CsGy3G021540 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	Chr3 : 19567848 .. 19568498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCTCCAGTGGTAGCAGCCATAATATCATCATCAACAACAATAACAACACCATCAACCACCAACAACCTGCACCAACCTCCTCTTCAAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTTGCCCTCTCACGTTGTAGCGGAGCTCATGTTCTTGAATTCCTCAGGTATCGAACAAAGATGTTTCTTTTAGATAATATAAAAAAAATTTCTCTCCCTTTGGTAGATATAACTAACACACGGTTAGTAAACCATGTGATTTTCTGTTTTGATAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGCTATTTGCCCTTTCTATGGACTGCCGAACCCTCCAGCGCCGTGTCCGTGTCCTCTTCGGCAGGCGTGGGGGAGCCTCGATGCGTTGGTTGGACGGCTTCGAGCAGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCAGTGAGATTGTATCTACGTGAGGTTCGTGATTTACAATCGAAGGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAACGCCCACCTTCTCAATTGCCTTTAACTCAACAAACAACTCATGGTGCATCTTCATGA

mRNA sequence

ATGGACTTCTCCAGTGGTAGCAGCCATAATATCATCATCAACAACAATAACAACACCATCAACCACCAACAACCTGCACCAACCTCCTCTTCAAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTTGCCCTCTCACGTTGTAGCGGAGCTCATGTTCTTGAATTCCTCAGGTATCGAACAAAGATGTTTCTTTTAGATAATATAAAAAAAATTTCTCTCCCTTTGGTAGATATAACTAACACACGGTTAGTAAACCATGTGATTTTCTGTTTTGATAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGCTATTTGCCCTTTCTATGGACTGCCGAACCCTCCAGCGCCGTGTCCGTGTCCTCTTCGGCAGGCGTGGGGGAGCCTCGATGCGTTGGTTGGACGGCTTCGAGCAGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCAGTGAGATTGTATCTACGTGAGGTTCGTGATTTACAATCGAAGGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAACGCCCACCTTCTCAATTGCCTTTAACTCAACAAACAACTCATGGTGCATCTTCATGA

Coding sequence (CDS)

ATGGACTTCTCCAGTGGTAGCAGCCATAATATCATCATCAACAACAATAACAACACCATCAACCACCAACAACCTGCACCAACCTCCTCTTCAAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTTGCCCTCTCACGTTGTAGCGGAGCTCATGTTCTTGAATTCCTCAGGTATCGAACAAAGATGTTTCTTTTAGATAATATAAAAAAAATTTCTCTCCCTTTGGTAGATATAACTAACACACGGTTAGTAAACCATGTGATTTTCTGTTTTGATAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGCTATTTGCCCTTTCTATGGACTGCCGAACCCTCCAGCGCCGTGTCCGTGTCCTCTTCGGCAGGCGTGGGGGAGCCTCGATGCGTTGGTTGGACGGCTTCGAGCAGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCAGTGAGATTGTATCTACGTGAGGTTCGTGATTTACAATCGAAGGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAACGCCCACCTTCTCAATTGCCTTTAACTCAACAAACAACTCATGGTGCATCTTCATGA

Protein sequence

MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLVNHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS

Homology

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BLAST of CsGy3G021540 vs. NCBI nr
Match: XP_004152053.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_3G383760 [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 2.2e-67
Identity = 141/177 (79.66%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 99

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 100 --------RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 217
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS
Sbjct: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 180

[Close]

BLAST of CsGy3G021540 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 5.0e-67
Identity = 140/177 (79.10%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 99

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 100 --------RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 217
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQTTHGASS
Sbjct: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180

[Close]

BLAST of CsGy3G021540 vs. NCBI nr
Match: XP_022155631.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155633.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia])

HSP 1 Score: 253.8 bits (647), Expect = 5.1e-64
Identity = 135/176 (76.70%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 35  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 94

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVH  ICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 95  --------RYLDQFGKTKVHAPICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 154

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGAS 216
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL QQT HGA+
Sbjct: 155 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPHGAA 174

[Close]

BLAST of CsGy3G021540 vs. NCBI nr
Match: XP_022931179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 5.9e-60
Identity = 128/167 (76.65%), Postives = 129/167 (77.25%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 44  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 103

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT ICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 104 --------RYLDQFGKTKVHTPICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 163

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 207
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 164 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174

[Close]

BLAST of CsGy3G021540 vs. NCBI nr
Match: XP_023532602.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 5.9e-60
Identity = 128/167 (76.65%), Postives = 129/167 (77.25%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 37  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 96

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT ICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 97  --------RYLDQFGKTKVHTPICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 156

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 207
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 157 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 167

[Close]

BLAST of CsGy3G021540 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-52
Identity = 102/155 (65.81%), Postives = 107/155 (69.03%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 54  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL---------------------------- 113

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT +CPF+G PNPPA     LRQAWGSLDAL+GRLRAAFEE
Sbjct: 114 --------RYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEE 172

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE 195
           NGG PE NPFGARAVRLYLREVRD Q+KARGISYE
Sbjct: 174 NGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172

[Close]

BLAST of CsGy3G021540 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-50
Identity = 105/155 (67.74%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 60  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL---------------------------- 119

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT IC FYG P    XXXXXLRQAWGSLDAL+GRLRAAFEE
Sbjct: 120 --------RYLDQFGKTKVHTNICHFYGHPXXXXXXXXXLRQAWGSLDALIGRLRAAFEE 178

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE 195
           NGGKPE NPFGARAVRLYLREVRD+QSKARG+SYE
Sbjct: 180 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178

[Close]

BLAST of CsGy3G021540 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 190.7 bits (483), Expect = 9.7e-49
Identity = 101/156 (64.74%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TF QYL NHRPPL+L  CSGAHVLEFL                            
Sbjct: 31  RRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFL---------------------------- 90

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVH   C F+GLPNPPAXXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 91  --------RYLDQFGKTKVHHQNCAFFGLPNPPAXXXXXLRQAWGSLDALIGRLRAAYEE 150

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 196
           NGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEK
Sbjct: 151 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEK 150

[Close]

BLAST of CsGy3G021540 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-48
Identity = 95/164 (57.93%), Postives = 111/164 (67.68%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TF QYL NH+PPLALSRCSGAHV+EFL                            
Sbjct: 37  RRDWNTFLQYLKNHKPPLALSRCSGAHVIEFL---------------------------- 96

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   +YLDQFGKTKVH A CP++G   PP+     L+QAWGSLDAL+GRLRAA+EE
Sbjct: 97  --------KYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEE 156

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPS 203
           NGG+P++NPF ARAVR+YLREVR+ Q+KARGI YE KKRKRPP+
Sbjct: 157 NGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRPPT 164

[Close]

BLAST of CsGy3G021540 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 188.3 bits (477), Expect = 4.8e-48
Identity = 98/160 (61.25%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TF QYL NH PPL+L+ CSGAHVL+FL                            
Sbjct: 39  RRDWNTFCQYLRNHHPPLSLASCSGAHVLDFL---------------------------- 98

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVH   C F+GLPNPPAXXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 99  --------RYLDQFGKTKVHHQNCAFFGLPNPPAXXXXXLRQAWGSLDALIGRLRAAYEE 158

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR 200
           NGG PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR
Sbjct: 159 NGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKR 162

[Close]

BLAST of CsGy3G021540 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-51
Identity = 102/155 (65.81%), Postives = 107/155 (69.03%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 54  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL---------------------------- 113

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT +CPF+G PNPPA     LRQAWGSLDAL+GRLRAAFEE
Sbjct: 114 --------RYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEE 172

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE 195
           NGG PE NPFGARAVRLYLREVRD Q+KARGISYE
Sbjct: 174 NGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172

[Close]

BLAST of CsGy3G021540 vs. Swiss-Prot
Match: sp|O82268|LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.4e-49
Identity = 105/155 (67.74%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 60  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL---------------------------- 119

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT IC FYG P    XXXXXLRQAWGSLDAL+GRLRAAFEE
Sbjct: 120 --------RYLDQFGKTKVHTNICHFYGHPXXXXXXXXXLRQAWGSLDALIGRLRAAFEE 178

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE 195
           NGGKPE NPFGARAVRLYLREVRD+QSKARG+SYE
Sbjct: 180 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178

[Close]

BLAST of CsGy3G021540 vs. Swiss-Prot
Match: sp|A2XAV5|G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-47
Identity = 100/155 (64.52%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 86  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL---------------------------- 145

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   +Y+DQFGKTKVHT +CPFYG PN   XXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 146 --------KYMDQFGKTKVHTPVCPFYGHPNXXXXXXXXLRQAWGSLDALIGRLRAAYEE 204

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE 195
           NGG PE NPFGARAVRLYLREVR+ Q++ARGISYE
Sbjct: 206 NGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204

[Close]

BLAST of CsGy3G021540 vs. Swiss-Prot
Match: sp|Q6K5X1|G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-47
Identity = 100/155 (64.52%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 86  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL---------------------------- 145

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   +Y+DQFGKTKVHT +CPFYG PN   XXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 146 --------KYMDQFGKTKVHTPVCPFYGHPNXXXXXXXXLRQAWGSLDALIGRLRAAYEE 204

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE 195
           NGG PE NPFGARAVRLYLREVR+ Q++ARGISYE
Sbjct: 206 NGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204

[Close]

BLAST of CsGy3G021540 vs. Swiss-Prot
Match: sp|Q6NNI3|LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-47
Identity = 101/156 (64.74%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TF QYL NHRPPL+L  CSGAHVLEFL                            
Sbjct: 31  RRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFL---------------------------- 90

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVH   C F+GLPNPPAXXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 91  --------RYLDQFGKTKVHHQNCAFFGLPNPPAXXXXXLRQAWGSLDALIGRLRAAYEE 150

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 196
           NGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEK
Sbjct: 151 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEK 150

[Close]

BLAST of CsGy3G021540 vs. TrEMBL
Match: tr|A0A0A0L7E1|A0A0A0L7E1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.5e-67
Identity = 141/177 (79.66%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 99

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 100 --------RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 217
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS
Sbjct: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 180

[Close]

BLAST of CsGy3G021540 vs. TrEMBL
Match: tr|A0A1S3BGU6|A0A1S3BGU6_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.3e-67
Identity = 140/177 (79.10%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL                            
Sbjct: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL---------------------------- 99

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE
Sbjct: 100 --------RYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGASS 217
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQTTHGASS
Sbjct: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGASS 180

[Close]

BLAST of CsGy3G021540 vs. TrEMBL
Match: tr|A0A2I4HVR1|A0A2I4HVR1_9ROSI (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Juglans regia OX=51240 GN=LOC109021952 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.2e-54
Identity = 122/177 (68.93%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 49  RRDWNTFGQYLMNHRPPLSLSRCSGAHVLEFL---------------------------- 108

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTKVHT ICPFYGLPNPPAXXXXXLRQAWGSLDAL+GRLRAAFEE
Sbjct: 109 --------RYLDQFGKTKVHTPICPFYGLPNPPAXXXXXLRQAWGSLDALIGRLRAAFEE 168

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLTQQTTHGAS 216
           NGG+PE NPFGARAVRLYLREVRDLQSKARG+SYE KKRKR   Q P  Q    GAS
Sbjct: 169 NGGQPEVNPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRSRQQFPPGQLPPPGAS 189

[Close]

BLAST of CsGy3G021540 vs. TrEMBL
Match: tr|M1ANL4|M1ANL4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596568 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.3e-54
Identity = 117/164 (71.34%), Postives = 122/164 (74.39%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 34  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFL---------------------------- 93

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTK+HT ICPFYGLPNPPAXXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 94  --------RYLDQFGKTKIHTPICPFYGLPNPPAXXXXXLRQAWGSLDALIGRLRAAYEE 153

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPS 203
           NGGK E NPFGARAVRLYLREVRDLQSKARG+SYE KKRKRPPS
Sbjct: 154 NGGKSEMNPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPS 161

[Close]

BLAST of CsGy3G021540 vs. TrEMBL
Match: tr|K4CSI9|K4CSI9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101262247 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53
Identity = 113/164 (68.90%), Postives = 121/164 (73.78%), Query Frame = 0


Query: 40  RRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYRTKMFLLDNIKKISLPLVDITNTRLV 99
           RRDW TFGQYL NHRPPL+LSRCSGAHVLEFL                            
Sbjct: 35  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFL---------------------------- 94

Query: 100 NHVIFCFDRYLDQFGKTKVHTAICPFYGLPNPPAXXXXXLRQAWGSLDALVGRLRAAFEE 159
                   RYLDQFGKTK+HT ICPFYGLPNPPAXXXXXLRQAWGSLDAL+GRLRAA+EE
Sbjct: 95  --------RYLDQFGKTKIHTLICPFYGLPNPPAXXXXXLRQAWGSLDALIGRLRAAYEE 154

Query: 160 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQ 204
           NGG PE NPFG RAVRLYLREVRDLQSKARG+SYEKK+++ PSQ
Sbjct: 155 NGGNPEMNPFGTRAVRLYLREVRDLQSKARGVSYEKKKRKRPSQ 162

The following BLAST results are available for this feature:

BLAST of CsGy3G021540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152053.1	2.2e-67	79.66	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN5790...	[more]
XP_008447415.1	5.0e-67	79.10	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
XP_022155631.1	5.1e-64	76.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155...	[more]
XP_022931179.1	5.9e-60	76.65	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata]	[more]
XP_023532602.1	5.9e-60	76.65	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G021540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	1.4e-52	65.81	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.0e-50	67.74	Protein of unknown function (DUF640)	[more]
AT5G28490.1	9.7e-49	64.74	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.2e-48	57.93	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.8e-48	61.25	Protein of unknown function (DUF640)	[more]

BLAST of CsGy3G021540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW68\|LSH4_ARATH	2.6e-51	65.81	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|O82268\|LSH3_ARATH	5.4e-49	67.74	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XAV5\|G1L6_ORYSI	1.0e-47	64.52	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
sp\|Q6K5X1\|G1L6_ORYSJ	1.0e-47	64.52	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
sp\|Q6NNI3\|LSH1_ARATH	1.7e-47	64.74	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CsGy3G021540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7E1\|A0A0A0L7E1_CUCSA	1.5e-67	79.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=4 SV=1	[more]
tr\|A0A1S3BGU6\|A0A1S3BGU6_CUCME	3.3e-67	79.10	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4HVR1\|A0A2I4HVR1_9ROSI	3.2e-54	68.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|M1ANL4\|M1ANL4_SOLTU	9.3e-54	71.34	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596568 PE=4 SV=1	[more]
tr\|K4CSI9\|K4CSI9_SOLLC	2.1e-53	68.90	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101262247 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021540.1	CsGy3G021540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 24..76 e-value: 1.2E-19 score: 70.6 coord: 101..183 e-value: 2.9E-40 score: 137.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..197 score: 73.954
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..216
None	No IPR available	PANTHER	PTHR31165:SF36	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	coord: 14..74 coord: 102..209
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 14..74 coord: 102..209

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G021540	Cla005972	Watermelon (97103) v1	cgybwmB206
CsGy3G021540	Csa3G383760	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021540	MELO3C012877	Melon (DHL92) v3.5.1	cgybmeB176
CsGy3G021540	ClCG07G001100	Watermelon (Charleston Gray)	cgybwcgB239
CsGy3G021540	CSPI03G22470	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G021540	CmaCh19G000930	Cucurbita maxima (Rimu)	cgybcmaB383
CsGy3G021540	CmaCh02G017430	Cucurbita maxima (Rimu)	cgybcmaB392
CsGy3G021540	CmoCh19G001050	Cucurbita moschata (Rifu)	cgybcmoB355
CsGy3G021540	CmoCh02G017850	Cucurbita moschata (Rifu)	cgybcmoB363
CsGy3G021540	Lsi05G010230	Bottle gourd (USVL1VR-Ls)	cgyblsiB202
CsGy3G021540	Cp4.1LG05g01250	Cucurbita pepo (Zucchini)	cgybcpeB433
CsGy3G021540	Cp4.1LG15g00860	Cucurbita pepo (Zucchini)	cgybcpeB338
CsGy3G021540	MELO3C012877.2	Melon (DHL92) v3.6.1	cgybmedB177
CsGy3G021540	CsaV3_3G022180	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021540	Cla97C07G129380	Watermelon (97103) v2	cgybwmbB232
CsGy3G021540	Bhi05G000145	Wax gourd	cgybwgoB294
CsGy3G021540	Carg16881	Silver-seed gourd	carcgybB0747
CsGy3G021540	Carg08962	Silver-seed gourd	carcgybB0771

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021540	Bottle gourd (USVL1VR-Ls)	cgyblsiB212