CsGy3G020620 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G020620
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein ODORANT1
Location	Chr3 : 17652965 .. 17655515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTGTAAAAACTTGATCTCTTATAAATTTTGATTCCTTTTCAGTTTTCTAAAACAAACCCTACCATTACACGTAAAATAAAAAACACAGAAAACAAAACAATAAAAATAATATTTTCTTAAGAAAAAAGGGGTTTAGAGGGAGGGGGAGAGAGAAAGAGTGTGTGTGCGTAATGATATATAAATGTAGGTAGTGGTGGGCATATTATTATTCCATTCACGATCGTTTATCTTCCAAAAGAGTGTGTGTAAAGAAAGAATATATATATATAGAAAAAATTAGAAAGGAAAGAGGTAGAAAAGATGGGAAGACAGCCATGTTGTGAGAAAGTAGGGTTGAAGAAAGGGCCATGGACAAGTGAAGAAGACAAGAAGCTAATAAACTTCATAGTAACAAATGGTCAGTCATGTTGTTGGAGAGCTGTTCCTAAACTTGCAGGTCTCCTCAGATGTGGTAAAAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCTGATCTTAAAAGAGGCCTTCTCTCTGATTTTGAAGAGAAAATGGTCATCGATCTCCATGCTCAACTTGGAAACAGGTCCCTTCCTCTCTCTTTCTCCCTATCTTCTTCTTCTTCTTCGTCATCAACTTAATTTTTCTTTCTCTTCCCATCTCCTCATCTCATTTTTACTCTTTTACTCTTCTTCCCATCAAATCTTACTATTTAATTAACTAACCATTCTCTTTTTCTCTTTTTCTCTTTTTCGTTTTCGAAAATTATTATGCCTACATAAATTCTAACTACTATTTATGGCTTTCTACTACCTATATTATATTTTATATTTTATATTTTATGAGTGTTTTTAAAACCAAACAAATTTCCAAAATTTAACTTTATCTGAAATGCCAAATAAAAATCAAATTCTTCTCATTTTTTCCACTTTCTTCGTTGATTTCCCAAGATAATCTCTTGATTTTTCGGCAATATTTTAGTTGATTTTTTAAAAGAGAGGTAATTAGTTTTTCTCTTCTTTTTCTTTTTCTTTTTGGCTTTCGATTTTGGAAACAAATTATATTTCTTTTATATTTGGGAGGTTTTGAGTAAGAAGGTAAACTAAATACATTTTATTTTCTTTTTCAGATATTATTTTAACAGTCGTTTGCTAACCTTATTATTTTAAAACAATTAATTCTTCTTTGTTAGGAAAAGTAGAAGAGAAATTTTTGTTTTCTTTAAAAAAACCAGTAATTTAATTTTCAAGTTTTGATTTGATTTCTCAAAATATATTAATAAAGGTAGATAACAAAATAAAAATTAACGTTAAATAAATGTTTATAGATTTATCCTTACAAAAATAGCAAAAAAATTTATGATAAATTTCTAAATTTCAAAAATAACAATTTAAAAGTCGATAAACCTGTGATTACCGTTTGATAGCCCTTTCATAATCTTAAGATTACGGTCTGATATGATTAATTTTGTCATATTTATAATATGCAAAAAAAATAGTTGTTTTTTTTTTAAATGTTTTTGTGTGCAATTTTTCTTATGGATAAAAAAACTGTTTATATTCTATTAATTTTTAGTTTTCTGTTTCTTTGAATTAAAAAATAGTTAATGTCAGTAGAAACTAAAATTGTTAATGTTTAAAATGAAACATCTATTTACACAGTTTGAAGACTAAAATACAAAATATTTAGATTTGAATATAAAAAAATTAGGAAATATGAAATTTCAATGATGGAGTTTTCCACTATATATGCATATGCCTCTTTTATCTCTCTCACATCACTATATGATATGCAATCTTTTTATAAAGTTTCCCAGATTCTTTTTTTATTATAATTCTCTTTTTCACATTAATCAACTACTTCTTTTGACATCTAACATATGTTACATATCCATAAGATTATCACCTTTCAAAATTATATTATATAAATATATCCATAATATCATATTATTTTATTGGTAACTTTTAATTTGGGTCTCTTTTGAATAATTAAAAACTCATCATTTTTTTTTAATATTGATCTATAGATGGTCAAAGATTGCTTCACATCTTCCGGGTAGAACTGACAACGAGATTAAGAACCATTGGAATACTCACATCAAGAAGAAGTTAAGGAAAATGGGCATTGACCCTCAAACTCATAAACATATATCCATCTCAACAGATTCACACCAATCCAACCTTCCCAGCTCTCATCTCGACACGGAGATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA

mRNA sequence

ATGGTAATTATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA

Coding sequence (CDS)

ATGGTAATTATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA

Protein sequence

MVIMSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDFEWICSNDTSNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI

Homology

[Close]

BLAST of CsGy3G020620 vs. NCBI nr
Match: XP_004145848.1 (PREDICTED: protein ODORANT1-like [Cucumis sativus] >KGN57790.1 hypothetical protein Csa_3G303630 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 2.3e-53
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 4   MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDD 63
           MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDD
Sbjct: 150 MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDD 209

Query: 64  LEFPDFEWICSNDTSNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
           LEFPDFEWICSNDT+NNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI
Sbjct: 210 LEFPDFEWICSNDTNNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 267

[Close]

BLAST of CsGy3G020620 vs. NCBI nr
Match: XP_008457024.1 (PREDICTED: protein ODORANT1 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 5.3e-34
Identity = 97/119 (81.51%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 4   MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSST-XXXXXXXXXXXXXNIIKFD 63
           MSPSSPV NI ETKDP EVITSTT IEPKTPPLNSCVSST XXXXXXXXXXXXX      
Sbjct: 149 MSPSSPV-NIAETKDPAEVITSTTAIEPKTPPLNSCVSSTWXXXXXXXXXXXXXXXXXXX 208

Query: 64  DLEFPDFEWICSNDTSNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
                  EW+CSNDTSNNNDNDIGFWEDDDFSSWDFLVG HEDG +VPIFQESWPCGLI
Sbjct: 209 XXXXXXXEWVCSNDTSNNNDNDIGFWEDDDFSSWDFLVG-HEDG-EVPIFQESWPCGLI 264

[Close]

BLAST of CsGy3G020620 vs. NCBI nr
Match: XP_022948332.1 (transcription factor MYB20-like [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 4.5e-17
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 27  TVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDDLEFPDFEWICSNDTSNNNDNDIG 86
           +VIEP+   L+ C+ S XXXXXXXXXXXXX  I F+DL+ PDF+W+  NDT NNN +D+G
Sbjct: 162 SVIEPQA-ILDPCIPSXXXXXXXXXXXXXXXPIGFEDLKLPDFDWLYCNDT-NNNGSDVG 221

Query: 87  FWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
           FWE DDFSSWDFLVG HEDG +VPIFQESWPCGL+
Sbjct: 222 FWE-DDFSSWDFLVG-HEDG-EVPIFQESWPCGLL 251

[Close]

BLAST of CsGy3G020620 vs. NCBI nr
Match: XP_022997842.1 (transcription factor MYB20-like [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 21  EVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDDLEFPDFEWICSNDTSNN 80
           +  T   VIEP+   L+ C+ S XXXXXXXXXXXXX  I F+DL+ PDF+W+  NDTSNN
Sbjct: 156 QATTCMNVIEPQA-ILDPCIPSXXXXXXXXXXXXXXXPIGFEDLKLPDFDWLYCNDTSNN 215

Query: 81  NDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
             +D+G WE DDFSSWDFLVG HEDG +VPIFQESWPCGL+
Sbjct: 216 G-SDVGVWE-DDFSSWDFLVG-HEDG-EVPIFQESWPCGLL 251

[Close]

BLAST of CsGy3G020620 vs. NCBI nr
Match: XP_023525317.1 (transcription factor MYB20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 21  EVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDDLEFPDFEWICSNDTSNN 80
           +  T   VIE +   L+ C+ S XXXXXXXXXXXXX  I F+DL+ PDF+W+  ND SNN
Sbjct: 156 QATTCMNVIESQA-ILDPCIPSXXXXXXXXXXXXXXXPIGFEDLKLPDFDWLYCNDMSNN 215

Query: 81  NDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
             +D+GFWE DDFSSWDFLVG HEDG +VPIFQESWPCGL+
Sbjct: 216 G-SDVGFWE-DDFSSWDFLVG-HEDG-EVPIFQESWPCGLL 251

[Close]

BLAST of CsGy3G020620 vs. TrEMBL
Match: tr|A0A0A0L723|A0A0A0L723_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G303630 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 4   MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDD 63
           MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDD
Sbjct: 150 MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTXXXXXXXXXXXXXNIIKFDD 209

Query: 64  LEFPDFEWICSNDTSNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
           LEFPDFEWICSNDT+NNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI
Sbjct: 210 LEFPDFEWICSNDTNNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 267

[Close]

BLAST of CsGy3G020620 vs. TrEMBL
Match: tr|A0A1S3C586|A0A1S3C586_CUCME (protein ODORANT1 OS=Cucumis melo OX=3656 GN=LOC103496805 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.5e-34
Identity = 97/119 (81.51%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 4   MSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSST-XXXXXXXXXXXXXNIIKFD 63
           MSPSSPV NI ETKDP EVITSTT IEPKTPPLNSCVSST XXXXXXXXXXXXX      
Sbjct: 149 MSPSSPV-NIAETKDPAEVITSTTAIEPKTPPLNSCVSSTWXXXXXXXXXXXXXXXXXXX 208

Query: 64  DLEFPDFEWICSNDTSNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 122
                  EW+CSNDTSNNNDNDIGFWEDDDFSSWDFLVG HEDG +VPIFQESWPCGLI
Sbjct: 209 XXXXXXXEWVCSNDTSNNNDNDIGFWEDDDFSSWDFLVG-HEDG-EVPIFQESWPCGLI 264

The following BLAST results are available for this feature:

BLAST of CsGy3G020620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145848.1	2.3e-53	99.15	PREDICTED: protein ODORANT1-like [Cucumis sativus] >KGN57790.1 hypothetical prot...	[more]
XP_008457024.1	5.3e-34	81.51	PREDICTED: protein ODORANT1 [Cucumis melo]	[more]
XP_022948332.1	4.5e-17	69.47	transcription factor MYB20-like [Cucurbita moschata]	[more]
XP_022997842.1	1.7e-16	65.35	transcription factor MYB20-like [Cucurbita maxima]	[more]
XP_023525317.1	1.1e-15	64.36	transcription factor MYB20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G020620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G020620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G020620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L723\|A0A0A0L723_CUCSA	1.5e-53	99.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G303630 PE=4 SV=1	[more]
tr\|A0A1S3C586\|A0A1S3C586_CUCME	3.5e-34	81.51	protein ODORANT1 OS=Cucumis melo OX=3656 GN=LOC103496805 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000652	regulation of secondary cell wall biogenesis
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G020620.1	CsGy3G020620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G020620	Cla013215	Watermelon (97103) v1	cgybwmB232
CsGy3G020620	Cp4.1LG02g17050	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G020620	MELO3C020225.2	Melon (DHL92) v3.6.1	cgybmedB216
CsGy3G020620	CsaV3_3G021000	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G020620	Cla97C05G093510	Watermelon (97103) v2	cgybwmbB209
CsGy3G020620	Bhi01G001490	Wax gourd	cgybwgoB289
CsGy3G020620	Carg26931	Silver-seed gourd	carcgybB0515

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G020620	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G020620	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G020620	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G020620	Silver-seed gourd	carcgybB0757
CsGy3G020620	Wax gourd	cgybwgoB259
CsGy3G020620	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G020620	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G020620	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G020620	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G020620	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G020620	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G020620	Bottle gourd (USVL1VR-Ls)	cgyblsiB199