CsGy3G021560.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAATTCTTCAAAGAAATGCAAATAAAAAACCCTTCCTTTCCTCACTAAAACCTTTCCTTCCTTCCAGGTGTCTTAACCAGCAATGTCTCAAGCCATTCATCTTCTTCCTCACAACCCTACAGGTATCTGTTCTTCATATCCACAAAATCTCTGTTGGGTGCTCTTTATTTTTGTTCTTTGCTTGCTTAAAGGCTGGGAAATTAAGTACACTATTATTTTTACATTTACTGGGTGTTTCTAATTTCCATATAATTTCATGTGTTTTGTCCTAACGATCAAATGTTTGCATTAAGGTCTCTAAAGTTCTCGAATTTTGAATTTCTATAGGTTTTAGCGCCTCTTGGTTTTATCTGTGTTTTGTTGTTTACTTTTCTATTTGGTTGAATCTGTTTGTGGAGAAATTAAAGCTTTGCACTGGTTGGATTTCGTTCGACTTTTTGTGTTGAGCTTGTTCTGTTTCTCTCTATTTTCCCTTTTCTAAGTTTAGGTTTGATTTTAGAGTACTTAATACCATTTTCTGATTGTTTGAAAATTCTCTACTTGGTTGGATTACATGACCCTTTGGTTTCCTTTGCTGTATCATATTCTGGCCTTCTCGAATTGATGTAGATGTATGAGTTTTCTTTTCCTCAGTTTTTGGAGGAAGGTCAAGATGTAATGGTTACATCTGATATTGGGATATTCTCACTGCTTGCTTGAAGTTGGGGGTATTTGCATCGTCACTTTGCAGTATTTGCATTTGTTGAATCTTATCTCTTTGCTGTATGTTCTGTTCTGATATTGACTTTTCCAGTTTTCACATCCAATGTTTTAAAAGGTTATTGAGGTTTACGTCTTGAGGGTCGCCTCAGGGCAAGACTCTAACTTTTAGCTGTGAGAATTGTGGCTTCTTTGAACCACAAGAGGTTTATGCCATTTTGTTATAATGCATCAAGGCTTAAAAGTATCTATGACCCATATAACGATTAGAATAATAATATTAATTTGCCTCATTCTTCAAAATTATAAAACTTCGTGTTCTGAAAATAGGAACTATTACTACTTTTTCTACCGTGACTTTCAAAGTAATTATAATATTAGTCAATCCTTTAAATGATAATAGTAGAGAAGTTAAAGATATCTCTTTTAGATTTTTTTTGTTCAAGCGGCAGTTAATAGGGGTGGTTTTTTATTTTTTATTTTATTTATTTTTCTCTTTTATGATCATTATGTTTAGCAACACCTGGTCAAACTAACTTAGGAGTTATTAAATGTCTTTAGTTAAATTCGAAGCTTACGCCTTATGCTGGTTTAAGCCTGTGTTGTGCCTTTATGAGGAAAAGCCACAAGGGCGCTTTTTTCCTTTGTTAATTTCCATATTATTTTGCACATATGAAGATTGTTTAAACTGTTTTGATTTAAGGGCTTTGCTATAACTTCATCTTGAATTATTTTGGAGTGTTGTTTCCATAATTCAACGACGTGCCTCCATCTATTTCGGGAAGAGATTGACGATTGTACGTTGTCACATTTATAGGATTTATTTTGATTTTTATTTATTGTTGATCACTGTTGATGCATTATTGATGTTCAATAGTAACAGATAACGAGTCTGGAATTACATGTCTTGGTTGTAAAAACATTAGGCTGTTCATATATGCTCAAATCATGAAACTTAAAGCCTATGACTTGACCGCTAAGTTGTTTTCTCGATGCCCTTTACCTACAGCAACTGGTCCTAGTTGTTGCTTCTCCATTTTTCAATGAATAACCACACTATTATTGGTTGTTTTGATATACTTAATGGAAGCTTCTTTGTCATTTCTACATTTCTTCTTTTTCTCTTTTCAAGCAATGCCTTTTCTTTATTTGAATGGGACTTCAATGGACTTCAATTGCATATTTCTAATTTTGTGATTGTTTTCTTTTCAATGAATAACCACACTTACCTAAAAGAAATGCCTCAAGCCAAGCAAAATAAAACTTAGGGAATGTTTGCATAAAGGTTCCGTAATCTGAAGCCAACAAATTGAAATGTAATCTAGCAAGAGACCAAACATTAGAAGAACTAATTGCGTAGTTCTAATTTTGTGGTTTATACCTTATAGCATGATGGATGACAACTGTTGCTGTGTTTATGATTGCTTACTATGTGTTTATGATTGCTTACTATTAATGTATGGCATAACACTTTGGACTAATAGGTGGAAAATTCGAGGTTGGTGAATTTTTTTTTTTTTATTTGTTCTTTCTGAAGGTATACTTCTTTTTCTCTTTCGAAGGCAACATCTTTTCTTGCTGCAGATGGCTTTCCTAGATTGGAGATTTTAAATAAATGGTTAAAAAGAAAGACTTGGGAATAAACCTGCTCTGTTTTTGCAACGTTCAGGGGATTTCAATATATTTATGGAATGGGAATCATACCCCATTTTTTACTTCGATACTTCTCCCTTATAAATTCTGTTCTTGTTTGCTTTATATAACTTGGGTTACTACTCGTGCTCGAAATCTTATTAGTTCTTATAAACATGGAATCTGGATTTGATATAGGCTTTGGACTGTCAGATAGCAGATGCATACCTTGCTCTGGAGTTTCAGGACGAGCAGCCTCGTTCTCTTTTCACTCTTTATGTGCTGAACATAGAATCAATGTACCAGTCAAATTTAGACCTCTAAACTGTACTTCGTTGGGGGAGTCTTTTACGTGCAAAGCCAGCTCAGGAGGTCACAGGAGAAACCCAGATTTTCCAAAGCAAAATAGGCATGGCTTCTCAAGAAGCAGAAATAGGCAAAATGAGGAGAGAGAGAGTCTTGACAATGTTGATGAATCTGATTTATTATTGTCTAAGAATGGACCATTACTTTCCATCTCTAGCACCCCAAAATCCCAGGCCACCGCTACCCCAGGACCAAGGGAAAAGGAAATTGTTGAACTTTTCAGAAAGGTTCAAGCTCAGCTTCGGGAGCGAGCAGCAATGAAAGAAGAGAAGAAAGTGGAAGCTCAAGGACAAACGAAAGGGAGTGAGACAGTAGATTCTCTTCTTAAGCTATTGCGAAAGCATTCCGTGGAACAAGGGAAGAGAAGCAGTGGTGGGGGTGGCAGCAGCAACAAGGACATCAGTTTTAACCATGTCAAAGAGAATGGTCCTTACGATGAAGGAAGAGGCTCAAGCTTTTTTGGACTAAGTCCCAATTTGAGGGAGAAGGCCCAAAGACCCGTATCAAATTTCCAACGTAGATCCCCCGTGCCTCGGGTGAAGTACCAACCAATTTACCCTGGGGAAAGTATTGTCAACTCGACCAATGGTATGAATTCAAAAGGTGTGAAACCTAATGGAACTGATACAGGTTCTCAACTGAAAGGAAAGGTATGGACTCGGCAAGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAAGGGAGGCAGAACAGGAGCCAGAGCCGGACCAAGAGTTCGAATTGGAACCAGAGGCTGAAACATATGATCTAGAGCATGAAGGTGATGAAATGGAGCCTGAACTTGTTAATTTATTAGGTGTGTCATCAGACGTCGATGACACGTTTGAGGATGATGTTAAAGACAATGAGGAATTTGCAAAGCATGGTGAACAAGAACATGAGGACTTGAACTCATTGAAACTTGCTGAACTGAGGGCGATTGCCAAATCTCGTAGTTTGAGAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCAATTGTTAAGCAACGGTCAGTAAGGATGTCATACTGGACAGGAACCTCTGGATTTAGGTTGTTTAGGTGTTTTTTTGTACTTATTTTTGTTGTGCTTATCAATCTGTTTGACTAGTTTTGAGTTAGAAATTGGTATTAGCTTTTTACAAACTCTTTCCCAGATTGTATATCAGGCTAATCTTCGCAGGTTCAGAGTACAAGTCAACAACAATCTCTTCTTTTAGTTTTTTCTCTTCTATTCAGACTCTTGTTCACTTATAGGAACCATTTTTTAAAGGGATTTTTATTGCTAACATGGTCCTCAAGCGTTTCCATCATGTTGCTCAGTGGGTGGGATTGATTTGAAAGGTTTGGAAGAATGATTGCTGTTTTTATGTGTTTGGTAAAAGAAAT GAAATTCTTCAAAGAAATGCAAATAAAAAACCCTTCCTTTCCTCACTAAAACCTTTCCTTCCTTCCAGGTGTCTTAACCAGCAATGTCTCAAGCCATTCATCTTCTTCCTCACAACCCTACAGGCTTTGGACTGTCAGATAGCAGATGCATACCTTGCTCTGGAGTTTCAGGACGAGCAGCCTCGTTCTCTTTTCACTCTTTATGTGCTGAACATAGAATCAATGTACCAGTCAAATTTAGACCTCTAAACTGTACTTCGTTGGGGGAGTCTTTTACGTGCAAAGCCAGCTCAGGAGGTCACAGGAGAAACCCAGATTTTCCAAAGCAAAATAGGCATGGCTTCTCAAGAAGCAGAAATAGGCAAAATGAGGAGAGAGAGAGTCTTGACAATGTTGATGAATCTGATTTATTATTGTCTAAGAATGGACCATTACTTTCCATCTCTAGCACCCCAAAATCCCAGGCCACCGCTACCCCAGGACCAAGGGAAAAGGAAATTGTTGAACTTTTCAGAAAGGTTCAAGCTCAGCTTCGGGAGCGAGCAGCAATGAAAGAAGAGAAGAAAGTGGAAGCTCAAGGACAAACGAAAGGGAGTGAGACAGTAGATTCTCTTCTTAAGCTATTGCGAAAGCATTCCGTGGAACAAGGGAAGAGAAGCAGTGGTGGGGGTGGCAGCAGCAACAAGGACATCAGTTTTAACCATGTCAAAGAGAATGGTCCTTACGATGAAGGAAGAGGCTCAAGCTTTTTTGGACTAAGTCCCAATTTGAGGGAGAAGGCCCAAAGACCCGTATCAAATTTCCAACGTAGATCCCCCGTGCCTCGGGTGAAGTACCAACCAATTTACCCTGGGGAAAGTATTGTCAACTCGACCAATGGTATGAATTCAAAAGGTGTGAAACCTAATGGAACTGATACAGGTTCTCAACTGAAAGGAAAGGTATGGACTCGGCAAGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAAGGGAGGCAGAACAGGAGCCAGAGCCGGACCAAGAGTTCGAATTGGAACCAGAGGCTGAAACATATGATCTAGAGCATGAAGGTGATGAAATGGAGCCTGAACTTGTTAATTTATTAGGTGTGTCATCAGACGTCGATGACACGTTTGAGGATGATGTTAAAGACAATGAGGAATTTGCAAAGCATGGTGAACAAGAACATGAGGACTTGAACTCATTGAAACTTGCTGAACTGAGGGCGATTGCCAAATCTCGTAGTTTGAGAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCAATTGTTAAGCAACGGTCAGTAAGGATGTCATACTGGACAGGAACCTCTGGATTTAGGTTGTTTAGGTGTTTTTTTGTACTTATTTTTGTTGTGCTTATCAATCTGTTTGACTAGTTTTGAGTTAGAAATTGGTATTAGCTTTTTACAAACTCTTTCCCAGATTGTATATCAGGCTAATCTTCGCAGGTTCAGAGTACAAGTCAACAACAATCTCTTCTTTTAGTTTTTTCTCTTCTATTCAGACTCTTGTTCACTTATAGGAACCATTTTTTAAAGGGATTTTTATTGCTAACATGGTCCTCAAGCGTTTCCATCATGTTGCTCAGTGGGTGGGATTGATTTGAAAGGTTTGGAAGAATGATTGCTGTTTTTATGTGTTTGGTAAAAGAAAT ATGTCTCAAGCCATTCATCTTCTTCCTCACAACCCTACAGGCTTTGGACTGTCAGATAGCAGATGCATACCTTGCTCTGGAGTTTCAGGACGAGCAGCCTCGTTCTCTTTTCACTCTTTATGTGCTGAACATAGAATCAATGTACCAGTCAAATTTAGACCTCTAAACTGTACTTCGTTGGGGGAGTCTTTTACGTGCAAAGCCAGCTCAGGAGGTCACAGGAGAAACCCAGATTTTCCAAAGCAAAATAGGCATGGCTTCTCAAGAAGCAGAAATAGGCAAAATGAGGAGAGAGAGAGTCTTGACAATGTTGATGAATCTGATTTATTATTGTCTAAGAATGGACCATTACTTTCCATCTCTAGCACCCCAAAATCCCAGGCCACCGCTACCCCAGGACCAAGGGAAAAGGAAATTGTTGAACTTTTCAGAAAGGTTCAAGCTCAGCTTCGGGAGCGAGCAGCAATGAAAGAAGAGAAGAAAGTGGAAGCTCAAGGACAAACGAAAGGGAGTGAGACAGTAGATTCTCTTCTTAAGCTATTGCGAAAGCATTCCGTGGAACAAGGGAAGAGAAGCAGTGGTGGGGGTGGCAGCAGCAACAAGGACATCAGTTTTAACCATGTCAAAGAGAATGGTCCTTACGATGAAGGAAGAGGCTCAAGCTTTTTTGGACTAAGTCCCAATTTGAGGGAGAAGGCCCAAAGACCCGTATCAAATTTCCAACGTAGATCCCCCGTGCCTCGGGTGAAGTACCAACCAATTTACCCTGGGGAAAGTATTGTCAACTCGACCAATGGTATGAATTCAAAAGGTGTGAAACCTAATGGAACTGATACAGGTTCTCAACTGAAAGGAAAGGTATGGACTCGGCAAGAGTCGGAACGAGAGCACTGGGAAGAGCTGCAATCACAAAGGGAGGCAGAACAGGAGCCAGAGCCGGACCAAGAGTTCGAATTGGAACCAGAGGCTGAAACATATGATCTAGAGCATGAAGGTGATGAAATGGAGCCTGAACTTGTTAATTTATTAGGTGTGTCATCAGACGTCGATGACACGTTTGAGGATGATGTTAAAGACAATGAGGAATTTGCAAAGCATGGTGAACAAGAACATGAGGACTTGAACTCATTGAAACTTGCTGAACTGAGGGCGATTGCCAAATCTCGTAGTTTGAGAGGGTTTTCGAAGATGAAGAAGAGCGAGCTCGTGCAATTGTTAAGCAACGGTCAGTAA MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSLGESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSISSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEAQGQTKGSETVDSLLKLLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQRPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEREHWEELQSQREAEQEPEPDQEFELEPEAETYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQLLSNGQ
BLAST of CsGy3G021560.1 vs. NCBI nr
Match: XP_004151986.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KGN57903.1 hypothetical protein Csa_3G384780 [Cucumis sativus]) HSP 1 Score: 723.8 bits (1867), Expect = 3.3e-205 Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. NCBI nr
Match: XP_004151987.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 707.6 bits (1825), Expect = 2.5e-200 Identity = 405/410 (98.78%), Postives = 405/410 (98.78%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. NCBI nr
Match: XP_008447421.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X7 [Cucumis melo]) HSP 1 Score: 640.2 bits (1650), Expect = 4.8e-180 Identity = 376/415 (90.60%), Postives = 389/415 (93.73%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. NCBI nr
Match: XP_016900425.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis melo]) HSP 1 Score: 630.6 bits (1625), Expect = 3.8e-177 Identity = 376/429 (87.65%), Postives = 389/429 (90.68%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. NCBI nr
Match: XP_016900423.1 (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 628.2 bits (1619), Expect = 1.9e-176 Identity = 376/435 (86.44%), Postives = 389/435 (89.43%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TAIR10
Match: AT1G06190.1 (Rho termination factor) HSP 1 Score: 192.6 bits (488), Expect = 4.8e-49 Identity = 181/417 (43.41%), Postives = 227/417 (54.44%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TAIR10
Match: AT2G31150.1 (ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism) HSP 1 Score: 90.1 bits (222), Expect = 3.4e-18 Identity = 85/202 (42.08%), Postives = 104/202 (51.49%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. Swiss-Prot
Match: sp|Q94K75|RHON1_ARATH (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RHON1 PE=1 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 8.7e-48 Identity = 181/417 (43.41%), Postives = 227/417 (54.44%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. Swiss-Prot
Match: sp|Q8L4E7|BP73_ORYSJ (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.9e-26 Identity = 147/362 (40.61%), Postives = 206/362 (56.91%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TrEMBL
Match: tr|A0A0A0L7X8|A0A0A0L7X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G384780 PE=4 SV=1) HSP 1 Score: 723.8 bits (1867), Expect = 2.2e-205 Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TrEMBL
Match: tr|A0A1S3BHF2|A0A1S3BHF2_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X7 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1) HSP 1 Score: 640.2 bits (1650), Expect = 3.2e-180 Identity = 376/415 (90.60%), Postives = 389/415 (93.73%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TrEMBL
Match: tr|A0A1S4DXI1|A0A1S4DXI1_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X4 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1) HSP 1 Score: 630.6 bits (1625), Expect = 2.5e-177 Identity = 376/429 (87.65%), Postives = 389/429 (90.68%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TrEMBL
Match: tr|A0A1S4DWS1|A0A1S4DWS1_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1) HSP 1 Score: 628.2 bits (1619), Expect = 1.3e-176 Identity = 376/435 (86.44%), Postives = 389/435 (89.43%), Query Frame = 0
BLAST of CsGy3G021560.1 vs. TrEMBL
Match: tr|A0A1S3BIA8|A0A1S3BIA8_CUCME (rho-N domain-containing protein 1, chloroplastic isoform X6 OS=Cucumis melo OX=3656 GN=LOC103489870 PE=4 SV=1) HSP 1 Score: 626.3 bits (1614), Expect = 4.8e-176 Identity = 373/424 (87.97%), Postives = 387/424 (91.27%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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