CmoCh19G001050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G001050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Light-dependent short hypocotyls 1
Location	Cmo_Chr19 : 602741 .. 603295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATAATCCCTGAATTTGAAGGTCTCAACAACACCCAACAATTTGGAGTGTCAAATCTTCAAAATTTAGGTATTGGGTCATCTTCATCTTCATCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTTAAAAATCACCGACCGCCATTAGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGTAAGACCAAAGTGCATACTCCGATCTGCCCTTTCTATGGCCATCCTAACCCACCAGCTCCATGTCCTTGCCCTCTACGCCAAGCTTGGGGTAGCCTTGATGCCCTTATTGGCCGCCTTCGAGCTGCCTTTGAAGAGAATGGTGGGATGCCTGAAGCTAACCCTTTTGGTGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGAGGAATTAGCTATGAAAAGAAGAAACGAAAGCGCCCTCAACAACAACGACAACAACAACAGCTCCCTCAACCTTCCAATGGAGCTTAA

mRNA sequence

ATGGATTCAATAATCCCTGAATTTGAAGGTATTGGGTCATCTTCATCTTCATCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTTAAAAATCACCGACCGCCATTAGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGTAAGACCAAAGTGCATACTCCGATCTGCCCTTTCTATGGCCATCCTAACCCACCAGCTCCATGTCCTTGCCCTCTACGCCAAGCTTGGGGTAGCCTTGATGCCCTTATTGGCCGCCTTCGAGCTGCCTTTGAAGAGAATGGTGGGATGCCTGAAGCTAACCCTTTTGGTGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGAGGAATTAGCTATGAAAAGAAGAAACGAAAGCGCCCTCAACAACAACGACAACAACAACAGCTCCCTCAACCTTCCAATGGAGCTTAA

Coding sequence (CDS)

ATGGATTCAATAATCCCTGAATTTGAAGGTATTGGGTCATCTTCATCTTCATCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTTAAAAATCACCGACCGCCATTAGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGTAAGACCAAAGTGCATACTCCGATCTGCCCTTTCTATGGCCATCCTAACCCACCAGCTCCATGTCCTTGCCCTCTACGCCAAGCTTGGGGTAGCCTTGATGCCCTTATTGGCCGCCTTCGAGCTGCCTTTGAAGAGAATGGTGGGATGCCTGAAGCTAACCCTTTTGGTGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGAGGAATTAGCTATGAAAAGAAGAAACGAAAGCGCCCTCAACAACAACGACAACAACAACAGCTCCCTCAACCTTCCAATGGAGCTTAA

Homology

[Close]

BLAST of CmoCh19G001050 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-71
Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 13  SSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 72
           SS S+++SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT 
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 73  ICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREV 132
           IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 133 RDLQSKARGISYEKKKRKRP 153
           RD+QSKARG+SYEKKKRKRP
Sbjct: 166 RDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of CmoCh19G001050 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-70
Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 13  SSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 72
           SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 73  ICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREV 132
           +CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 133 RDLQSKARGISYEKKKRKRP 153
           R+ Q++ARGISYEKKKRK+P
Sbjct: 192 RETQARARGISYEKKKRKKP 211

[Close]

BLAST of CmoCh19G001050 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-70
Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 13  SSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 72
           SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 73  ICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREV 132
           +CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 133 RDLQSKARGISYEKKKRKRP 153
           R+ Q++ARGISYEKKKRK+P
Sbjct: 192 RETQARARGISYEKKKRKKP 211

[Close]

BLAST of CmoCh19G001050 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 9.5e-70
Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 1


Query: 12  GSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 71
           G S ++  SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT
Sbjct: 39  GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 98

Query: 72  PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLRE 131
            +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLRE
Sbjct: 99  HLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLRE 158

Query: 132 VRDLQSKARGISYEKKKRKRP 153
           VRD Q+KARGISYEKKKRKRP
Sbjct: 159 VRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CmoCh19G001050 vs. Swiss-Prot
Match: G1L4_ORYSJ (Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-67
Identity = 119/148 (80.41%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 11  IGSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVH 70
           +G+ +  S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFLRYLDQFGKTKVH
Sbjct: 31  MGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVH 90

Query: 71  TPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLR 130
           T  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF ARAVRLYLR
Sbjct: 91  TAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLR 150

Query: 131 EVRDLQSKARGISYEKKKRKRPQQQRQQ 159
           EVR+ Q++ARG+SYEKKKRK+PQQQ+ Q
Sbjct: 151 EVREHQARARGVSYEKKKRKKPQQQQLQ 178

[Close]

BLAST of CmoCh19G001050 vs. TrEMBL
Match: A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.0e-78
Identity = 154/193 (79.79%), Postives = 158/193 (81.87%), Query Frame = 1


Query: 1   MDSIIPEFEGIG--------------------------SSSSSSNSRYENQKRRDWNTFC 60
           MDSI+ EFE +                           SSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 168
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP  
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP-- 180

[Close]

BLAST of CmoCh19G001050 vs. TrEMBL
Match: A0A067EZ94_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046561mg PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-74
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 1


Query: 6   PEFEGIGSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 65
           P       +++SS+SRYENQKRRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFG
Sbjct: 37  PPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFG 96

Query: 66  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAV 125
           KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAV
Sbjct: 97  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAV 156

Query: 126 RLYLREVRDLQSKARGISYEKKKRKRP--QQQRQQQQLP 163
           RLYLREVRD+QSKARGISYEKKKRKRP  QQQ+QQQQ+P
Sbjct: 157 RLYLREVRDVQSKARGISYEKKKRKRPPQQQQQQQQQIP 195

[Close]

BLAST of CmoCh19G001050 vs. TrEMBL
Match: A0A0D2Q4B9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G254200 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-74
Identity = 143/160 (89.38%), Postives = 148/160 (92.50%), Query Frame = 1


Query: 12  GSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 71
           G+SSSS++SRYENQKRRDWNTF QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT
Sbjct: 27  GTSSSSTSSRYENQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 86

Query: 72  PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLRE 131
           PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLRE
Sbjct: 87  PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLRE 146

Query: 132 VRDLQSKARGISYEKKKRKRPQQQR---QQQQLPQPSNGA 169
           VRDLQSKARGISYEKKKRKRP  Q+    Q Q+P P  GA
Sbjct: 147 VRDLQSKARGISYEKKKRKRPPPQQIPSLQLQVPPPPPGA 186

[Close]

BLAST of CmoCh19G001050 vs. TrEMBL
Match: A0A072U2M0_MEDTR (G1-like protein OS=Medicago truncatula GN=MTR_7g097030 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.5e-74
Identity = 140/155 (90.32%), Postives = 146/155 (94.19%), Query Frame = 1


Query: 14  SSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPI 73
           +S +S+SRYENQKRRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPI
Sbjct: 57  NSPNSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPI 116

Query: 74  CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVR 133
           CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVR
Sbjct: 117 CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVR 176

Query: 134 DLQSKARGISYEKKKRKRPQQQRQQQQLPQPSNGA 169
           DLQSKARGISYEKKKRKRP  Q QQQQ+P P+ GA
Sbjct: 177 DLQSKARGISYEKKKRKRPPPQ-QQQQVPPPAQGA 210

[Close]

BLAST of CmoCh19G001050 vs. TrEMBL
Match: V7CWH8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G161400g PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.4e-74
Identity = 140/157 (89.17%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 12  GSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 71
           GS+S +S+SRYENQKRRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT
Sbjct: 39  GSTSITSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 98

Query: 72  PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLRE 131
           PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLRE
Sbjct: 99  PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLRE 158

Query: 132 VRDLQSKARGISYEKKKRKRPQQQRQQQQLPQPSNGA 169
           VRDLQSKARGISYEKKKRKRP  Q+Q   L  P  GA
Sbjct: 159 VRDLQSKARGISYEKKKRKRPPPQQQPMPLSLPPPGA 195

[Close]

BLAST of CmoCh19G001050 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 270.4 bits (690), Expect = 7.5e-73
Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 13  SSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 72
           SS S+++SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT 
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 73  ICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREV 132
           IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 133 RDLQSKARGISYEKKKRKRP 153
           RD+QSKARG+SYEKKKRKRP
Sbjct: 166 RDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of CmoCh19G001050 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 264.2 bits (674), Expect = 5.4e-71
Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 1


Query: 12  GSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 71
           G S ++  SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT
Sbjct: 39  GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 98

Query: 72  PICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLRE 131
            +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLRE
Sbjct: 99  HLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLRE 158

Query: 132 VRDLQSKARGISYEKKKRKRP 153
           VRD Q+KARGISYEKKKRKRP
Sbjct: 159 VRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CmoCh19G001050 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 247.7 bits (631), Expect = 5.2e-66
Identity = 122/155 (78.71%), Postives = 135/155 (87.10%), Query Frame = 1


Query: 18  SNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFY 77
           S+SRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C F+
Sbjct: 22  SSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFF 81

Query: 78  GHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQS 137
           G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+
Sbjct: 82  GLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQA 141

Query: 138 KARGISYEKKK----RKRPQQQ-----RQQQQLPQ 164
           KARG+SYEKK+    R++PQ Q     +QQQQ PQ
Sbjct: 142 KARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQPQ 176

[Close]

BLAST of CmoCh19G001050 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 241.1 bits (614), Expect = 4.9e-64
Identity = 110/140 (78.57%), Postives = 126/140 (90.00%), Query Frame = 1


Query: 13  SSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 72
           SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH  
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 73  ICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREV 132
            CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 133 RDLQSKARGISYEKKKRKRP 153
           R+ Q+KARGI YEKKKRKRP
Sbjct: 143 RESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of CmoCh19G001050 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 237.3 bits (604), Expect = 7.0e-63
Identity = 114/163 (69.94%), Postives = 133/163 (81.60%), Query Frame = 1


Query: 14  SSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPI 73
           SS  S+SRYENQKRRDWNTFCQYL+NH PPL+L+ CSGAHVL+FLRYLDQFGKTKVH   
Sbjct: 26  SSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQN 85

Query: 74  CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVR 133
           C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE +PFG+R+VR++LREVR
Sbjct: 86  CAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVR 145

Query: 134 DLQSKARGISYEKKKRK---------RPQQQRQQQQLPQPSNG 168
           D Q+K+RG+SYEKK+++         +PQ Q    Q PQ   G
Sbjct: 146 DFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQPQQEQG 188

[Close]

BLAST of CmoCh19G001050 vs. NCBI nr
Match: gi|700202769|gb|KGN57902.1| (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 154/193 (79.79%), Postives = 158/193 (81.87%), Query Frame = 1


Query: 1   MDSIIPEFEGIG--------------------------SSSSSSNSRYENQKRRDWNTFC 60
           MDSI+ EFE +                           SSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 168
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP  
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP-- 180

[Close]

BLAST of CmoCh19G001050 vs. NCBI nr
Match: gi|659093194|ref|XP_008447416.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 154/193 (79.79%), Postives = 158/193 (81.87%), Query Frame = 1


Query: 1   MDSIIPEFEGIG--------------------------SSSSSSNSRYENQKRRDWNTFC 60
           MDSI+ EFE +                           SSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 168
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP  
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP-- 180

[Close]

BLAST of CmoCh19G001050 vs. NCBI nr
Match: gi|778681005|ref|XP_011651439.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.6e-77
Identity = 151/189 (79.89%), Postives = 156/189 (82.54%), Query Frame = 1


Query: 1   MDSIIPEFEGIG--------------------------SSSSSSNSRYENQKRRDWNTFC 60
           MDSI+ EFE +                           SSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 164
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]

BLAST of CmoCh19G001050 vs. NCBI nr
Match: gi|778681002|ref|XP_004152052.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.1e-77
Identity = 153/192 (79.69%), Postives = 157/192 (81.77%), Query Frame = 1


Query: 1   MDSIIPEFEGIG--------------------------SSSSSSNSRYENQKRRDWNTFC 60
           MDSI+ EFE +                           SSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 162
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]

BLAST of CmoCh19G001050 vs. NCBI nr
Match: gi|641841562|gb|KDO60474.1| (hypothetical protein CISIN_1g046561mg [Citrus sinensis])

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 1


Query: 6   PEFEGIGSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 65
           P       +++SS+SRYENQKRRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFG
Sbjct: 37  PPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFG 96

Query: 66  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAV 125
           KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAV
Sbjct: 97  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAV 156

Query: 126 RLYLREVRDLQSKARGISYEKKKRKRP--QQQRQQQQLP 163
           RLYLREVRD+QSKARGISYEKKKRKRP  QQQ+QQQQ+P
Sbjct: 157 RLYLREVRDVQSKARGISYEKKKRKRPPQQQQQQQQQIP 195

The following BLAST results are available for this feature:

BLAST of CmoCh19G001050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH3_ARATH	1.3e-71	90.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ...	[more]
G1L6_ORYSJ	1.9e-70	87.86	Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1	[more]
G1L6_ORYSI	1.9e-70	87.86	Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1	[more]
LSH4_ARATH	9.5e-70	87.94	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L4_ORYSJ	2.6e-67	80.41	Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2	[more]

BLAST of CmoCh19G001050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB62_CUCSA	1.0e-78	79.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1	[more]
A0A067EZ94_CITSI	1.2e-74	88.05	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046561mg PE=4 SV=1	[more]
A0A0D2Q4B9_GOSRA	1.2e-74	89.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G254200 PE=4 SV=1	[more]
A0A072U2M0_MEDTR	1.5e-74	90.32	G1-like protein OS=Medicago truncatula GN=MTR_7g097030 PE=4 SV=1	[more]
V7CWH8_PHAVU	3.4e-74	89.17	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G161400g PE=4 SV=1	[more]

BLAST of CmoCh19G001050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31160.1	7.5e-73	90.71	Protein of unknown function (DUF640)	[more]
AT3G23290.2	5.4e-71	87.94	Protein of unknown function (DUF640)	[more]
AT5G28490.1	5.2e-66	78.71	Protein of unknown function (DUF640)	[more]
AT1G07090.1	4.9e-64	78.57	Protein of unknown function (DUF640)	[more]
AT3G04510.1	7.0e-63	69.94	Protein of unknown function (DUF640)	[more]

BLAST of CmoCh19G001050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202769\|gb\|KGN57902.1\|	1.5e-78	79.79	hypothetical protein Csa_3G383780 [Cucumis sativus]	[more]
gi\|659093194\|ref\|XP_008447416.1\|	1.5e-78	79.79	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
gi\|778681005\|ref\|XP_011651439.1\|	1.6e-77	79.89	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu...	[more]
gi\|778681002\|ref\|XP_004152052.2\|	2.1e-77	79.69	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu...	[more]
gi\|641841562\|gb\|KDO60474.1\|	1.7e-74	88.05	hypothetical protein CISIN_1g046561mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0010492	maintenance of shoot apical meristem identity
biological_process	GO:0010014	meristem initiation
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
biological_process	GO:0048441	petal development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0048834	specification of petal number
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G001050.1	CmoCh19G001050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 14..134 score: 8.5
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 21..148 score: 84
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 11..167 score: 3.2E
None	No IPR available	PANTHER	PTHR31165:SF13	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 11..167 score: 3.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G001050	Cucsa.053670	Cucumber (Gy14) v1	cgycmoB0059
CmoCh19G001050	CmaCh02G017430	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G001050	CmaCh19G000930	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G001050	Cla021516	Watermelon (97103) v1	cmowmB489
CmoCh19G001050	Cla005972	Watermelon (97103) v1	cmowmB485
CmoCh19G001050	Csa3G383760	Cucumber (Chinese Long) v2	cmocuB506
CmoCh19G001050	MELO3C012877	Melon (DHL92) v3.5.1	cmomeB461
CmoCh19G001050	ClCG07G001100	Watermelon (Charleston Gray)	cmowcgB466
CmoCh19G001050	CSPI03G22470	Wild cucumber (PI 183967)	cmocpiB512
CmoCh19G001050	Lsi05G017360	Bottle gourd (USVL1VR-Ls)	cmolsiB471
CmoCh19G001050	Lsi05G010230	Bottle gourd (USVL1VR-Ls)	cmolsiB470
CmoCh19G001050	Cp4.1LG05g01250	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G001050	Cp4.1LG15g00860	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G001050	MELO3C012877.2	Melon (DHL92) v3.6.1	cmomedB532
CmoCh19G001050	CsaV3_3G012030	Cucumber (Chinese Long) v3	cmocucB0606
CmoCh19G001050	CsaV3_3G022180	Cucumber (Chinese Long) v3	cmocucB0604
CmoCh19G001050	Cla97C07G129380	Watermelon (97103) v2	cmowmbB521
CmoCh19G001050	Cla97C05G085040	Watermelon (97103) v2	cmowmbB517
CmoCh19G001050	Bhi05G000145	Wax gourd	cmowgoB0654
CmoCh19G001050	Bhi01G000519	Wax gourd	cmowgoB0639
CmoCh19G001050	CsGy3G021540	Cucumber (Gy14) v2	cgybcmoB355
CmoCh19G001050	Carg16881	Silver-seed gourd	carcmoB1021
CmoCh19G001050	Carg08962	Silver-seed gourd	carcmoB1055

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G001050	CmoCh02G017850	Cucurbita moschata (Rifu)	cmocmoB387

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G001050	Cucumber (Chinese Long) v3	cmocucB0595
CmoCh19G001050	Watermelon (97103) v2	cmowmbB520
CmoCh19G001050	Cucurbita moschata (Rifu)	cmocmoB207
CmoCh19G001050	Cucurbita moschata (Rifu)	cmocmoB300
CmoCh19G001050	Cucurbita moschata (Rifu)	cmocmoB397
CmoCh19G001050	Cucurbita moschata (Rifu)	cmocmoB402
CmoCh19G001050	Cucumber (Gy14) v1	cgycmoB0710
CmoCh19G001050	Cucumber (Gy14) v1	cgycmoB1056
CmoCh19G001050	Cucurbita maxima (Rimu)	cmacmoB357
CmoCh19G001050	Cucurbita maxima (Rimu)	cmacmoB817
CmoCh19G001050	Cucurbita maxima (Rimu)	cmacmoB907
CmoCh19G001050	Wild cucumber (PI 183967)	cmocpiB503
CmoCh19G001050	Wild cucumber (PI 183967)	cmocpiB513
CmoCh19G001050	Cucumber (Chinese Long) v2	cmocuB497
CmoCh19G001050	Cucumber (Chinese Long) v2	cmocuB509
CmoCh19G001050	Melon (DHL92) v3.5.1	cmomeB467
CmoCh19G001050	Melon (DHL92) v3.5.1	cmomeB474
CmoCh19G001050	Watermelon (Charleston Gray)	cmowcgB463
CmoCh19G001050	Watermelon (Charleston Gray)	cmowcgB465
CmoCh19G001050	Watermelon (97103) v1	cmowmB500
CmoCh19G001050	Cucurbita pepo (Zucchini)	cmocpeB486
CmoCh19G001050	Cucurbita pepo (Zucchini)	cmocpeB491
CmoCh19G001050	Cucurbita pepo (Zucchini)	cmocpeB507
CmoCh19G001050	Bottle gourd (USVL1VR-Ls)	cmolsiB449
CmoCh19G001050	Cucumber (Gy14) v2	cgybcmoB206
CmoCh19G001050	Cucumber (Gy14) v2	cgybcmoB357
CmoCh19G001050	Melon (DHL92) v3.6.1	cmomedB539
CmoCh19G001050	Melon (DHL92) v3.6.1	cmomedB546
CmoCh19G001050	Silver-seed gourd	carcmoB1286
CmoCh19G001050	Silver-seed gourd	carcmoB1449