--------------GFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRI 60
           MSQAIHLLP NPT              GFGLSDSRC+PCSGVSGRAASFSF SLCAEH I
Sbjct: 1   MSQAIHLLPRNPTGGKFEVGEVFFFVEGFGLSDSRCLPCSGVSGRAASFSFRSLCAEHGI 60

Query: 61  NVPVKFRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDE 120
           NVPVKFRPLNCTSLG SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERESL+NVDE
Sbjct: 61  NVPVKFRPLNCTSLGVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERESLENVDE 120

Query: 121 SDLLLSKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQG 180
           SDLL S+NGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKK+EAQG
Sbjct: 121 SDLLSSRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQG 180

Query: 181 QTKGSETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLS 240
           QTKGSETVDSLLKLLRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGSS FGLS
Sbjct: 181 QTKGSETVDSLLKLLRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGSSIFGLS 240

Query: 241 PNLREKAQ-------RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDT 300
           PNLREKAQ       RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K NGT+T
Sbjct: 241 PNLREKAQEPAGSFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTET 300

Query: 301 GSQLKGKVWTRQESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPEL 360
           GSQLK KVWTRQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE DEMEPEL
Sbjct: 301 GSQLKAKVWTRQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEADEMEPEL 360

Query: 361 VNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKK 409
           VNLLGVSSD+DDTFEDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRGFSKMKK
Sbjct: 361 VNLLGVSSDIDDTFEDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRGFSKMKK 420

[Close]

BLAST of CsGy3G021560 vs. NCBI nr
Match: XP_016900423.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 628.2 bits (1619), Expect = 1.9e-176
Identity = 376/435 (86.44%), Postives = 389/435 (89.43%), Query Frame = 0


Query: 1   MSQAIHLLPHNPT--------------------GFGLSDSRCIPCSGVSGRAASFSFHSL 60
           MSQAIHLLP NPT                    GFGLSDSRC+PCSGVSGRAASFSF SL
Sbjct: 1   MSQAIHLLPRNPTVHFGMIGGKFEVGEVFFFVEGFGLSDSRCLPCSGVSGRAASFSFRSL 60

Query: 61  CAEHRINVPVKFRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERES 120
           CAEH INVPVKFRPLNCTSLG SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERES
Sbjct: 61  CAEHGINVPVKFRPLNCTSLGVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERES 120

Query: 121 LDNVDESDLLLSKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEK 180
           L+NVDESDLL S+NGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEK
Sbjct: 121 LENVDESDLLSSRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEK 180

Query: 181 KVEAQGQTKGSETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGS 240
           K+EAQGQTKGSETVDSLLKLLRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGS
Sbjct: 181 KMEAQGQTKGSETVDSLLKLLRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGS 240

Query: 241 SFFGLSPNLREKAQ-------RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVK 300
           S FGLSPNLREKAQ       RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K
Sbjct: 241 SIFGLSPNLREKAQEPAGSFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMK 300

Query: 301 PNGTDTGSQLKGKVWTRQESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGD 360
            NGT+TGSQLK KVWTRQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE D
Sbjct: 301 LNGTETGSQLKAKVWTRQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEAD 360

Query: 361 EMEPELVNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRG 409
           EMEPELVNLLGVSSD+DDTFEDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRG
Sbjct: 361 EMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRG 420

[Close]

BLAST of CsGy3G021560 vs. TAIR10
Match: AT1G06190.1 (Rho termination factor)

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-49
Identity = 181/417 (43.41%), Postives = 227/417 (54.44%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MS   HL      G+ LSDSRC   S VS R  +    S C +H+ N  +K  P      
Sbjct: 3   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDHK-NGRLKSVPNR---- 62

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
             SF C+ASSGG+RRNPDF + N+HG+ R  NRQ+  RE  D ++ SD+L S+NGPL ++
Sbjct: 63  -SSFVCRASSGGYRRNPDFSRLNKHGY-RGNNRQSGGREDFD-IENSDMLSSRNGPLFNL 122

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRER-AAMKEEKKVE--AQGQTKGSETVDSL 180
           SS+PK QAT++PGPREKEIVELFRKVQAQLR R AA KEEKK+E  ++GQ K SETVDSL
Sbjct: 123 SSSPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSL 182

Query: 181 LKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPV 240
           LKLLRKHS EQ KR      SS  ++  + V +    D        G   N      RP 
Sbjct: 183 LKLLRKHSGEQSKRQV-SKFSSQGEVQGDTVDKQ---DRTGNLVTSGNKDNNASSFTRPT 242

Query: 241 SNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXX 300
           S+F+R+SPVPR +  P Y  E+  + ++  +          T +Q K  V    E  XXX
Sbjct: 243 SSFRRKSPVPRSQSPPAYSSEATFDQSSSYSV---------TWTQKKDTVELHDEXXXXX 302

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVS------SDVDD 360
           XXXXXXXXXXXXXXXX             +            V    +S           
Sbjct: 303 XXXXXXXXXXXXXXXXVTTMLEPDSELKPESSXXXXXXXXXXVTFDVLSXXXXXXXXXXX 362

Query: 361 TFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN 409
                            +  +DL+ LKL ELR IAKSR L+G SKMKK+ELV+LL +
Sbjct: 363 XXXXXXXXXXXXXXXXXEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

[Close]

BLAST of CsGy3G021560 vs. TAIR10
Match: AT2G31150.1 (ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-18
Identity = 85/202 (42.08%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 73  HRR-NPDFPKQNRHGFSRSRNRQNEERESL-DNVDESDLLLSKNGPLLSISSTPKSQATA 132
           HRR NPDF + N+HGF R RNR+NE+++ L D   E D+L SKN                
Sbjct: 26  HRRNNPDFSRNNKHGF-RGRNRRNEDKDGLVDGGLEDDMLSSKN---------------- 85

Query: 133 TPGPREKEIVELFRKVQAQLRERA---AMKEEKKVEAQGQ-TKGSETVDSLLKLLRKHSV 192
                EKEIVELF+KVQ QLR RA            ++GQ  K SETVDSLLKLLRKHS 
Sbjct: 86  -----EKEIVELFKKVQVQLRARAXXXXXXXXXXXXSKGQGGKESETVDSLLKLLRKHSG 145

Query: 193 EQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKA---QRPVSNFQRR 252
           EQ K+      S  +    +   E     +   SS F  S N    A    RP S+F+R 
Sbjct: 146 EQSKKQVSNFNSEKQLQRDDDASER----QNHSSSRFD-SRNKDHNATPFTRPASSFKRN 200

Query: 253 SPVPRVKYQPIYPGESIVNSTN 266
           SPVPR K Q  Y  E+I +  +
Sbjct: 206 SPVPRHKSQASYSSEAIFDEAS 200

[Close]

BLAST of CsGy3G021560 vs. Swiss-Prot
Match: sp|Q94K75|RHON1_ARATH (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RHON1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-48
Identity = 181/417 (43.41%), Postives = 227/417 (54.44%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MS   HL      G+ LSDSRC   S VS R  +    S C +H+ N  +K  P      
Sbjct: 3   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDHK-NGRLKSVPNR---- 62

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
             SF C+ASSGG+RRNPDF + N+HG+ R  NRQ+  RE  D ++ SD+L S+NGPL ++
Sbjct: 63  -SSFVCRASSGGYRRNPDFSRLNKHGY-RGNNRQSGGREDFD-IENSDMLSSRNGPLFNL 122

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRER-AAMKEEKKVE--AQGQTKGSETVDSL 180
           SS+PK QAT++PGPREKEIVELFRKVQAQLR R AA KEEKK+E  ++GQ K SETVDSL
Sbjct: 123 SSSPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSL 182

Query: 181 LKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPV 240
           LKLLRKHS EQ KR      SS  ++  + V +    D        G   N      RP 
Sbjct: 183 LKLLRKHSGEQSKRQV-SKFSSQGEVQGDTVDKQ---DRTGNLVTSGNKDNNASSFTRPT 242

Query: 241 SNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXX 300
           S+F+R+SPVPR +  P Y  E+  + ++  +          T +Q K  V    E  XXX
Sbjct: 243 SSFRRKSPVPRSQSPPAYSSEATFDQSSSYSV---------TWTQKKDTVELHDEXXXXX 302

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVS------SDVDD 360
           XXXXXXXXXXXXXXXX             +            V    +S           
Sbjct: 303 XXXXXXXXXXXXXXXXVTTMLEPDSELKPESSXXXXXXXXXXVTFDVLSXXXXXXXXXXX 362

Query: 361 TFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN 409
                            +  +DL+ LKL ELR IAKSR L+G SKMKK+ELV+LL +
Sbjct: 363 XXXXXXXXXXXXXXXXXEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

[Close]

BLAST of CsGy3G021560 vs. Swiss-Prot
Match: sp|Q8L4E7|BP73_ORYSJ (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-26
Identity = 147/362 (40.61%), Postives = 206/362 (56.91%), Query Frame = 0


Query: 63  SFTCKASSGGHR-RNPDFPKQNRHGFSRSRNRQNEERESLDNVDE--SDLLLSKNGPLLS 122
           S  C A+   HR R+ D  +  + G +R +++  +E++  +N+DE  +D++ SKNGP +S
Sbjct: 39  SLVCSANPNNHRSRSSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPIS 98

Query: 123 ISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSE-TVDSLL 182
           ++S  + QAT+ PG REKEIVELF++VQAQLR R   KEEKK E Q + +G   +VDSLL
Sbjct: 99  LTSNSRPQATSVPGEREKEIVELFKRVQAQLRARGKGKEEKKPE-QAKAQGERGSVDSLL 158

Query: 183 KLLRKHSVEQGKRSSGGGGSSNKDISFNHVK----------ENGPYDEGRGSSFFGLSPN 242
            LLRKHSV+Q ++                            +N   +E +        P+
Sbjct: 159 NLLRKHSVDQRRKXXXXXXXXXXXXXXXXXXXXXXXXXIFIKNDTQEEQK-------KPH 218

Query: 243 LREKAQRPVSNFQRRSPVPRVKYQ--PIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGK 302
                +RP SNF+RRSPVP VK+Q       E ++N+ N    +  KP        L+ K
Sbjct: 219 -PAAFKRPASNFRRRSPVPNVKFQXXXXVDAERVINNINDAVQE-AKPT-------LENK 278

Query: 303 VWTRQESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVS 362
             T +   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          EP L   +   
Sbjct: 279 AATDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEPSL--QIPSV 338

Query: 363 SDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLL 409
             +D++ +  +K +            DL++LK+ ELR +AKSR ++G+SKMKK++LV+LL
Sbjct: 339 PIIDESHDTTLKSS--------LGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELL 373

[Close]

BLAST of CsGy3G021560 vs. TrEMBL
Match: tr|A0A0A0L7X8|A0A0A0L7X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G384780 PE=4 SV=1)

HSP 1 Score: 723.8 bits (1867), Expect = 2.2e-205
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL
Sbjct: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
           GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180
           SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180

Query: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF 240
           LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF
Sbjct: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNF 240

Query: 241 QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX 300
           QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX
Sbjct: 241 QRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN 360
           XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDN 360

Query: 361 EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 411
           EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ
Sbjct: 361 EEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 410

[Close]

BLAST of CsGy3G021560 vs. TrEMBL
Match: tr|A0A1S3BHF2|A0A1S3BHF2_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X7 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1)

HSP 1 Score: 640.2 bits (1650), Expect = 3.2e-180
Identity = 376/415 (90.60%), Postives = 389/415 (93.73%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60
           MSQAIHLLP NPTGFGLSDSRC+PCSGVSGRAASFSF SLCAEH INVPVKFRPLNCTSL
Sbjct: 1   MSQAIHLLPRNPTGFGLSDSRCLPCSGVSGRAASFSFRSLCAEHGINVPVKFRPLNCTSL 60

Query: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120
           G SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERESL+NVDESDLL S+NGPLLSI
Sbjct: 61  GVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERESLENVDESDLLSSRNGPLLSI 120

Query: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180
           SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKK+EAQGQTKGSETVDSLLKL
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQGQTKGSETVDSLLKL 180

Query: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ------ 240
           LRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGSS FGLSPNLREKAQ      
Sbjct: 181 LRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGSSIFGLSPNLREKAQEPAGSF 240

Query: 241 -RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQES 300
            RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K NGT+TGSQLK KVWTRQE 
Sbjct: 241 RRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTETGSQLKAKVWTRQEX 300

Query: 301 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLGVSSDVDDTF 360
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE DEMEPELVNLLGVSSD+DDTF
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEADEMEPELVNLLGVSSDIDDTF 360

Query: 361 EDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN 409
           EDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN
Sbjct: 361 EDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSN 411

[Close]

BLAST of CsGy3G021560 vs. TrEMBL
Match: tr|A0A1S4DXI1|A0A1S4DXI1_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X4 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 2.5e-177
Identity = 376/429 (87.65%), Postives = 389/429 (90.68%), Query Frame = 0


Query: 1   MSQAIHLLPHNPT--------------GFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRI 60
           MSQAIHLLP NPT              GFGLSDSRC+PCSGVSGRAASFSF SLCAEH I
Sbjct: 1   MSQAIHLLPRNPTGGKFEVGEVFFFVEGFGLSDSRCLPCSGVSGRAASFSFRSLCAEHGI 60

Query: 61  NVPVKFRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDE 120
           NVPVKFRPLNCTSLG SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERESL+NVDE
Sbjct: 61  NVPVKFRPLNCTSLGVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERESLENVDE 120

Query: 121 SDLLLSKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQG 180
           SDLL S+NGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKK+EAQG
Sbjct: 121 SDLLSSRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQG 180

Query: 181 QTKGSETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLS 240
           QTKGSETVDSLLKLLRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGSS FGLS
Sbjct: 181 QTKGSETVDSLLKLLRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGSSIFGLS 240

Query: 241 PNLREKAQ-------RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDT 300
           PNLREKAQ       RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K NGT+T
Sbjct: 241 PNLREKAQEPAGSFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTET 300

Query: 301 GSQLKGKVWTRQESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPEL 360
           GSQLK KVWTRQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE DEMEPEL
Sbjct: 301 GSQLKAKVWTRQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEADEMEPEL 360

Query: 361 VNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKK 409
           VNLLGVSSD+DDTFEDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRGFSKMKK
Sbjct: 361 VNLLGVSSDIDDTFEDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRGFSKMKK 420

[Close]

BLAST of CsGy3G021560 vs. TrEMBL
Match: tr|A0A1S4DWS1|A0A1S4DWS1_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 1.3e-176
Identity = 376/435 (86.44%), Postives = 389/435 (89.43%), Query Frame = 0


Query: 1   MSQAIHLLPHNPT--------------------GFGLSDSRCIPCSGVSGRAASFSFHSL 60
           MSQAIHLLP NPT                    GFGLSDSRC+PCSGVSGRAASFSF SL
Sbjct: 1   MSQAIHLLPRNPTVHFGMIGGKFEVGEVFFFVEGFGLSDSRCLPCSGVSGRAASFSFRSL 60

Query: 61  CAEHRINVPVKFRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERES 120
           CAEH INVPVKFRPLNCTSLG SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERES
Sbjct: 61  CAEHGINVPVKFRPLNCTSLGVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERES 120

Query: 121 LDNVDESDLLLSKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEK 180
           L+NVDESDLL S+NGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEK
Sbjct: 121 LENVDESDLLSSRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEK 180

Query: 181 KVEAQGQTKGSETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGS 240
           K+EAQGQTKGSETVDSLLKLLRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGS
Sbjct: 181 KMEAQGQTKGSETVDSLLKLLRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGS 240

Query: 241 SFFGLSPNLREKAQ-------RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVK 300
           S FGLSPNLREKAQ       RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K
Sbjct: 241 SIFGLSPNLREKAQEPAGSFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMK 300

Query: 301 PNGTDTGSQLKGKVWTRQESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGD 360
            NGT+TGSQLK KVWTRQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE D
Sbjct: 301 LNGTETGSQLKAKVWTRQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEAD 360

Query: 361 EMEPELVNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRG 409
           EMEPELVNLLGVSSD+DDTFEDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRG
Sbjct: 361 EMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRG 420

[Close]

BLAST of CsGy3G021560 vs. TrEMBL
Match: tr|A0A1S3BIA8|A0A1S3BIA8_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X6 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 4.8e-176
Identity = 373/424 (87.97%), Postives = 387/424 (91.27%), Query Frame = 0


Query: 1   MSQAIHLLPHNPTG---------FGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVK 60
           MSQAIHLLP NPTG         F + DSRC+PCSGVSGRAASFSF SLCAEH INVPVK
Sbjct: 1   MSQAIHLLPRNPTGGKFEVGEVFFFVEDSRCLPCSGVSGRAASFSFRSLCAEHGINVPVK 60

Query: 61  FRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLL 120
           FRPLNCTSLG SFTCKASS GHRRNPDFPKQNR G+SRSRNRQNEERESL+NVDESDLL 
Sbjct: 61  FRPLNCTSLGVSFTCKASS-GHRRNPDFPKQNRQGYSRSRNRQNEERESLENVDESDLLS 120

Query: 121 SKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGS 180
           S+NGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKK+EAQGQTKGS
Sbjct: 121 SRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQGQTKGS 180

Query: 181 ETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLRE 240
           ETVDSLLKLLRKH+VEQGKRSSG GG SNKDISFNHVKENGPYDEGRGSS FGLSPNLRE
Sbjct: 181 ETVDSLLKLLRKHAVEQGKRSSGAGG-SNKDISFNHVKENGPYDEGRGSSIFGLSPNLRE 240

Query: 241 KAQ-------RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLK 300
           KAQ       RP SNFQRRSPVPRVKYQPIYPGESIV+STNGMNSKG+K NGT+TGSQLK
Sbjct: 241 KAQEPAGSFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTETGSQLK 300

Query: 301 GKVWTRQESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDLEHEGDEMEPELVNLLG 360
            KVWTRQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDLEHE DEMEPELVNLLG
Sbjct: 301 AKVWTRQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDLEHEADEMEPELVNLLG 360

Query: 361 VSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQ 409
           VSSD+DDTFEDD+KDNEEF+KHG  EHE+LNSLKLAELRAIAKSRSLRGFSKMKKSELVQ
Sbjct: 361 VSSDIDDTFEDDIKDNEEFSKHG--EHENLNSLKLAELRAIAKSRSLRGFSKMKKSELVQ 420

The following BLAST results are available for this feature:

BLAST of CsGy3G021560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151986.1	3.3e-205	100.00	PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis ...	[more]
XP_004151987.1	2.5e-200	98.78	PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X2 [Cucumis ...	[more]
XP_008447421.1	4.8e-180	90.60	PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X7 [Cucumis ...	[more]
XP_016900425.1	3.8e-177	87.65	PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis ...	[more]
XP_016900423.1	1.9e-176	86.44	PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis ...	[more]

BLAST of CsGy3G021560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06190.1	4.8e-49	43.41	Rho termination factor	[more]
AT2G31150.1	3.4e-18	42.08	ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative ...	[more]

BLAST of CsGy3G021560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94K75\|RHON1_ARATH	8.7e-48	43.41	Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q8L4E7\|BP73_ORYSJ	1.9e-26	40.61	SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV...	[more]

BLAST of CsGy3G021560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7X8\|A0A0A0L7X8_CUCSA	2.2e-205	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G384780 PE=4 SV=1	[more]
tr\|A0A1S3BHF2\|A0A1S3BHF2_CUCME	3.2e-180	90.60	rho-N domain-containing protein 1, chloroplastic isoform X7 OS=Cucumis melo OX=3...	[more]
tr\|A0A1S4DXI1\|A0A1S4DXI1_CUCME	2.5e-177	87.65	rho-N domain-containing protein 1, chloroplastic isoform X4 OS=Cucumis melo OX=3...	[more]
tr\|A0A1S4DWS1\|A0A1S4DWS1_CUCME	1.3e-176	86.44	rho-N domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3...	[more]
tr\|A0A1S3BIA8\|A0A1S3BIA8_CUCME	4.8e-176	87.97	rho-N domain-containing protein 1, chloroplastic isoform X6 OS=Cucumis melo OX=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006353	DNA-templated transcription, termination

Vocabulary: **INTERPRO**
Term	Definition
IPR011112	Rho_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021560.1	CsGy3G021560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..206
None	No IPR available	PANTHER	PTHR34449:SF2	ATP BINDING / ATPASE-RELATED	coord: 1..408
None	No IPR available	PANTHER	PTHR34449	FAMILY NOT NAMED	coord: 1..408
IPR011112	Rho termination factor, N-terminal	SMART	SM00959	Rho_N_2_a	coord: 373..410 e-value: 6.1E-4 score: 29.1
IPR011112	Rho termination factor, N-terminal	PFAM	PF07498	Rho_N	coord: 373..403 e-value: 8.4E-7 score: 28.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G021560	Cla005974	Watermelon (97103) v1	cgybwmB206
CsGy3G021560	Csa3G384780	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021560	MELO3C012881	Melon (DHL92) v3.5.1	cgybmeB176
CsGy3G021560	ClCG07G001090	Watermelon (Charleston Gray)	cgybwcgB239
CsGy3G021560	CSPI03G22490	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G021560	CmaCh19G000920	Cucurbita maxima (Rimu)	cgybcmaB383
CsGy3G021560	CmoCh19G001040	Cucurbita moschata (Rifu)	cgybcmoB355
CsGy3G021560	Lsi05G010220	Bottle gourd (USVL1VR-Ls)	cgyblsiB202
CsGy3G021560	Cp4.1LG15g00810	Cucurbita pepo (Zucchini)	cgybcpeB338
CsGy3G021560	MELO3C012881.2	Melon (DHL92) v3.6.1	cgybmedB177
CsGy3G021560	CsaV3_3G022220	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021560	Cla97C07G129370	Watermelon (97103) v2	cgybwmbB232
CsGy3G021560	Bhi05G000147	Wax gourd	cgybwgoB294
CsGy3G021560	Carg16880	Silver-seed gourd	carcgybB0747

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021560	Silver-seed gourd	carcgybB0771
CsGy3G021560	Cucurbita maxima (Rimu)	cgybcmaB392
CsGy3G021560	Cucurbita moschata (Rifu)	cgybcmoB363
CsGy3G021560	Cucurbita pepo (Zucchini)	cgybcpeB433
CsGy3G021560	Bottle gourd (USVL1VR-Ls)	cgyblsiB212