Cla97C05G093510 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G093510
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein ODORANT1
Location	Cla97Chr05 : 12826140 .. 12826562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTGACCCTCAAACTCATAAACCAATTTCCATCTCAACTGATTCATCCCAACCCAACCTTCACTCTCATCATGACACGGAGACGTTGCCAAACTCACCCATCGACGCCATCGAAACCAAGGAGTCGGCACAAACAATAACCTCAACAATTTCTGTTGAGCCTGAAACATCTCTAAATCCTTGTGCTTCTTCTTCCTCTTCTTCTTTGTCTTTGTCGTCTTCAAACTCAAATCCAATTGGGTTTGAAGATCTCGAGTTTCCAGATTTCAAGTGGGTATATAGCAATGACACAAGTAATAATGACAATGGTATCGAATTTTGGGAAGATGATTATTTGAGTAATTGGGATTTCTTGGTTGGTCATGAAGATGGAGAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA

mRNA sequence

ATGGGTATTGACCCTCAAACTCATAAACCAATTTCCATCTCAACTGATTCATCCCAACCCAACCTTCACTCTCATCATGACACGGAGACGTTGCCAAACTCACCCATCGACGCCATCGAAACCAAGGAGTCGGCACAAACAATAACCTCAACAATTTCTGTTGAGCCTGAAACATCTCTAAATCCTTGTGCTTCTTCTTCCTCTTCTTCTTTGTCTTTGTCGTCTTCAAACTCAAATCCAATTGGGTTTGAAGATCTCGAGTTTCCAGATTTCAAGTGGGTATATAGCAATGACACAAGTAATAATGACAATGGTATCGAATTTTGGGAAGATGATTATTTGAGTAATTGGGATTTCTTGGTTGGTCATGAAGATGGAGAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA

Coding sequence (CDS)

ATGGGTATTGACCCTCAAACTCATAAACCAATTTCCATCTCAACTGATTCATCCCAACCCAACCTTCACTCTCATCATGACACGGAGACGTTGCCAAACTCACCCATCGACGCCATCGAAACCAAGGAGTCGGCACAAACAATAACCTCAACAATTTCTGTTGAGCCTGAAACATCTCTAAATCCTTGTGCTTCTTCTTCCTCTTCTTCTTTGTCTTTGTCGTCTTCAAACTCAAATCCAATTGGGTTTGAAGATCTCGAGTTTCCAGATTTCAAGTGGGTATATAGCAATGACACAAGTAATAATGACAATGGTATCGAATTTTGGGAAGATGATTATTTGAGTAATTGGGATTTCTTGGTTGGTCATGAAGATGGAGAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA

Protein sequence

MGIDPQTHKPISISTDSSQPNLHSHHDTETLPNSPIDAIETKESAQTITSTISVEPETSLNPCASSSSSSLSLSSSNSNPIGFEDLEFPDFKWVYSNDTSNNDNGIEFWEDDYLSNWDFLVGHEDGEVPIFQESWPCGLI

Homology

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BLAST of Cla97C05G093510 vs. NCBI nr
Match: XP_004145848.1 (PREDICTED: protein ODORANT1-like [Cucumis sativus] >KGN57790.1 hypothetical protein Csa_3G303630 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 9.1e-30
Identity = 94/148 (63.51%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHH-DTETLPNSPIDAI-ETKESAQTITSTXXXXXXX 60
           MGIDPQTHK ISISTDS Q NL S H DTE  P+SP++ I ETK+  + ITST       
Sbjct: 120 MGIDPQTHKHISISTDSHQSNLPSSHLDTEMSPSSPVNNIPETKDPGEVITSTTVIEPKT 179

Query: 61  XXXXXXXXXXXXXXXXXXXXXP---IGFEDLEFPDFKWVYSNDT-SNNDNGIEFWEDDYL 120
                     XXXXXXXXXXX    I F+DLEFPDF+W+ SNDT +NNDN I FWEDD  
Sbjct: 180 PPLNSCVSSTXXXXXXXXXXXXXNIIKFDDLEFPDFEWICSNDTNNNNDNDIGFWEDDDF 239

Query: 121 SNWDFLVG-HEDG-EVPIFQESWPCGLI 141
           S+WDFLVG HEDG +VPIFQESWPCGLI
Sbjct: 240 SSWDFLVGDHEDGDQVPIFQESWPCGLI 267

[Close]

BLAST of Cla97C05G093510 vs. NCBI nr
Match: XP_008457024.1 (PREDICTED: protein ODORANT1 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 4.5e-29
Identity = 91/145 (62.76%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHHDTETLPNSPIDAIETKESAQTITST----XXXXX 60
           MGIDPQTHKPISISTDS Q NL SH D E  P+SP++  ETK+ A+ ITST         
Sbjct: 120 MGIDPQTHKPISISTDSHQSNLPSHLDMEMSPSSPVNIAETKDPAEVITSTTAIEPKTPP 179

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXPIGFEDLEFPDFKWVYSNDTS-NNDNGIEFWEDDYLS 120
                    XXXXXXXXXXXXXX            +WV SNDTS NNDN I FWEDD  S
Sbjct: 180 LNSCVSSTWXXXXXXXXXXXXXXXXXXXXXXXXXXEWVCSNDTSNNNDNDIGFWEDDDFS 239

Query: 121 NWDFLVGHEDGEVPIFQESWPCGLI 141
           +WDFLVGHEDGEVPIFQESWPCGLI
Sbjct: 240 SWDFLVGHEDGEVPIFQESWPCGLI 264

[Close]

BLAST of Cla97C05G093510 vs. NCBI nr
Match: XP_022948332.1 (transcription factor MYB20-like [Cucurbita moschata])

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 83/140 (59.29%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHHDTETLPNSPIDAIETKESAQTITSTXXXXXXXXX 60
           MGIDPQTHKPIS  TD  QPN+      E   NS +     +E      S          
Sbjct: 119 MGIDPQTHKPISSPTDQLQPNV------ERSSNSLVVTDVEEEQTTARMSVIEPQAILDP 178

Query: 61  XXXXXXXXXXXXXXXXXXXPIGFEDLEFPDFKWVYSNDTSNNDNGIEFWEDDYLSNWDFL 120
               XXXXXXXXXXXXXXXPIGFEDL+ PDF W+Y NDT+NN + + FWEDD+ S+WDFL
Sbjct: 179 CIPSXXXXXXXXXXXXXXXPIGFEDLKLPDFDWLYCNDTNNNGSDVGFWEDDF-SSWDFL 238

Query: 121 VGHEDGEVPIFQESWPCGLI 141
           VGHEDGEVPIFQESWPCGL+
Sbjct: 239 VGHEDGEVPIFQESWPCGLL 251

[Close]

BLAST of Cla97C05G093510 vs. NCBI nr
Match: XP_023525317.1 (transcription factor MYB20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 8.0e-26
Identity = 83/140 (59.29%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHHDTETLPNSPIDAIETKESAQTITSTXXXXXXXXX 60
           MGIDPQTHKPIS  T   QP      D E   NS +     +E A T  +          
Sbjct: 119 MGIDPQTHKPISSPTVQLQP------DVERSSNSLVVTDVEEEQATTCMNVIESQAILDP 178

Query: 61  XXXXXXXXXXXXXXXXXXXPIGFEDLEFPDFKWVYSNDTSNNDNGIEFWEDDYLSNWDFL 120
               XXXXXXXXXXXXXXXPIGFEDL+ PDF W+Y ND SNN + + FWEDD+ S+WDFL
Sbjct: 179 CIPSXXXXXXXXXXXXXXXPIGFEDLKLPDFDWLYCNDMSNNGSDVGFWEDDF-SSWDFL 238

Query: 121 VGHEDGEVPIFQESWPCGLI 141
           VGHEDGEVPIFQESWPCGL+
Sbjct: 239 VGHEDGEVPIFQESWPCGLL 251

[Close]

BLAST of Cla97C05G093510 vs. NCBI nr
Match: XP_022997842.1 (transcription factor MYB20-like [Cucurbita maxima])

HSP 1 Score: 124.0 bits (310), Expect = 4.0e-25
Identity = 82/140 (58.57%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHHDTETLPNSPIDAIETKESAQTITSTXXXXXXXXX 60
           MGIDPQTHKPI      S P +    D E   NS I     +E A T  +          
Sbjct: 119 MGIDPQTHKPI------SSPTVQLQADVERSSNSLIVTDLEEEQATTCMNVIEPQAILDP 178

Query: 61  XXXXXXXXXXXXXXXXXXXPIGFEDLEFPDFKWVYSNDTSNNDNGIEFWEDDYLSNWDFL 120
               XXXXXXXXXXXXXXXPIGFEDL+ PDF W+Y NDTSNN + +  WEDD+ S+WDFL
Sbjct: 179 CIPSXXXXXXXXXXXXXXXPIGFEDLKLPDFDWLYCNDTSNNGSDVGVWEDDF-SSWDFL 238

Query: 121 VGHEDGEVPIFQESWPCGLI 141
           VGHEDGEVPIFQESWPCGL+
Sbjct: 239 VGHEDGEVPIFQESWPCGLL 251

[Close]

BLAST of Cla97C05G093510 vs. TrEMBL
Match: tr|A0A0A0L723|A0A0A0L723_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G303630 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-30
Identity = 94/148 (63.51%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHH-DTETLPNSPIDAI-ETKESAQTITSTXXXXXXX 60
           MGIDPQTHK ISISTDS Q NL S H DTE  P+SP++ I ETK+  + ITST       
Sbjct: 120 MGIDPQTHKHISISTDSHQSNLPSSHLDTEMSPSSPVNNIPETKDPGEVITSTTVIEPKT 179

Query: 61  XXXXXXXXXXXXXXXXXXXXXP---IGFEDLEFPDFKWVYSNDT-SNNDNGIEFWEDDYL 120
                     XXXXXXXXXXX    I F+DLEFPDF+W+ SNDT +NNDN I FWEDD  
Sbjct: 180 PPLNSCVSSTXXXXXXXXXXXXXNIIKFDDLEFPDFEWICSNDTNNNNDNDIGFWEDDDF 239

Query: 121 SNWDFLVG-HEDG-EVPIFQESWPCGLI 141
           S+WDFLVG HEDG +VPIFQESWPCGLI
Sbjct: 240 SSWDFLVGDHEDGDQVPIFQESWPCGLI 267

[Close]

BLAST of Cla97C05G093510 vs. TrEMBL
Match: tr|A0A1S3C586|A0A1S3C586_CUCME (protein ODORANT1 OS=Cucumis melo OX=3656 GN=LOC103496805 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.0e-29
Identity = 91/145 (62.76%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MGIDPQTHKPISISTDSSQPNLHSHHDTETLPNSPIDAIETKESAQTITST----XXXXX 60
           MGIDPQTHKPISISTDS Q NL SH D E  P+SP++  ETK+ A+ ITST         
Sbjct: 120 MGIDPQTHKPISISTDSHQSNLPSHLDMEMSPSSPVNIAETKDPAEVITSTTAIEPKTPP 179

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXPIGFEDLEFPDFKWVYSNDTS-NNDNGIEFWEDDYLS 120
                    XXXXXXXXXXXXXX            +WV SNDTS NNDN I FWEDD  S
Sbjct: 180 LNSCVSSTWXXXXXXXXXXXXXXXXXXXXXXXXXXEWVCSNDTSNNNDNDIGFWEDDDFS 239

Query: 121 NWDFLVGHEDGEVPIFQESWPCGLI 141
           +WDFLVGHEDGEVPIFQESWPCGLI
Sbjct: 240 SWDFLVGHEDGEVPIFQESWPCGLI 264

The following BLAST results are available for this feature:

BLAST of Cla97C05G093510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145848.1	9.1e-30	63.51	PREDICTED: protein ODORANT1-like [Cucumis sativus] >KGN57790.1 hypothetical prot...	[more]
XP_008457024.1	4.5e-29	62.76	PREDICTED: protein ODORANT1 [Cucumis melo]	[more]
XP_022948332.1	1.6e-26	59.29	transcription factor MYB20-like [Cucurbita moschata]	[more]
XP_023525317.1	8.0e-26	59.29	transcription factor MYB20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997842.1	4.0e-25	58.57	transcription factor MYB20-like [Cucurbita maxima]	[more]

BLAST of Cla97C05G093510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L723\|A0A0A0L723_CUCSA	6.0e-30	63.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G303630 PE=4 SV=1	[more]
tr\|A0A1S3C586\|A0A1S3C586_CUCME	3.0e-29	62.76	protein ODORANT1 OS=Cucumis melo OX=3656 GN=LOC103496805 PE=4 SV=1	[more]

BLAST of Cla97C05G093510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G093510 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0071554	cell wall organization or biogenesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:2000652	regulation of secondary cell wall biogenesis
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0030154	cell differentiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G093510.1	Cla97C05G093510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G093510	Cla013215	Watermelon (97103) v1	wmwmbB206
Cla97C05G093510	ClCG05G011420	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G093510	CsGy3G020620	Cucumber (Gy14) v2	cgybwmbB209
Cla97C05G093510	Bhi01G001490	Wax gourd	wgowmbB188

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G093510	Silver-seed gourd	carwmbB0795
Cla97C05G093510	Cucumber (Gy14) v1	cgywmbB644
Cla97C05G093510	Cucurbita maxima (Rimu)	cmawmbB264
Cla97C05G093510	Cucurbita maxima (Rimu)	cmawmbB473
Cla97C05G093510	Cucurbita moschata (Rifu)	cmowmbB244
Cla97C05G093510	Cucurbita moschata (Rifu)	cmowmbB454
Cla97C05G093510	Wild cucumber (PI 183967)	cpiwmbB224
Cla97C05G093510	Cucumber (Chinese Long) v3	cucwmbB220
Cla97C05G093510	Cucumber (Chinese Long) v2	cuwmbB218
Cla97C05G093510	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G093510	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G093510	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G093510	Wax gourd	wgowmbB194