Cp4.1LG02g17050 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g17050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 12461637 .. 12462486 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGTTCGTGGAAAACCATGGGAAGGCAGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGGCCATGGACAGCTGAGGAAGACAAGAAGCTCATCAACTTCATCCTCTCAAATGGGCAGTGTTGTTGGAGGGCTGTCCCGAAACTTGCCGGCCTTTTGCGATGCGGGAAAAGTTGCAGACTTCGATGGACTAATTACCTAAGGCCCGACCTTAAACGAGGCCTTCTCTCTGATTTCGAAGAGAAAATGGTCATTGACCTCCATGCTCAACTCGGAAACAGGTCAGTTGGGGTCGGTCTTTATCTCTCCTCTTCTCTGTAACTCAATCTTGAATCTTCCTTGCATTTTTATTTTCAGATGGTCTAAGATTGCTTCCCATCTTCCTGGAAGAACCGACAATGAGATAAAGAATCATTGGAACACTCACATTAAAAAGAAGCTAAGAAAAATGGGCATCGACCCTCAAACGCACAAACCTATCTCCTCCCCAACGGTTCAACTTCAACCCGATGTAGAGAGATCATCAAACTCATTGGTTGTCACTGACGTCGAAGAGGAACAAGCAACAACGTGCATGAATGTCATTGAGTCTCAAGCAATTCTAGATCCTTGTATTCCTTCCTCGTCGTCTTCGTCTTCTTCATCTTCGTCTCCTTCAACCTCGAATCCAATTGGGTTTGAAGACCTCAAGCTCCCCGATTTCGATTGGTTATATTGCAACGACATGAGTAATAATGGCAGTGATGTCGGATTTTGGGAAGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTCATGAGGACGGTGAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTACTATGA

mRNA sequence

AGGAGTTCGTGGAAAACCATGGGAAGGCAGCCATGCTGTGAGAAGGAACAAGCAACAACGTGCATGAATGTCATTGAGTCTCAAGCAATTCTAGATCCTTGTATTCCTTCCTCGTCGTCTTCGTCTTCTTCATCTTCGTCTCCTTCAACCTCGAATCCAATTGGGTTTGAAGACCTCAAGCTCCCCGATTTCGATTGGTTATATTGCAACGACATGAGTAATAATGGCAGTGATGTCGGATTTTGGGAAGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTCATGAGGACGGTGAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTACTATGA

Coding sequence (CDS)

AGGAGTTCGTGGAAAACCATGGGAAGGCAGCCATGCTGTGAGAAGGAACAAGCAACAACGTGCATGAATGTCATTGAGTCTCAAGCAATTCTAGATCCTTGTATTCCTTCCTCGTCGTCTTCGTCTTCTTCATCTTCGTCTCCTTCAACCTCGAATCCAATTGGGTTTGAAGACCTCAAGCTCCCCGATTTCGATTGGTTATATTGCAACGACATGAGTAATAATGGCAGTGATGTCGGATTTTGGGAAGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTCATGAGGACGGTGAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTACTATGA

Protein sequence

RSSWKTMGRQPCCEKEQATTCMNVIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWEDDFSSWDFLVGHEDGEVPIFQESWPCGLL
Homology
[Close]
BLAST of Cp4.1LG02g17050 vs. TrEMBL
Match: A0A0A0L723_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G303630 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 24  VIESQAILDP-------CIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNG 83
           VI S  +++P       C+ S+SSSS+S S  S SN I F+DL+ PDF+W+  ND +NN 
Sbjct: 168 VITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDFEWICSNDTNNNN 227

Query: 84  -SDVGFWE-DDFSSWDFLVG-HEDG-EVPIFQESWPCGLL 113
            +D+GFWE DDFSSWDFLVG HEDG +VPIFQESWPCGL+
Sbjct: 228 DNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 267

[Close]
BLAST of Cp4.1LG02g17050 vs. TrEMBL
Match: M5XD57_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009966mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 47/89 (52.81%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 24  VIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWE 83
           +IE   IL PC PSSSSS+SSSSS S S     EDL LPDF+WL C D SNN   +G W+
Sbjct: 197 LIEPHEILVPCAPSSSSSTSSSSSSSNSASNFLEDLHLPDFEWL-C-DYSNNNDSIGLWD 256

Query: 84  DDFSSWDFLVGHEDGEVPIFQESWPCGLL 113
           DDFSSW              QESW  G+L
Sbjct: 257 DDFSSWG-------------QESWAYGIL 270

[Close]
BLAST of Cp4.1LG02g17050 vs. TrEMBL
Match: G7J9D0_MEDTR (Myb transcription factor OS=Medicago truncatula GN=MTR_3g065440 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1 

Query: 37  SSSSSSSSSSSPSTSNPIGF-EDLKLPDFDWLYCN------DMSNNGSDVGFWEDDF-SS 96
           SSS+++S+SSS STSN   F EDL LPDFDW + N      D +NN  ++  W+DDF  S
Sbjct: 223 SSSTTTSTSSSTSTSNSSNFLEDLLLPDFDWSHDNNIENNSDNNNNNINMTLWDDDFIRS 282

Query: 97  WDFLVGHED-----GEVPIFQESWPCGL 112
           WDF++  +D       V +  ESW  GL
Sbjct: 283 WDFVINDDDDGDMNSRVVMDSESWAYGL 310

[Close]
BLAST of Cp4.1LG02g17050 vs. TrEMBL
Match: A0A097EVB3_9ROSI (Myb-related transcription factor OS=Vitis amurensis GN=Myb2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 24  VIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWE 83
           +I+   IL PC P+SS+SSSSSSS S S+ I  EDL+  DFDW +C D SN   D+GFW+
Sbjct: 204 LIQPHEILVPCDPTSSTSSSSSSSSSASSMI-LEDLQFLDFDW-HC-DYSN---DLGFWD 263

Query: 84  DDFSSWDFLVGHEDGE 100
           D F+SWD  +  +DG+
Sbjct: 264 DAFTSWDLFI-EDDGD 272

[Close]
BLAST of Cp4.1LG02g17050 vs. TrEMBL
Match: F6HSH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g00450 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 24  VIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWE 83
           +I+   IL PC P+SS+SSSSSSS S S+ I  EDL+  DFDW +C D +N   D+GFW+
Sbjct: 193 LIQPHEILVPCDPTSSTSSSSSSSSSASSMI-LEDLQFLDFDW-HC-DYNN---DLGFWD 252

Query: 84  DDFSSWDFLVGHEDGE 100
           D F+SWD  +  +DG+
Sbjct: 253 DAFTSWDLFI-DDDGD 261

[Close]
BLAST of Cp4.1LG02g17050 vs. NCBI nr
Match: gi|659114349|ref|XP_008457024.1| (PREDICTED: protein ODORANT1-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23
Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = 1 

Query: 31  LDPCIPSSSSSSSSSSSPST-SNPIGFEDLKLPDFDWLYCNDMSNNG-SDVGFWE-DDFS 90
           L+ C+ S+ SSS+S SS ST SN I F+DL+ PDF+W+  ND SNN  +D+GFWE DDFS
Sbjct: 180 LNSCVSSTWSSSTSPSSSSTNSNLIKFDDLEFPDFEWVCSNDTSNNNDNDIGFWEDDDFS 239

Query: 91  SWDFLVGHEDGEVPIFQESWPCGLL 113
           SWDFLVGHEDGEVPIFQESWPCGL+
Sbjct: 240 SWDFLVGHEDGEVPIFQESWPCGLI 264

[Close]
BLAST of Cp4.1LG02g17050 vs. NCBI nr
Match: gi|449456221|ref|XP_004145848.1| (PREDICTED: protein ODORANT1-like [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-21
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 24  VIESQAILDP-------CIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNG 83
           VI S  +++P       C+ S+SSSS+S S  S SN I F+DL+ PDF+W+  ND +NN 
Sbjct: 168 VITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDFEWICSNDTNNNN 227

Query: 84  -SDVGFWE-DDFSSWDFLVG-HEDG-EVPIFQESWPCGLL 113
            +D+GFWE DDFSSWDFLVG HEDG +VPIFQESWPCGL+
Sbjct: 228 DNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI 267

[Close]
BLAST of Cp4.1LG02g17050 vs. NCBI nr
Match: gi|645243333|ref|XP_008227926.1| (PREDICTED: protein ODORANT1-like [Prunus mume])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 47/89 (52.81%), Postives = 54/89 (60.67%), Query Frame = 1 

Query: 24  VIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWE 83
           +IE   IL PC PSSSSS+SSSSS S S     EDL LPDF+WL C D SNN  ++G W+
Sbjct: 197 LIEPPEILVPCAPSSSSSTSSSSSSSNSASNFLEDLHLPDFEWL-C-DYSNNNDNIGLWD 256

Query: 84  DDFSSWDFLVGHEDGEVPIFQESWPCGLL 113
           DDFSSW              QESW  G+L
Sbjct: 257 DDFSSWG-------------QESWAYGIL 270

[Close]
BLAST of Cp4.1LG02g17050 vs. NCBI nr
Match: gi|595940021|ref|XP_007215806.1| (hypothetical protein PRUPE_ppa009966mg [Prunus persica])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 47/89 (52.81%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 24  VIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWE 83
           +IE   IL PC PSSSSS+SSSSS S S     EDL LPDF+WL C D SNN   +G W+
Sbjct: 197 LIEPHEILVPCAPSSSSSTSSSSSSSNSASNFLEDLHLPDFEWL-C-DYSNNNDSIGLWD 256

Query: 84  DDFSSWDFLVGHEDGEVPIFQESWPCGLL 113
           DDFSSW              QESW  G+L
Sbjct: 257 DDFSSWG-------------QESWAYGIL 270

[Close]
BLAST of Cp4.1LG02g17050 vs. NCBI nr
Match: gi|694389919|ref|XP_009370562.1| (PREDICTED: protein ODORANT1-like [Pyrus x bretschneideri])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 24  VIESQAILDPCIPSSSSSSSSSSSPSTSNPIGFEDLKLPDFDWLYC-----NDMSNNGSD 83
           +IE   IL PC PSSS+SSSSSS+   S+ I  EDL LPDF+W  C     N+ + N   
Sbjct: 198 LIEPHEILVPCAPSSSTSSSSSSN---SSSIFLEDLYLPDFEWPDCDYSNNNNNNQNNDS 257

Query: 84  VGFWEDDFSSWDFLVGHEDGEVPIFQESWPCGLL 113
           +G W+DDFSSW              Q+SW  GLL
Sbjct: 258 MGLWDDDFSSWG-------------QDSWAYGLL 275

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g17050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g17050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L723_CUCSA3.8e-2159.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G303630 PE=4 SV=1[more]
M5XD57_PRUPE2.7e-1152.81Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009966mg PE=4 SV=1[more]
G7J9D0_MEDTR4.1e-0745.45Myb transcription factor OS=Medicago truncatula GN=MTR_3g065440 PE=4 SV=1[more]
A0A097EVB3_9ROSI5.3e-0752.63Myb-related transcription factor OS=Vitis amurensis GN=Myb2 PE=2 SV=1[more]
F6HSH3_VITVI1.5e-0651.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g00450 PE=4 SV=... [more]
BLAST of Cp4.1LG02g17050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g17050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114349|ref|XP_008457024.1|3.4e-2369.41PREDICTED: protein ODORANT1-like [Cucumis melo][more]
gi|449456221|ref|XP_004145848.1|5.4e-2159.00PREDICTED: protein ODORANT1-like [Cucumis sativus][more]
gi|645243333|ref|XP_008227926.1|3.9e-1152.81PREDICTED: protein ODORANT1-like [Prunus mume][more]
gi|595940021|ref|XP_007215806.1|3.9e-1152.81hypothetical protein PRUPE_ppa009966mg [Prunus persica][more]
gi|694389919|ref|XP_009370562.1|2.4e-0845.74PREDICTED: protein ODORANT1-like [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0042546 cell wall biogenesis
biological_process GO:0050794 regulation of cellular process
biological_process GO:0045491 xylan metabolic process
biological_process GO:2000652 regulation of secondary cell wall biogenesis
biological_process GO:0009737 response to abscisic acid
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g17050.1Cp4.1LG02g17050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g17050CmaCh01G003750Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g17050CmoCh01G003920Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g17050Cla013215Watermelon (97103) v1cpewmB568
Cp4.1LG02g17050MELO3C020225.2Melon (DHL92) v3.6.1cpemedB630
Cp4.1LG02g17050CsaV3_3G021000Cucumber (Chinese Long) v3cpecucB0686
Cp4.1LG02g17050CsGy3G020620Cucumber (Gy14) v2cgybcpeB380
Cp4.1LG02g17050Carg26931Silver-seed gourdcarcpeB0720
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g17050Cucurbita moschata (Rifu)cmocpeB241
Cp4.1LG02g17050Wild cucumber (PI 183967)cpecpiB552
Cp4.1LG02g17050Cucumber (Chinese Long) v2cpecuB547
Cp4.1LG02g17050Bottle gourd (USVL1VR-Ls)cpelsiB470
Cp4.1LG02g17050Watermelon (Charleston Gray)cpewcgB518
Cp4.1LG02g17050Melon (DHL92) v3.5.1cpemeB529
Cp4.1LG02g17050Silver-seed gourdcarcpeB1072
Cp4.1LG02g17050Wax gourdcpewgoB0673
Cp4.1LG02g17050Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG02g17050Cucurbita maxima (Rimu)cmacpeB279