CmoCh19G001040 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G001040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSAP-like protein BP-73
LocationCmo_Chr19 : 592063 .. 596655 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTATCGGTGATATTCCCAAACACAGGCCAGTAGGGCAAAGAAGAACATAGCGGAAGGCGAAAATCCTCAAAAGAAATGCAAATCTAAAACCCTTTTTCCCCCAACTAAAACCTTTCCTTCGAGCTGTTCAAACCAGCAATGTCTCAACTCCCTCATCTTCTTCCTAACAACGCTACAGGTTTCTGTTCTTGATATCAACAAATTCGTTGTTGGGTACTCTTTAATTTTGTGCTTTGTTTGCTTGGAAGCTTGGAAATTAAATATTATCTTGTTTACATTTACTGGGTGTCTTTGATTTTCTTCTAGTTTTATGGGTTTTGTGCTGTCTGAGGACCCTGAGCTTCTTGAATTTTGAATTTCTATTTGGGAAGGGTTTTGTGGTTCTTGATTTTGTCTATGTTTTGTTGTTCTTTCCTTTCCCATGTGGAAATTATGGAGAAATTGACTGTTGCGCAACAAGTTTAAGTTCAGTTTTAGAGTACTTAATACCACTTTCCATTGCTTGAAAATTCTCTGCTTAGTTGGATGATGTGAGATCCCACGTCGATTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCACTAGCGGAAGCATTTTAAAAACCTTAAGGGGAAGCCTGGAAGAGAATGCTCGAAGAGGACAATATTTGCTAGCTGTAGGCTTAGGCTGTTACGAATGGTATCAGGGCTAGACACTGGATGATGTGTCGGTGAGGAGGCTGAGGCCCGAAGAGAGATGGACATGAGACGATGTGCCAGCAATGACGCTGGTCCCGAAGGGGGTGGATTGAGGGATCTTACATTGATTAGAGAAGGGAACAAGTGCCAGCAAGAATGCTGAGCCCCGTAATAGGGTGGATTGTGAGATCCCACGTCGGTCGGGGAGGAGAACGAAGCATTCTTTTTTAGGGTGTGGAGAGCTCTCCCTAGCAGACGCGTTTAAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATTTTCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGCCAGACACCAAACGATGTGCTAGTGAGAAGTCTGAGCCCCGAAGGGGGATAGACACGAGACGGTGTGCCAACAAGGACGCTGGGCCCCAAAGGGGGGTGGATTCGGAGGTCCCACATCGATTAGAGAAGGGAACAAGTGACAGCGAGGACGCTGGGCCCCAAAGGGGGGTGGATTGTGAGATCCCACATCGGTCGGGGAGGAGAACAAAGCATTTTGTATAAGAGTGTGGAAACTTCTCCCTACCAGACGGGTTTTAAAAACCTTGAGGGGAAGCCCACAAGGATAAGCCCAAAGAGGACAATGTCTGCTAGCGATAGGTTTGGGCTGTTACAAATGGTATAAGAGCTAGACACCGAGCGATGTGCTAGTGAGGAGGCTGAGCCCCGAAGGGGGATGGACATGAGGCGGTGTGTTAGCAAGGACATTGGCCCCCGAAGGGAGTGGATTGCGGGCTCCCACATCAATTAAAGAAGGGAACGAGTGCTAGTGAGGACGTTAGGTCACGAATGGGTGTGAATTGTGAGATCCCACATCGGTCAGGGAGGAGAATGAAACGTGCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTGAAAACCTTGAGGGGAAATCCAGAAGGGAAAACCCAAAGAGGACAATATCTTTTAGCGGTAGGATTGGGCTATTACAGATTACTTGACCCATTACCCATTGATTTGTTTATCTGCTTGATGTTCTTGCCTTAATTTTGTTAGTGGATATATATGGTTCTGGGCATAACTCAACATCTTGTGGCAAAACTTTCCATCTCTCTCATGATATTGGTGATTCTTGAACGTGATCTTGTTGATATGTATTCTGTTTCAATTTCTTGGCTTTATTATTCCTCTATCTTGAGTTACATTGAAGTGTTGTTCATAATTTATCGATGTGCCCCCATCCGTTCGGAGAACTAATAGACAATTATATTCGAGTCGTGCTTATAGAAACTAATGTTGTTTTTTTCTTATCGGTCACTAAGTAAGCTGACAACATGGTTTGCGTTGTAGAAACATAAGGTTGTTCATGCCCAAATCATGAAAGTGCCTTTGACTGTTAAGTTCATGAAAGTGCCTTTGACTGTTAAGTTGTTTTCTCGACACCCTTTGTGAGATCCCACATTTGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTGCCTAGCAGACGCGTTTAAAAACTTTGAGGGAAAGCCCAAAAAGGACAATATTTGATAGTAGTGGGCTTGGCTGTTACAAATGGTATCAGAGCCAGACACCAGGTGATGTGCCAACGAGGAGGCTAAGCCCCAAAGTGGGGTGGACATGAGGTGGTGTGCCAACAAGGACACTAGGCCCTAATGGGGGTGGATTGGGGGGTCCTACATCGATTGGAGAAGGGAACGAGTGTCAGCGAGGATGCTGGGCCCTAAAGGGGGTGGATTGTGAGATCCTACATCGGTTGAGGAGAACAAAACATTCTTTATAAGAGTGTGGAAACCTCTGCCTAGCGGACGCGTTTTTGTTTAAAAACTTTGAGGGAAAGTCCTAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCTAGACACTAGGCGATGTGCAAGCAAGGAGGCTAAGCCCCAAAGTGGGGTGGACACGAGGCGGTGTGCCAGCAAAAACACTGGGCCCTAAAGGGGATGGATTGGGAGGTCCTACATCGATTGGAGAAGGGAACGAGTGCCAGTGAGGACACTGGGCCTTAAAGTGGGGTGGATTGTGAGATCCCACATCGGTTAAGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACACGTTTTAAAGCCTTGAGGGGAAGCCCGAAGAGGAAAGCCTCAAGAGGATAATATCTGCTAGCCCAGTGGTGGGCTCGGGCCGTTACAAAATCTATTCCCAAATTCGCATCGAAGGTTAAGCAAATTGGTTAAAAATGAAAGGTTTGGGAATAAATCTGCTCTGTTCTTGCAGTGTTCATGAGATCTCAATGTAATAATGGAATCATACTTTGATTTTTGTTCAAGTTTTCTTCGTATGATCTTGATTACTACTCGTGCTGGAAATTTAAAAGTTTATATAAACATGGATTCTTGATTTGATATAGGCTTTGGACTGTCCGATAGCAGATGCCTTCCGTGCTCGGGAGTTTTTGGACGAGCAGCCACCGTCTCTTCTCGCTCTTTATGTACTGAACATAGAATCAATGCAGCAGTCAAATTCCGACCCGTAAACTGTACGTTGTTGCGAGCGTCTTTTACGTGCCAAGCCAGCTCGGGAGGTCATAGGAAGTATTCGGATTTCTCTAAGCAAAATAGGCATGGCTACTCAAGAAGCAGAAATAGGCAAAATGAGGATAGAGACAGCCTTGAACATGTCGATGAATCTGATTTATTGTCGTCGAAGAATGGACCATTTCTTTCTATCTCGAGCAATTCGAAATCCCAAACCACGGCTACCCCGGGCCCGAGGGAGAAGGAAATTGTTGAACTTTTCAGGAAGATTCAAGCACAGCTTCGGGAACGAGCTGCAATGAAAGAAGAGAAGAAAATCGAAGCTCAAGGACAAACAAAAGGGAGTGAGACGGTCGATTCGCTTCTTACGCTATTGAGAAGGCATTCAGTGGAGCAAGGGAAGAGAGGCGGCGGCGGCGGAGGCGTCAAGGACTCGAGTCTTAACCATGTAAAAGAGAATGGTCCTTATGATGAAGGGAAAAGCTCAAGCATTTTTGGCCTAAGTTCTCATTTGAGAGAGAAGGCTCAAGAGCCAGCAGGCTCGTCTTTGAGTCGACCTGTTTCAAATTTTCAACGTAAATCCCCCGTGCCTGTGGTGAAGTACCAACCGATTTCGCCCGGGGAAAGTATTGTGAACTCCATTGATGTTGTGAATTCGAAGGGACTGAAACTTAACGGAACCGAGACAGGTTCTCAATTGAAAGCAAAGGTATGGACTCGGCAGGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAGGAGAGACAGAGCAGGAGCCAGAGCCAGACCAAGAGTTCGAGTTGGAGCCAGAGCCTGAATCGTCGTATGAGCTAGAGCACGAACCTGATGAGATGGAGCCTGAACTTCTTAATTTATTAGGCGTCGATGACACATTTGATGAAGACGTTAAACACGATGAGAAATTTTCCAAGAACGATGATCACGAGGACTTGAACTCATTGAAGCTTGCTGAGCTGAGGGCGATCGCGAAATCTCGGAGTTTGAAAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCGGTTGCTAAGCAACGCTCAGGTATGAAAATTTCATGTTGCACAGGATGTTTAGGCGCTTTTTTTGTTTTGCTTGAATATAATCAATCTGTATGACCAGTTTTGAGTTGAAATTAGCTTTACAGACCTTTTCCCAGATTGTATATCAGGCTAGCCTTTTCACAGGTTCAGAGTACTTGCCATCTCCATTCATATGAATCATTTTTTAAAAGC

mRNA sequence

CCTTTATCGGTGATATTCCCAAACACAGGCCAGTAGGGCAAAGAAGAACATAGCGGAAGGCGAAAATCCTCAAAAGAAATGCAAATCTAAAACCCTTTTTCCCCCAACTAAAACCTTTCCTTCGAGCTGTTCAAACCAGCAATGTCTCAACTCCCTCATCTTCTTCCTAACAACGCTACAGGCTTTGGACTGTCCGATAGCAGATGCCTTCCGTGCTCGGGAGTTTTTGGACGAGCAGCCACCGTCTCTTCTCGCTCTTTATGTACTGAACATAGAATCAATGCAGCAGTCAAATTCCGACCCGTAAACTGTACGTTGTTGCGAGCGTCTTTTACGTGCCAAGCCAGCTCGGGAGGTCATAGGAAGTATTCGGATTTCTCTAAGCAAAATAGGCATGGCTACTCAAGAAGCAGAAATAGGCAAAATGAGGATAGAGACAGCCTTGAACATGTCGATGAATCTGATTTATTGTCGTCGAAGAATGGACCATTTCTTTCTATCTCGAGCAATTCGAAATCCCAAACCACGGCTACCCCGGGCCCGAGGGAGAAGGAAATTGTTGAACTTTTCAGGAAGATTCAAGCACAGCTTCGGGAACGAGCTGCAATGAAAGAAGAGAAGAAAATCGAAGCTCAAGGACAAACAAAAGGGAGTGAGACGGTCGATTCGCTTCTTACGCTATTGAGAAGGCATTCAGTGGAGCAAGGGAAGAGAGGCGGCGGCGGCGGAGGCGTCAAGGACTCGAGTCTTAACCATGTAAAAGAGAATGGTCCTTATGATGAAGGGAAAAGCTCAAGCATTTTTGGCCTAAGTTCTCATTTGAGAGAGAAGGCTCAAGAGCCAGCAGGCTCGTCTTTGAGTCGACCTGTTTCAAATTTTCAACGTAAATCCCCCGTGCCTGTGGTGAAGTACCAACCGATTTCGCCCGGGGAAAGTATTGTGAACTCCATTGATGTTGTGAATTCGAAGGGACTGAAACTTAACGGAACCGAGACAGGTTCTCAATTGAAAGCAAAGGTATGGACTCGGCAGGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAGGAGAGACAGAGCAGGAGCCAGAGCCAGACCAAGAGTTCGAGTTGGAGCCAGAGCCTGAATCGTCGTATGAGCTAGAGCACGAACCTGATGAGATGGAGCCTGAACTTCTTAATTTATTAGGCGTCGATGACACATTTGATGAAGACGTTAAACACGATGAGAAATTTTCCAAGAACGATGATCACGAGGACTTGAACTCATTGAAGCTTGCTGAGCTGAGGGCGATCGCGAAATCTCGGAGTTTGAAAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCGGTTGCTAAGCAACGCTCAGGTATGAAAATTTCATGTTGCACAGGATGTTTAGGCGCTTTTTTTGTTTTGCTTGAATATAATCAATCTGTATGACCAGTTTTGAGTTGAAATTAGCTTTACAGACCTTTTCCCAGATTGTATATCAGGCTAGCCTTTTCACAGGTTCAGAGTACTTGCCATCTCCATTCATATGAATCATTTTTTAAAAGC

Coding sequence (CDS)

ATGTCTCAACTCCCTCATCTTCTTCCTAACAACGCTACAGGCTTTGGACTGTCCGATAGCAGATGCCTTCCGTGCTCGGGAGTTTTTGGACGAGCAGCCACCGTCTCTTCTCGCTCTTTATGTACTGAACATAGAATCAATGCAGCAGTCAAATTCCGACCCGTAAACTGTACGTTGTTGCGAGCGTCTTTTACGTGCCAAGCCAGCTCGGGAGGTCATAGGAAGTATTCGGATTTCTCTAAGCAAAATAGGCATGGCTACTCAAGAAGCAGAAATAGGCAAAATGAGGATAGAGACAGCCTTGAACATGTCGATGAATCTGATTTATTGTCGTCGAAGAATGGACCATTTCTTTCTATCTCGAGCAATTCGAAATCCCAAACCACGGCTACCCCGGGCCCGAGGGAGAAGGAAATTGTTGAACTTTTCAGGAAGATTCAAGCACAGCTTCGGGAACGAGCTGCAATGAAAGAAGAGAAGAAAATCGAAGCTCAAGGACAAACAAAAGGGAGTGAGACGGTCGATTCGCTTCTTACGCTATTGAGAAGGCATTCAGTGGAGCAAGGGAAGAGAGGCGGCGGCGGCGGAGGCGTCAAGGACTCGAGTCTTAACCATGTAAAAGAGAATGGTCCTTATGATGAAGGGAAAAGCTCAAGCATTTTTGGCCTAAGTTCTCATTTGAGAGAGAAGGCTCAAGAGCCAGCAGGCTCGTCTTTGAGTCGACCTGTTTCAAATTTTCAACGTAAATCCCCCGTGCCTGTGGTGAAGTACCAACCGATTTCGCCCGGGGAAAGTATTGTGAACTCCATTGATGTTGTGAATTCGAAGGGACTGAAACTTAACGGAACCGAGACAGGTTCTCAATTGAAAGCAAAGGTATGGACTCGGCAGGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAGGAGAGACAGAGCAGGAGCCAGAGCCAGACCAAGAGTTCGAGTTGGAGCCAGAGCCTGAATCGTCGTATGAGCTAGAGCACGAACCTGATGAGATGGAGCCTGAACTTCTTAATTTATTAGGCGTCGATGACACATTTGATGAAGACGTTAAACACGATGAGAAATTTTCCAAGAACGATGATCACGAGGACTTGAACTCATTGAAGCTTGCTGAGCTGAGGGCGATCGCGAAATCTCGGAGTTTGAAAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCGGTTGCTAAGCAACGCTCAGGTATGA
Homology
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BLAST of CmoCh19G001040 vs. Swiss-Prot
Match: RHON1_ARATH (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.6e-55
Identity = 177/423 (41.84%), Postives = 243/423 (57.45%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MS   HL  +   G+ LSDSRC   S V  R   +   S C +H+ N  +K  P      
Sbjct: 3   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDHK-NGRLKSVPN----- 62

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
           R+SF C+ASSGG+R+  DFS+ N+HGY R  NRQ+  R+  + ++ SD+LSS+NGP  ++
Sbjct: 63  RSSFVCRASSGGYRRNPDFSRLNKHGY-RGNNRQSGGREDFD-IENSDMLSSRNGPLFNL 122

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRER-AAMKEEKKIE--AQGQTKGSETVDSL 180
           SS+ K Q T++PGPREKEIVELFRK+QAQLR R AA KEEKKIE  ++GQ K SETVDSL
Sbjct: 123 SSSPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSL 182

Query: 181 LTLLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGS 240
           L LLR+HS EQ KR       K SS   V+ +    + ++ ++      +    ++   S
Sbjct: 183 LKLLRKHSGEQSKRQVS----KFSSQGEVQGDTVDKQDRTGNL------VTSGNKDNNAS 242

Query: 241 SLSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQ 300
           S +RP S+F+RKSPVP  +  P    E+   + D  +S  +      T +Q K  V    
Sbjct: 243 SFTRPTSSFRRKSPVPRSQSPPAYSSEA---TFDQSSSYSV------TWTQKKDTVELHD 302

Query: 301 ESEREHWEELQSQGETEQEPEP-----DQEFELEPEPESSYELEHEPD------EMEPEL 360
           E E E   E + + E E EP P     + + EL+PE  S Y+ E + D        +  +
Sbjct: 303 EPEHEPAYEHEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFDVLSQDDGI 362

Query: 361 LNLLGVDDTFDEDVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRL 410
           L++L  DD   +D   D   ++ +  +DL+ LKL ELR IAKSR LKG SKMKK+ELV L
Sbjct: 363 LDVLSDDDESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVEL 398

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BLAST of CmoCh19G001040 vs. Swiss-Prot
Match: BP73_ORYSJ (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.0e-41
Identity = 135/371 (36.39%), Postives = 216/371 (58.22%), Query Frame = 1 

Query: 60  LRASFTCQASSGGHR-KYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDE--SDLLSSKNGP 119
           ++ S  C A+   HR + SD ++  + G +R +++  +++D  E++DE  +D++SSKNGP
Sbjct: 36  MKLSLVCSANPNNHRSRSSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGP 95

Query: 120 FLSISSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQGQTKGSE-TVD 179
            +S++SNS+ Q T+ PG REKEIVELF+++QAQLR R   KEEKK E Q + +G   +VD
Sbjct: 96  PISLTSNSRPQATSVPGEREKEIVELFKRVQAQLRARGKGKEEKKPE-QAKAQGERGSVD 155

Query: 180 SLLTLLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPA 239
           SLL LLR+HSV+Q ++    G  K+ S++  K +      ++SSIF + +  +E+ ++P 
Sbjct: 156 SLLNLLRKHSVDQRRK---SGDEKEQSVDQTKRSNESGNKQNSSIF-IKNDTQEEQKKPH 215

Query: 240 GSSLSRPVSNFQRKSPVPVVKYQPIS--PGESIVNSIDVVNSKGLKLNGTETGSQLKAKV 299
            ++  RP SNF+R+SPVP VK+QP++    E ++N+I+                      
Sbjct: 216 PAAFKRPASNFRRRSPVPNVKFQPVTNVDAERVINNIN---------------------- 275

Query: 300 WTRQESEREHWEELQSQGETEQEPEPDQEFE----LEPEPESSYELEHEPDEMEPELLNL 359
               ++ +E    L+++  T+ EP+    FE    +EPE  S  +L+H  D+ EP+  + 
Sbjct: 276 ----DAVQEAKPTLENKAATD-EPDSVSTFEPNSVIEPENLSLDDLDHISDD-EPDASDT 335

Query: 360 LGVDDTFDE-----------DVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKM 410
                 +DE           D  HD     +    DL++LK+ ELR +AKSR +KG+SKM
Sbjct: 336 DEPSGEYDEPSLQIPSVPIIDESHDTTLKSSLGGPDLSTLKVTELRELAKSRGIKGYSKM 373

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BLAST of CmoCh19G001040 vs. TrEMBL
Match: A0A0A0L7X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G384780 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 1.3e-164
Identity = 326/419 (77.80%), Postives = 359/419 (85.68%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MSQ  HLLP+N TGFGLSDSRC+PCSGV GRAA+ S  SLC EHRIN  VKFRP+NCT L
Sbjct: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
             SFTC+ASSGGHR+  DF KQNRHG+SRSRNRQNE+R+SL++VDESDLL SKNGP LSI
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQGQTKGSETVDSLLTL 180
           SS  KSQ TATPGPREKEIVELFRK+QAQLRERAAMKEEKK+EAQGQTKGSETVDSLL L
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180

Query: 181 LRRHSVEQGKRGGGGGGV--KDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSS 240
           LR+HSVEQGKR  GGGG   KD S NHVKENGPYDEG+ SS FGLS +LREKAQ      
Sbjct: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ------ 240

Query: 241 LSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQE 300
             RPVSNFQR+SPVP VKYQPI PGESIVNS + +NSKG+K NGT+TGSQLK KVWTRQE
Sbjct: 241 --RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQE 300

Query: 301 SEREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLG----VDD 360
           SEREHWEELQSQ E EQEPEPDQEFELEPE E +Y+LEHE DEMEPEL+NLLG    VDD
Sbjct: 301 SEREHWEELQSQREAEQEPEPDQEFELEPEAE-TYDLEHEGDEMEPELVNLLGVSSDVDD 360

Query: 361 TFDEDVKHDEKFSKN--DDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLSNAQ 412
           TF++DVK +E+F+K+   +HEDLNSLKLAELRAIAKSRSL+GFSKMKKSELV+LLSN Q
Sbjct: 361 TFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 410

[Close]
BLAST of CmoCh19G001040 vs. TrEMBL
Match: A0A061DNP1_THECC (Rho termination factor, putative OS=Theobroma cacao GN=TCM_004022 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 2.3e-84
Identity = 206/411 (50.12%), Postives = 264/411 (64.23%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MS   HL+ NN  G+G ++ R L CSG+ GRA T+S  S   +HRI + VK R + C+  
Sbjct: 1   MSHALHLVSNNIPGYGTTECRYLSCSGISGRAVTLSPGSSRRDHRICSQVKIRSLKCSSK 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
             SF C+A S GHR+  DFS+Q RHG+ R RNRQNEDR++ E +DES++LSSKNGP LS+
Sbjct: 61  EISFVCRAGSSGHRRNPDFSRQ-RHGF-RGRNRQNEDRENFESIDESEMLSSKNGPLLSL 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEA-QGQTKGSETVDSLLT 180
           S ++K Q TA PGPREKEIVELFRK+Q QLRERA  KE KK EA QG+ K SETVDSLL 
Sbjct: 121 SGSTKFQATAVPGPREKEIVELFRKVQTQLRERAVAKEAKKTEASQGKGKESETVDSLLK 180

Query: 181 LLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSSL 240
           LLR+HSVEQGKR    G  +D SL+  + NG  +E K SS F  +  +R +A+EP   +L
Sbjct: 181 LLRKHSVEQGKRKNSIGSSRDLSLDQPEVNGSSNEDKGSSFFDSNDRVRSEAKEPYAPTL 240

Query: 241 SRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQES 300
           SRP SNF+RKSPVP +KYQPI   E  VNS++  NS G +   +   S            
Sbjct: 241 SRPASNFRRKSPVPQMKYQPIYSSEETVNSVEHGNSDGKRNLSSAKSSPAP--------- 300

Query: 301 EREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLGVDDTFDED 360
             +H  EL+   E+E EP        E EPES Y+        +P+ L+    D++ D D
Sbjct: 301 --DHVPELEEDSESETEP--------ELEPESIYQ--------DPDALDEFSEDESSDID 360

Query: 361 VKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLSNA 411
              +E   +   HEDL++LKL ELRA+AKSR LKGFSKMKK++LV LLS++
Sbjct: 361 ---EEDREQQIGHEDLSALKLPELRALAKSRGLKGFSKMKKADLVELLSSS 379

[Close]
BLAST of CmoCh19G001040 vs. TrEMBL
Match: F6HZK9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03510 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.2e-81
Identity = 204/410 (49.76%), Postives = 262/410 (63.90%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MS+  HL    A G+G SD RCLPCSGV  RA  +S  +   +++  + VK  P+ C   
Sbjct: 1   MSRAIHL----AAGYGPSDGRCLPCSGVSRRAVALSPCTSRCDYKTLSQVKIVPLKCISR 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
            ASF C ASS G+R+  DFS+Q+RHG+SR RNR NE+ ++ E+++ES+ LSSKNGP LS+
Sbjct: 61  GASFMCNASSSGNRRNPDFSRQSRHGFSRGRNRHNEENNNSENLEESEFLSSKNGPLLSL 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEA-QGQTKGSETVDSLLT 180
           S + K Q TATPGPREKEIVELFRK+QAQLR+RAAMKEE+K EA Q Q K SE VDSLL 
Sbjct: 121 SGSPKFQATATPGPREKEIVELFRKVQAQLRDRAAMKEERKSEASQRQAKESENVDSLLK 180

Query: 181 LLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSSL 240
           LLR+HSVEQGKR       +D +L+   +NGP+DE KS+S F LSS +R++A+EP  +S 
Sbjct: 181 LLRKHSVEQGKRRSSS---RDFNLSQPDQNGPFDEEKSTSFFDLSSSMRDEAREP-NASF 240

Query: 241 SRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQES 300
           +RP SNFQRKSPVP VKY    PG   VNS+   N  G K                    
Sbjct: 241 TRPASNFQRKSPVPRVKYY---PGRDTVNSVSYPNMGGKK-------------------- 300

Query: 301 EREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLGVDDTFDED 360
                   +S  ET  +PEP+ E E EPEPE   ELE E    + ++ + L   ++ D +
Sbjct: 301 -------KKSLVETYSQPEPEPEPEPEPEPEPEPELEPETTFPDGDVFDELSDAESSDTE 360

Query: 361 VKHDEKFSKND--DHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLL 408
           V  DE   + +   H DL++LKL ELRA+AKSR +KGFSK+KK EL+ LL
Sbjct: 361 VYDDEDAEEQESAQHRDLSALKLPELRALAKSRGMKGFSKLKKGELMELL 372

[Close]
BLAST of CmoCh19G001040 vs. TrEMBL
Match: W9QWA9_9ROSA (SAP-like protein BP-73 OS=Morus notabilis GN=L484_001684 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 7.0e-81
Identity = 202/410 (49.27%), Postives = 267/410 (65.12%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MSQ  HL+     G GL + +CL C GV GRAAT+++ S   ++R  +     P+ C   
Sbjct: 1   MSQAVHLVGKTLPGSGLPEGKCLLCPGVSGRAATLNACSSRFQYRFRSQANIGPLRCASA 60

Query: 61  RASFTCQASSG-GHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLS 120
            +S+ C+ASS  G+R+  DFS+QNRHG+SR RNRQNE+RDS E++++SD+LSSKNGP+LS
Sbjct: 61  GSSYVCKASSNNGYRRNPDFSRQNRHGFSRGRNRQNEERDSFENLEDSDILSSKNGPYLS 120

Query: 121 ISSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEA-QGQTKGSETVDSLL 180
           +S++ K Q TA PGPREKEIVELFRK+QAQLRERAA KEEKK E+ QGQ K +ETVDSLL
Sbjct: 121 LSNSPKFQATAAPGPREKEIVELFRKVQAQLRERAAAKEEKKTESMQGQGKDNETVDSLL 180

Query: 181 TLLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSS 240
            LLR+HS EQ KR  G G  K+   +    NG Y+  KS   F  +S +++ A +   SS
Sbjct: 181 KLLRKHSTEQAKRSSGSGNSKEFVFDQQVHNGQYNRRKSGRPFDSNSSVKDDAPDSV-SS 240

Query: 241 LSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQE 300
            +RPVSNFQRKSPVP +K+QP+   E  VNS+  V S G +        Q + +   + +
Sbjct: 241 FTRPVSNFQRKSPVPRLKFQPVYTEEDTVNSVPDVISSGKR-------KQNQVEAVPKSD 300

Query: 301 SEREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLGVDDTFDE 360
            E E   EL+ + ETE   E + E E+EPEPE    LE E    E        +DD  D+
Sbjct: 301 LELEFEPELEFEPETEDHEELESELEVEPEPELVQLLEGELSSTEE-----AHIDD--DD 360

Query: 361 DVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLS 409
           D   DE+  +  +HEDL++ KL ELRA+AKSR +KG+SK+KKS+LV LLS
Sbjct: 361 DESEDEQ--QLTEHEDLSAWKLPELRALAKSRGVKGYSKVKKSDLVYLLS 393

[Close]
BLAST of CmoCh19G001040 vs. TrEMBL
Match: B9GS08_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03890g PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 5.6e-78
Identity = 208/413 (50.36%), Postives = 263/413 (63.68%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MSQ  HL+  N  G+G S+ RCLPCSG+ GRA  VS  S    H +++  +F  + C+  
Sbjct: 1   MSQAVHLVTKNLPGYGSSEGRCLPCSGISGRAVAVSPCSSRGVHYVHSQAQFGKMKCSSR 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
            +S  C+ SSGGHR+  DFS+QN+ G+SR+RNRQNE+ +  E++DESDLL+SKNGP LS+
Sbjct: 61  ASSIVCK-SSGGHRRNPDFSRQNKQGFSRNRNRQNEEGNGFENLDESDLLTSKNGPLLSL 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEA-QGQTKGSETVDSLLT 180
           S   K Q TA PGPREKEIVELFRK+QAQLRERAA+KEEKK+EA QG+ + +ETVDSLL 
Sbjct: 121 SGTPKFQATAAPGPREKEIVELFRKVQAQLRERAAVKEEKKVEASQGKGRENETVDSLLK 180

Query: 181 LLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSSL 240
           LLR+HSVEQGK+        D SL+   ENG Y + K +S F  S   R    EP  +S 
Sbjct: 181 LLRKHSVEQGKKKTSNISSGDLSLDQ-PENGTYKKAKGTSFFDSSKKERNDVLEPI-TSF 240

Query: 241 SRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQES 300
           +RP SNF+RKSPVP VK+QPI   E  VNS     +  L LNG E   Q +    T QE 
Sbjct: 241 TRPPSNFRRKSPVPQVKFQPIYSSEDPVNS-----TSHLNLNG-EKKQQFEILPDTTQEL 300

Query: 301 EREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLGVDDTFDED 360
           E +   EL ++ E E + EP      EPEPE S+      DE+        G     D +
Sbjct: 301 ELD--PELDAEEEHELDSEP------EPEPEPSFAGGDVFDELSE------GESSDMD-N 360

Query: 361 VKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLSNAQV 413
           V  D +  +  +HEDL+SLKL ELRA+AKSR +KGFSKMKK ELV LLS + +
Sbjct: 361 VDGDGEKQQLIEHEDLSSLKLPELRALAKSRGVKGFSKMKKGELVELLSGSSM 389

[Close]
BLAST of CmoCh19G001040 vs. TAIR10
Match: AT1G06190.1 (AT1G06190.1 Rho termination factor)

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-56
Identity = 177/423 (41.84%), Postives = 243/423 (57.45%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MS   HL  +   G+ LSDSRC   S V  R   +   S C +H+ N  +K  P      
Sbjct: 3   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDHK-NGRLKSVPN----- 62

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
           R+SF C+ASSGG+R+  DFS+ N+HGY R  NRQ+  R+  + ++ SD+LSS+NGP  ++
Sbjct: 63  RSSFVCRASSGGYRRNPDFSRLNKHGY-RGNNRQSGGREDFD-IENSDMLSSRNGPLFNL 122

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRER-AAMKEEKKIE--AQGQTKGSETVDSL 180
           SS+ K Q T++PGPREKEIVELFRK+QAQLR R AA KEEKKIE  ++GQ K SETVDSL
Sbjct: 123 SSSPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSL 182

Query: 181 LTLLRRHSVEQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGS 240
           L LLR+HS EQ KR       K SS   V+ +    + ++ ++      +    ++   S
Sbjct: 183 LKLLRKHSGEQSKRQVS----KFSSQGEVQGDTVDKQDRTGNL------VTSGNKDNNAS 242

Query: 241 SLSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQ 300
           S +RP S+F+RKSPVP  +  P    E+   + D  +S  +      T +Q K  V    
Sbjct: 243 SFTRPTSSFRRKSPVPRSQSPPAYSSEA---TFDQSSSYSV------TWTQKKDTVELHD 302

Query: 301 ESEREHWEELQSQGETEQEPEP-----DQEFELEPEPESSYELEHEPD------EMEPEL 360
           E E E   E + + E E EP P     + + EL+PE  S Y+ E + D        +  +
Sbjct: 303 EPEHEPAYEHEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFDVLSQDDGI 362

Query: 361 LNLLGVDDTFDEDVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRL 410
           L++L  DD   +D   D   ++ +  +DL+ LKL ELR IAKSR LKG SKMKK+ELV L
Sbjct: 363 LDVLSDDDESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVEL 398

[Close]
BLAST of CmoCh19G001040 vs. TAIR10
Match: AT2G31150.1 (AT2G31150.1 ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism)

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-23
Identity = 115/317 (36.28%), Postives = 163/317 (51.42%), Query Frame = 1 

Query: 74  RKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVD---ESDLLSSKNGPFLSISSNSKSQTTA 133
           R   DFS+ N+HG+ R RNR+NED+D L  VD   E D+LSSKN                
Sbjct: 28  RNNPDFSRNNKHGF-RGRNRRNEDKDGL--VDGGLEDDMLSSKN---------------- 87

Query: 134 TPGPREKEIVELFRKIQAQLRER-AAMKEEKKIEAQGQTKG---SETVDSLLTLLRRHSV 193
                EKEIVELF+K+Q QLR R AA KEEKK E   + +G   SETVDSLL LLR+HS 
Sbjct: 88  -----EKEIVELFKKVQVQLRARAAAKKEEKKTEEASKGQGGKESETVDSLLKLLRKHSG 147

Query: 194 EQGKRGGGGGGVKDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSSLSRPVSNF 253
           EQ K+       + S+ N  K+    D+  S      SS    + ++   +  +RP S+F
Sbjct: 148 EQSKK-------QVSNFNSEKQL-QRDDDASERQNHSSSRFDSRNKDHNATPFTRPASSF 207

Query: 254 QRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQESEREHWEE 313
           +R SPVP  K Q     E+I    D  +S  +               WT+++      ++
Sbjct: 208 KRNSPVPRHKSQASYSSEAI---FDEASSYSV--------------TWTQKK------DQ 267

Query: 314 LQSQGETEQEPEPDQEFEL-EPEPESSYELEHEPDEMEPELLNLLGVDDTFDEDVKHDEK 373
           ++S+ E E EPEP+   E  EPEPE+ YE E EP+    E ++ L ++  + E+ + +E 
Sbjct: 268 VESRDEPEYEPEPESAAEYDEPEPEAEYEPESEPELAILESVSELKLESFYQEEDEDEED 289

Query: 374 FS-----KNDDHEDLNS 378
            +      +DD E LN+
Sbjct: 328 HNFVIDELSDDDESLNT 289

[Close]
BLAST of CmoCh19G001040 vs. NCBI nr
Match: gi|659093202|ref|XP_008447421.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 592.0 bits (1525), Expect = 7.8e-166
Identity = 328/415 (79.04%), Postives = 363/415 (87.47%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MSQ  HLLP N TGFGLSDSRCLPCSGV GRAA+ S RSLC EH IN  VKFRP+NCT L
Sbjct: 1   MSQAIHLLPRNPTGFGLSDSRCLPCSGVSGRAASFSFRSLCAEHGINVPVKFRPLNCTSL 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
             SFTC+ASSG HR+  DF KQNR GYSRSRNRQNE+R+SLE+VDESDLLSS+NGP LSI
Sbjct: 61  GVSFTCKASSG-HRRNPDFPKQNRQGYSRSRNRQNEERESLENVDESDLLSSRNGPLLSI 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQGQTKGSETVDSLLTL 180
           SS  KSQ TATPGPREKEIVELFRK+QAQLRERAAMKEEKK+EAQGQTKGSETVDSLL L
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQGQTKGSETVDSLLKL 180

Query: 181 LRRHSVEQGKRGGGGGGV-KDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSSL 240
           LR+H+VEQGKR  G GG  KD S NHVKENGPYDEG+ SSIFGLS +LREKAQEPAG S 
Sbjct: 181 LRKHAVEQGKRSSGAGGSNKDISFNHVKENGPYDEGRGSSIFGLSPNLREKAQEPAG-SF 240

Query: 241 SRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQES 300
            RP SNFQR+SPVP VKYQPI PGESIV+S + +NSKG+KLNGTETGSQLKAKVWTRQES
Sbjct: 241 RRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTETGSQLKAKVWTRQES 300

Query: 301 EREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLGV----DDT 360
           EREHWEELQSQ +TEQEPE DQEFE+EPE E +Y+LEHE DEMEPEL+NLLGV    DDT
Sbjct: 301 EREHWEELQSQRDTEQEPEVDQEFEMEPEAE-TYDLEHEADEMEPELVNLLGVSSDIDDT 360

Query: 361 FDEDVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLSNA 411
           F++D+K +E+FSK+ +HE+LNSLKLAELRAIAKSRSL+GFSKMKKSELV+LLSN+
Sbjct: 361 FEDDIKDNEEFSKHGEHENLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNS 412

[Close]
BLAST of CmoCh19G001040 vs. NCBI nr
Match: gi|449468554|ref|XP_004151986.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 587.4 bits (1513), Expect = 1.9e-164
Identity = 326/419 (77.80%), Postives = 359/419 (85.68%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MSQ  HLLP+N TGFGLSDSRC+PCSGV GRAA+ S  SLC EHRIN  VKFRP+NCT L
Sbjct: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
             SFTC+ASSGGHR+  DF KQNRHG+SRSRNRQNE+R+SL++VDESDLL SKNGP LSI
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQGQTKGSETVDSLLTL 180
           SS  KSQ TATPGPREKEIVELFRK+QAQLRERAAMKEEKK+EAQGQTKGSETVDSLL L
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKL 180

Query: 181 LRRHSVEQGKRGGGGGGV--KDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSS 240
           LR+HSVEQGKR  GGGG   KD S NHVKENGPYDEG+ SS FGLS +LREKAQ      
Sbjct: 181 LRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ------ 240

Query: 241 LSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQE 300
             RPVSNFQR+SPVP VKYQPI PGESIVNS + +NSKG+K NGT+TGSQLK KVWTRQE
Sbjct: 241 --RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQE 300

Query: 301 SEREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLG----VDD 360
           SEREHWEELQSQ E EQEPEPDQEFELEPE E +Y+LEHE DEMEPEL+NLLG    VDD
Sbjct: 301 SEREHWEELQSQREAEQEPEPDQEFELEPEAE-TYDLEHEGDEMEPELVNLLGVSSDVDD 360

Query: 361 TFDEDVKHDEKFSKN--DDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLSNAQ 412
           TF++DVK +E+F+K+   +HEDLNSLKLAELRAIAKSRSL+GFSKMKKSELV+LLSN Q
Sbjct: 361 TFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ 410

[Close]
BLAST of CmoCh19G001040 vs. NCBI nr
Match: gi|659093200|ref|XP_008447419.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 578.2 bits (1489), Expect = 1.2e-161
Identity = 325/424 (76.65%), Postives = 361/424 (85.14%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATG---------FGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVK 60
           MSQ  HLLP N TG         F + DSRCLPCSGV GRAA+ S RSLC EH IN  VK
Sbjct: 1   MSQAIHLLPRNPTGGKFEVGEVFFFVEDSRCLPCSGVSGRAASFSFRSLCAEHGINVPVK 60

Query: 61  FRPVNCTLLRASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLS 120
           FRP+NCT L  SFTC+ASSG HR+  DF KQNR GYSRSRNRQNE+R+SLE+VDESDLLS
Sbjct: 61  FRPLNCTSLGVSFTCKASSG-HRRNPDFPKQNRQGYSRSRNRQNEERESLENVDESDLLS 120

Query: 121 SKNGPFLSISSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQGQTKGS 180
           S+NGP LSISS  KSQ TATPGPREKEIVELFRK+QAQLRERAAMKEEKK+EAQGQTKGS
Sbjct: 121 SRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQGQTKGS 180

Query: 181 ETVDSLLTLLRRHSVEQGKRGGGGGGV-KDSSLNHVKENGPYDEGKSSSIFGLSSHLREK 240
           ETVDSLL LLR+H+VEQGKR  G GG  KD S NHVKENGPYDEG+ SSIFGLS +LREK
Sbjct: 181 ETVDSLLKLLRKHAVEQGKRSSGAGGSNKDISFNHVKENGPYDEGRGSSIFGLSPNLREK 240

Query: 241 AQEPAGSSLSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLK 300
           AQEPAG S  RP SNFQR+SPVP VKYQPI PGESIV+S + +NSKG+KLNGTETGSQLK
Sbjct: 241 AQEPAG-SFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTETGSQLK 300

Query: 301 AKVWTRQESEREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLL 360
           AKVWTRQESEREHWEELQSQ +TEQEPE DQEFE+EPE E +Y+LEHE DEMEPEL+NLL
Sbjct: 301 AKVWTRQESEREHWEELQSQRDTEQEPEVDQEFEMEPEAE-TYDLEHEADEMEPELVNLL 360

Query: 361 GV----DDTFDEDVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRL 411
           GV    DDTF++D+K +E+FSK+ +HE+LNSLKLAELRAIAKSRSL+GFSKMKKSELV+L
Sbjct: 361 GVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLAELRAIAKSRSLRGFSKMKKSELVQL 420

[Close]
BLAST of CmoCh19G001040 vs. NCBI nr
Match: gi|659093206|ref|XP_008447423.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X6 [Cucumis melo])

HSP 1 Score: 575.9 bits (1483), Expect = 5.8e-161
Identity = 323/415 (77.83%), Postives = 358/415 (86.27%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATGFGLSDSRCLPCSGVFGRAATVSSRSLCTEHRINAAVKFRPVNCTLL 60
           MSQ  HLLP N T     DSRCLPCSGV GRAA+ S RSLC EH IN  VKFRP+NCT L
Sbjct: 1   MSQAIHLLPRNPT-----DSRCLPCSGVSGRAASFSFRSLCAEHGINVPVKFRPLNCTSL 60

Query: 61  RASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVDESDLLSSKNGPFLSI 120
             SFTC+ASSG HR+  DF KQNR GYSRSRNRQNE+R+SLE+VDESDLLSS+NGP LSI
Sbjct: 61  GVSFTCKASSG-HRRNPDFPKQNRQGYSRSRNRQNEERESLENVDESDLLSSRNGPLLSI 120

Query: 121 SSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQGQTKGSETVDSLLTL 180
           SS  KSQ TATPGPREKEIVELFRK+QAQLRERAAMKEEKK+EAQGQTKGSETVDSLL L
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQGQTKGSETVDSLLKL 180

Query: 181 LRRHSVEQGKRGGGGGGV-KDSSLNHVKENGPYDEGKSSSIFGLSSHLREKAQEPAGSSL 240
           LR+H+VEQGKR  G GG  KD S NHVKENGPYDEG+ SSIFGLS +LREKAQEPAG S 
Sbjct: 181 LRKHAVEQGKRSSGAGGSNKDISFNHVKENGPYDEGRGSSIFGLSPNLREKAQEPAG-SF 240

Query: 241 SRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTETGSQLKAKVWTRQES 300
            RP SNFQR+SPVP VKYQPI PGESIV+S + +NSKG+KLNGTETGSQLKAKVWTRQES
Sbjct: 241 RRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTETGSQLKAKVWTRQES 300

Query: 301 EREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEPELLNLLGV----DDT 360
           EREHWEELQSQ +TEQEPE DQEFE+EPE E +Y+LEHE DEMEPEL+NLLGV    DDT
Sbjct: 301 EREHWEELQSQRDTEQEPEVDQEFEMEPEAE-TYDLEHEADEMEPELVNLLGVSSDIDDT 360

Query: 361 FDEDVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKKSELVRLLSNA 411
           F++D+K +E+FSK+ +HE+LNSLKLAELRAIAKSRSL+GFSKMKKSELV+LLSN+
Sbjct: 361 FEDDIKDNEEFSKHGEHENLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNS 407

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BLAST of CmoCh19G001040 vs. NCBI nr
Match: gi|659093196|ref|XP_008447417.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 572.4 bits (1474), Expect = 6.4e-160
Identity = 324/430 (75.35%), Postives = 360/430 (83.72%), Query Frame = 1 

Query: 1   MSQLPHLLPNNATG---------------FGLSDSRCLPCSGVFGRAATVSSRSLCTEHR 60
           MSQ  HLLP N T                F + DSRCLPCSGV GRAA+ S RSLC EH 
Sbjct: 1   MSQAIHLLPRNPTVHFGMIGGKFEVGEVFFFVEDSRCLPCSGVSGRAASFSFRSLCAEHG 60

Query: 61  INAAVKFRPVNCTLLRASFTCQASSGGHRKYSDFSKQNRHGYSRSRNRQNEDRDSLEHVD 120
           IN  VKFRP+NCT L  SFTC+ASSG HR+  DF KQNR GYSRSRNRQNE+R+SLE+VD
Sbjct: 61  INVPVKFRPLNCTSLGVSFTCKASSG-HRRNPDFPKQNRQGYSRSRNRQNEERESLENVD 120

Query: 121 ESDLLSSKNGPFLSISSNSKSQTTATPGPREKEIVELFRKIQAQLRERAAMKEEKKIEAQ 180
           ESDLLSS+NGP LSISS  KSQ TATPGPREKEIVELFRK+QAQLRERAAMKEEKK+EAQ
Sbjct: 121 ESDLLSSRNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKMEAQ 180

Query: 181 GQTKGSETVDSLLTLLRRHSVEQGKRGGGGGGV-KDSSLNHVKENGPYDEGKSSSIFGLS 240
           GQTKGSETVDSLL LLR+H+VEQGKR  G GG  KD S NHVKENGPYDEG+ SSIFGLS
Sbjct: 181 GQTKGSETVDSLLKLLRKHAVEQGKRSSGAGGSNKDISFNHVKENGPYDEGRGSSIFGLS 240

Query: 241 SHLREKAQEPAGSSLSRPVSNFQRKSPVPVVKYQPISPGESIVNSIDVVNSKGLKLNGTE 300
            +LREKAQEPAG S  RP SNFQR+SPVP VKYQPI PGESIV+S + +NSKG+KLNGTE
Sbjct: 241 PNLREKAQEPAG-SFRRPASNFQRRSPVPRVKYQPIYPGESIVDSTNGMNSKGMKLNGTE 300

Query: 301 TGSQLKAKVWTRQESEREHWEELQSQGETEQEPEPDQEFELEPEPESSYELEHEPDEMEP 360
           TGSQLKAKVWTRQESEREHWEELQSQ +TEQEPE DQEFE+EPE E +Y+LEHE DEMEP
Sbjct: 301 TGSQLKAKVWTRQESEREHWEELQSQRDTEQEPEVDQEFEMEPEAE-TYDLEHEADEMEP 360

Query: 361 ELLNLLGV----DDTFDEDVKHDEKFSKNDDHEDLNSLKLAELRAIAKSRSLKGFSKMKK 411
           EL+NLLGV    DDTF++D+K +E+FSK+ +HE+LNSLKLAELRAIAKSRSL+GFSKMKK
Sbjct: 361 ELVNLLGVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLAELRAIAKSRSLRGFSKMKK 420

The following BLAST results are available for this feature:
BLAST of CmoCh19G001040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHON1_ARATH5.6e-5541.84Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON... [more]
BP73_ORYSJ6.0e-4136.39SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1[more]
BLAST of CmoCh19G001040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X8_CUCSA1.3e-16477.80Uncharacterized protein OS=Cucumis sativus GN=Csa_3G384780 PE=4 SV=1[more]
A0A061DNP1_THECC2.3e-8450.12Rho termination factor, putative OS=Theobroma cacao GN=TCM_004022 PE=4 SV=1[more]
F6HZK9_VITVI3.2e-8149.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03510 PE=4 SV=... [more]
W9QWA9_9ROSA7.0e-8149.27SAP-like protein BP-73 OS=Morus notabilis GN=L484_001684 PE=4 SV=1[more]
B9GS08_POPTR5.6e-7850.36Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03890g PE=4 SV=1[more]
BLAST of CmoCh19G001040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06190.13.1e-5641.84 Rho termination factor[more]
AT2G31150.12.7e-2336.28 ATP binding;ATPases, coupled to transmembrane movement of ions, phos... [more]
BLAST of CmoCh19G001040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093202|ref|XP_008447421.1|7.8e-16679.04PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis ... [more]
gi|449468554|ref|XP_004151986.1|1.9e-16477.80PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis ... [more]
gi|659093200|ref|XP_008447419.1|1.2e-16176.65PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X3 [Cucumis ... [more]
gi|659093206|ref|XP_008447423.1|5.8e-16177.83PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X6 [Cucumis ... [more]
gi|659093196|ref|XP_008447417.1|6.4e-16075.35PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011112Rho_N
Vocabulary: Biological Process
TermDefinition
GO:0006353DNA-templated transcription, termination
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G001040.1CmoCh19G001040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011112Rho termination factor, N-terminalPFAMPF07498Rho_Ncoord: 374..404
score: 3.
IPR011112Rho termination factor, N-terminalSMARTSM00959Rho_N_2_acoord: 374..411
score: 0
NoneNo IPR availableunknownCoilCoilcoord: 139..159
scor
NoneNo IPR availableGENE3DG3DSA:1.10.720.10coord: 373..404
score: 6.
NoneNo IPR availablePANTHERPTHR34449FAMILY NOT NAMEDcoord: 2..412
score: 3.0E
NoneNo IPR availablePANTHERPTHR34449:SF2ATP BINDING / ATPASE-RELATEDcoord: 2..412
score: 3.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G001040Cucsa.053660Cucumber (Gy14) v1cgycmoB0059
CmoCh19G001040CmaCh19G000920Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G001040Cla005974Watermelon (97103) v1cmowmB485
CmoCh19G001040Csa3G384780Cucumber (Chinese Long) v2cmocuB506
CmoCh19G001040MELO3C012881Melon (DHL92) v3.5.1cmomeB461
CmoCh19G001040ClCG07G001090Watermelon (Charleston Gray)cmowcgB466
CmoCh19G001040CSPI03G22490Wild cucumber (PI 183967)cmocpiB512
CmoCh19G001040Lsi05G010220Bottle gourd (USVL1VR-Ls)cmolsiB470
CmoCh19G001040Cp4.1LG15g00810Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G001040MELO3C012881.2Melon (DHL92) v3.6.1cmomedB532
CmoCh19G001040CsaV3_3G022220Cucumber (Chinese Long) v3cmocucB0604
CmoCh19G001040Cla97C07G129370Watermelon (97103) v2cmowmbB521
CmoCh19G001040Bhi05G000147Wax gourdcmowgoB0654
CmoCh19G001040CsGy3G021560Cucumber (Gy14) v2cgybcmoB355
CmoCh19G001040Carg16880Silver-seed gourdcarcmoB1021
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G001040Silver-seed gourdcarcmoB1055
CmoCh19G001040Silver-seed gourdcarcmoB1286
CmoCh19G001040Silver-seed gourdcarcmoB1449
CmoCh19G001040Cucumber (Chinese Long) v3cmocucB0595
CmoCh19G001040Cucumber (Chinese Long) v3cmocucB0606
CmoCh19G001040Watermelon (97103) v2cmowmbB517
CmoCh19G001040Watermelon (97103) v2cmowmbB520
CmoCh19G001040Wax gourdcmowgoB0639
CmoCh19G001040Cucurbita moschata (Rifu)cmocmoB207
CmoCh19G001040Cucurbita moschata (Rifu)cmocmoB300
CmoCh19G001040Cucurbita moschata (Rifu)cmocmoB387
CmoCh19G001040Cucurbita moschata (Rifu)cmocmoB397
CmoCh19G001040Cucurbita moschata (Rifu)cmocmoB402
CmoCh19G001040Cucumber (Gy14) v1cgycmoB0710
CmoCh19G001040Cucumber (Gy14) v1cgycmoB1056
CmoCh19G001040Cucurbita maxima (Rimu)cmacmoB357
CmoCh19G001040Cucurbita maxima (Rimu)cmacmoB598
CmoCh19G001040Cucurbita maxima (Rimu)cmacmoB817
CmoCh19G001040Cucurbita maxima (Rimu)cmacmoB907
CmoCh19G001040Wild cucumber (PI 183967)cmocpiB503
CmoCh19G001040Wild cucumber (PI 183967)cmocpiB513
CmoCh19G001040Cucumber (Chinese Long) v2cmocuB497
CmoCh19G001040Cucumber (Chinese Long) v2cmocuB509
CmoCh19G001040Melon (DHL92) v3.5.1cmomeB467
CmoCh19G001040Melon (DHL92) v3.5.1cmomeB474
CmoCh19G001040Watermelon (Charleston Gray)cmowcgB463
CmoCh19G001040Watermelon (Charleston Gray)cmowcgB465
CmoCh19G001040Watermelon (97103) v1cmowmB489
CmoCh19G001040Watermelon (97103) v1cmowmB500
CmoCh19G001040Cucurbita pepo (Zucchini)cmocpeB486
CmoCh19G001040Cucurbita pepo (Zucchini)cmocpeB498
CmoCh19G001040Cucurbita pepo (Zucchini)cmocpeB491
CmoCh19G001040Cucurbita pepo (Zucchini)cmocpeB507
CmoCh19G001040Bottle gourd (USVL1VR-Ls)cmolsiB449
CmoCh19G001040Bottle gourd (USVL1VR-Ls)cmolsiB471
CmoCh19G001040Cucumber (Gy14) v2cgybcmoB206
CmoCh19G001040Cucumber (Gy14) v2cgybcmoB357
CmoCh19G001040Melon (DHL92) v3.6.1cmomedB539
CmoCh19G001040Melon (DHL92) v3.6.1cmomedB546