CsGy3G009040 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G009040
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LIM domain-containing protein PLIM2b-like
Location	Chr3 : 7363618 .. 7366161 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAAAAAAGAAAAGAAAAAACCCCGGGAAACGCTGTCTTCCATTCCAACGAACACAACGGCGAACCACTCAGATAATGGAAGGCAAATGGCTTTCATCTCTCTCTCTCTCTCTCCACCCTCCATTTTTGTTCTCACAAAAAGCTCGACGAGTTCCTTTGAAATGGTCAACCAATCCCCCCCCCCTTATTTTCCTCTGAAACAACCCATCTTCTCCGAAATTGGAGCAGATCCATCTTCTGGTTCACAGTTCTGAAATCCAACATTTCCTGATGTATAAATTTGCTTTTGTAGTTAATCCTTCGAAGCCTTCCATCTTGTCCAGTCGCATTGTTTATTAACTGATAGACGAGGCTTCGGACGGCTTGGGGTTTCAATTGCCCTGTTTTTCTTCGTTTCTGGGGGTGGTTTCTTTCTTTGCTCTTACTTTTTTTTGCTCTTTCTCCAAGTTCTTGCATCTCGGATCAAGAATTCTTGTAAAAGAGTAAATTCTTCATAATGGCTTTCACCGGAACGTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTCGTTGATTTGTTAACCCTTGAAGGGAATCCTTACCATAAGAATTGCTTTAAATGTAGCCACTGCAAAGGCACCCTTTCGGTTAGAAGTGTTCAATCTCTTTTAATTTATTTCAATTTGAAATCCAATTACTTGAATTTGGCGGATTTTATCCCAATTGTTTGTTTATGGCAGATGAGCAGCTACTCGTGGATGGATGGTGTTCTGTATTGCAAGACTCATTTCGAGCAGCTCTTTAAGGAATCTGGGAATTTCAGCAAGAACTTTCAAAGTAGTAGTACAACATTTCTTTTTTTGTTTCTTCCTTTTTACTTTTCCTTATTTTCTGACATTCTCTCCTTTCCATGGTTTTGTATGACAACAGCTAAATCTTCTGATAAGCCAAATGATCTGGTATGATCTCACTCTTTTCACTTTTCTTAGGCTAGGTCGGCTTCATTGTGACTAGCAATTTTATGTTGGATGTATCTGCAAAAGCTTGGTTGTTAATGTTAGGCCGATGCAAATTTCCGAATTCATATCTAAAGGTTATTAGGATAAAGTCAAATTTTGGATGCTTCATCCAATAATTTCTCCCCCAATTCATGGTTTTGAATATACTATTCCTAATATTTTTATAGAAACAATCTGGCCTGGGAATTCTTGCACCTTTATGATAGTGGTTTTGTTCCTTATTTTAAAGCTTGCTCTTGAGTCCAATGGGGTTATAATATGTCATGAGAATAGGAAGGGTTTAAAGTTCCTATGATGTCATTTTATCCTCATTTCATATTTGGTAGTTTATGTCTTAGGGTTCATGAATCAAATTTAACTTTAGGAATTTCAACATTGTGCTCTCCATGCAAATGCTGTAATTTTTGCATATTATTACAATTTTCATAACTTTTGATAGACAAGGACCCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGATAAATGTTCTGTTTGCACCAAAACAGTTTATCCATTAGAGAAGGTATGTAGTTCTTCACCCCCTCCCCCTGCCTCCTATTTTGTATAATACATTTTTACAGTATTGTTAGTCTTTAAAATGTGAAAGAAACATTATTCTGCAGGGTTTTCTTTATTTGTTTGGAATGACTTTTTAAGTATTTATAAAAGTGTTTCTAAGTGGAAAAAAAAATGTTTTCAACATTTTAAATGATGAGGAGAATTGTAAGATATTTAGTTCTTAATTTCGATATTAATATTAGCTGATTTTAGGGTTGTGATAGAGAATGCTCCCTCATTTCTAAGGGATGGATTATTTTTCATGTTTGGCCATAGATTTGGCCTAATACTTAAATCTGCTACATCAAAATGTCATTTCAAATAGCTGATATATGGTTAGGAGAATTGAAACTGTATTATTTTTGTTTTTGGGAATAGGTCTCTTTGGAGGGGGAATGCTACCACAAGAAGTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTGTTCTTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCACCATTTTGCTCAGCTTTTCATGGTCAAAGGCAACTATAACCATGTCCTTGAAGCTGCAGCAAACAAGAAAACTACCACACCCCCAGCCGATCACACCGATGAAGATGCCGAGCCTTCACCTCGATCCGGGGAACAAGCGGTAGAGCAATCTTAAAATACCTTCTCTGCTCTACCAGCATTTGAGAATTCTTCTTCGCTTTATTCAACTTATAAAGAAAACAAAAATTATTCTGTTTCAAAAGAGAACCCATTTGTTTTTGTTCACATATTCACATTGGTTTGTTGTACTTGAAGACTCAAATTATGTGAGCTAGATAAACAGACCTTTCAAAGAATTGCACCATAGTTCTGTGTTGAATGAGAAGCTGGAATAAAAAGCAGATTTGGTGCAATTCCATATGGTCACCAAATATATTTTAGAAAAATATGATTTGATTGCATGAAACCTTAATCTCTCATAGTTTCTCACCCATACAATCTGAC

mRNA sequence

AAGAAAAAAAAGAAAAGAAAAAACCCCGGGAAACGCTGTCTTCCATTCCAACGAACACAACGGCGAACCACTCAGATAATGGAAGGCAAATGGCTTTCATCTCTCTCTCTCTCTCTCCACCCTCCATTTTTGTTCTCACAAAAAGCTCGACGAGTTCCTTTGAAATGGTCAACCAATCCCCCCCCCCTTATTTTCCTCTGAAACAACCCATCTTCTCCGAAATTGGAGCAGATCCATCTTCTGGTTCACAGTTCTGAAATCCAACATTTCCTGATGTATAAATTTGCTTTTGTAGTTAATCCTTCGAAGCCTTCCATCTTGTCCAGTCGCATTGTTTATTAACTGATAGACGAGGCTTCGGACGGCTTGGGGTTTCAATTGCCCTGTTTTTCTTCGTTTCTGGGGGTGGTTTCTTTCTTTGCTCTTACTTTTTTTTGCTCTTTCTCCAAGTTCTTGCATCTCGGATCAAGAATTCTTGTAAAAGAGTAAATTCTTCATAATGGCTTTCACCGGAACGTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTCGTTGATTTGTTAACCCTTGAAGGGAATCCTTACCATAAGAATTGCTTTAAATGTAGCCACTGCAAAGGCACCCTTTCGATGAGCAGCTACTCGTGGATGGATGGTGTTCTGTATTGCAAGACTCATTTCGAGCAGCTCTTTAAGGAATCTGGGAATTTCAGCAAGAACTTTCAAAGTAGTAGTACAACATTTCTTTTTTTGTTTCTTCCTTTTTACTTTTCCTTATTTTCTGACATTCTCTCCTTTCCATGGTTTTGTATGACAACAGCTAAATCTTCTGATAAGCCAAATGATCTGGTATGATCTCACTCTTTTCACTTTTCTTAGGCTAGGTCGGCTTCATTGTGACTAGCAATTTTATGTTGGATGTATCTGCAAAAGCTTGGTTGTTAATGTTAGGCCGATGCAAATTTCCGAATTCATATCTAAAGGTTATTAGGATAAAGTCAAATTTTGGATGCTTCATCCAATAATTTCTCCCCCAATTCATGGTTTTGAATATACTATTCCTAATATTTTTATAGAAACAATCTGGCCTGGGAATTCTTGCACCTTTATGATAGTGGTTTTGTTCCTTATTTTAAAGCTTGCTCTTGAGTCCAATGGGGTTATAATATGTCATGAGAATAGGAAGGGTTTAAAGTTCCTATGATGTCATTTTATCCTCATTTCATATTTGGTAGTTTATGTCTTAGGGTTCATGAATCAAATTTAACTTTAGGAATTTCAACATTGTGCTCTCCATGCAAATGCTGTAATTTTTGCATATTATTACAATTTTCATAACTTTTGATAGACAAGGACCCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGATAAATGTTCTGTTTGCACCAAAACAGTTTATCCATTAGAGAAGGTATGTAGTTCTTCACCCCCTCCCCCTGCCTCCTATTTTGTATAATACATTTTTACAGTATTGTTAGTCTTTAAAATGTGAAAGAAACATTATTCTGCAGGGTTTTCTTTATTTGTTTGGAATGACTTTTTAAGTATTTATAAAAGTGTTTCTAAGTGGAAAAAAAAATGTTTTCAACATTTTAAATGATGAGGAGAATTGTAAGATATTTAGTTCTTAATTTCGATATTAATATTAGCTGATTTTAGGGTTGTGATAGAGAATGCTCCCTCATTTCTAAGGGATGGATTATTTTTCATGTTTGGCCATAGATTTGGCCTAATACTTAAATCTGCTACATCAAAATGTCATTTCAAATAGCTGATATATGGTTAGGAGAATTGAAACTGTATTATTTTTGTTTTTGGGAATAGGTCTCTTTGGAGGGGGAATGCTACCACAAGAAGTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTGTTCTTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCACCATTTTGCTCAGCTTTTCATGGTCAAAGGCAACTATAACCATGTCCTTGAAGCTGCAGCAAACAAGAAAACTACCACACCCCCAGCCGATCACACCGATGAAGATGCCGAGCCTTCACCTCGATCCGGGGAACAAGCGGTAGAGCAATCTTAAAATACCTTCTCTGCTCTACCAGCATTTGAGAATTCTTCTTCGCTTTATTCAACTTATAAAGAAAACAAAAATTATTCTGTTTCAAAAGAGAACCCATTTGTTTTTGTTCACATATTCACATTGGTTTGTTGTACTTGAAGACTCAAATTATGTGAGCTAGATAAACAGACCTTTCAAAGAATTGCACCATAGTTCTGTGTTGAATGAGAAGCTGGAATAAAAAGCAGATTTGGTGCAATTCCATATGGTCACCAAATATATTTTAGAAAAATATGATTTGATTGCATGAAACCTTAATCTCTCATAGTTTCTCACCCATACAATCTGAC

Coding sequence (CDS)

ATGGCTTTCACCGGAACGTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTCGTTGATTTGTTAACCCTTGAAGGGAATCCTTACCATAAGAATTGCTTTAAATGTAGCCACTGCAAAGGCACCCTTTCGATGAGCAGCTACTCGTGGATGGATGGTGTTCTGTATTGCAAGACTCATTTCGAGCAGCTCTTTAAGGAATCTGGGAATTTCAGCAAGAACTTTCAAAGTAGTAGTACAACATTTCTTTTTTTGTTTCTTCCTTTTTACTTTTCCTTATTTTCTGACATTCTCTCCTTTCCATGGTTTTGTATGACAACAGCTAAATCTTCTGATAAGCCAAATGATCTGGTATGA

Protein sequence

MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQSSSTTFLFLFLPFYFSLFSDILSFPWFCMTTAKSSDKPNDLV

Homology

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BLAST of CsGy3G009040 vs. NCBI nr
Match: XP_004133874.1 (PREDICTED: LIM domain-containing protein PLIM2b-like [Cucumis sativus] >KGN56534.1 hypothetical protein Csa_3G122580 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSSST 82
          HFEQLFKESGNFSKNFQ+ S+
Sbjct: 61 HFEQLFKESGNFSKNFQTKSS 81

[Close]

BLAST of CsGy3G009040 vs. NCBI nr
Match: XP_008438068.1 (PREDICTED: LIM domain-containing protein PLIM2b-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQS 79
          HFEQLFKESGNFSKNFQ+
Sbjct: 61 HFEQLFKESGNFSKNFQT 78

[Close]

BLAST of CsGy3G009040 vs. NCBI nr
Match: XP_023540245.1 (LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MAFTGTLDKCKAC+KTVYVVDLL+LEGNPYHKNCF+CSHCKGTLSM+S+SWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQSSSTTF-LFLFLPFYFSLFSDILSFPWFCMTTAKSSDKP 116
           HF+QLFKESGNF+ NFQ S T   LFL +PF+FS   DIL       +TAKS  KP
Sbjct: 61  HFDQLFKESGNFA-NFQCSITVISLFLSVPFFFSYVPDILVH----CSTAKSEKKP 111

[Close]

BLAST of CsGy3G009040 vs. NCBI nr
Match: XP_022942231.1 (LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MAFTGTLDKCKAC+KTVYVVDLL+LEGNPYHKNCF+CSHCKGTLSM+S+SWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQSSSTTF-LFLFLPFYFSLFSDILSFPWFCMTTAKSSDKP 116
           HF+QLFKESGNF+ NFQ S T   LFL +PF F +F   L+F + C +TAKS  KP
Sbjct: 61  HFDQLFKESGNFA-NFQCSITVISLFLSVPFSFHMF---LTFSFHC-STAKSEKKP 111

[Close]

BLAST of CsGy3G009040 vs. NCBI nr
Match: XP_022934048.1 (LIM domain-containing protein PLIM2c-like [Cucurbita moschata] >XP_023540704.1 LIM domain-containing protein PLIM2c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 74/79 (93.67%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSS 80
          HFEQLFKESGNFSKNFQ+S
Sbjct: 61 HFEQLFKESGNFSKNFQTS 79

[Close]

BLAST of CsGy3G009040 vs. TAIR10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-37
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKCKACDKTVYV+DLLTLEGN YHK+CF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1  MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61 HFEQLFKESGNFSKNFQSSST 82
          HFEQLFKESGN+SKNFQ+  T
Sbjct: 61 HFEQLFKESGNYSKNFQAGKT 81

[Close]

BLAST of CsGy3G009040 vs. TAIR10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 151.0 bits (380), Expect = 4.7e-37
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKC  CDKTVYVVD+L++EG PYHK+CF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1  MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSSST 82
          HFEQLFKESGNFSKNFQ   T
Sbjct: 61 HFEQLFKESGNFSKNFQPGKT 81

[Close]

BLAST of CsGy3G009040 vs. TAIR10
Match: AT3G55770.7 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-30
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGT  KCKAC+KTVY V+LL+ +G  YHK+CFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1  MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61 HFEQLFKESGNFSKNFQS 79
          HFEQLFKESG+F+KNFQS
Sbjct: 61 HFEQLFKESGSFNKNFQS 78

[Close]

BLAST of CsGy3G009040 vs. TAIR10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-29
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGT  KC+AC+KTVY V+LL+ +G  YHK CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1  MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61 HFEQLFKESGNFSKNFQS 79
          HFEQLFKESG+FSKNFQS
Sbjct: 61 HFEQLFKESGSFSKNFQS 78

[Close]

BLAST of CsGy3G009040 vs. TAIR10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-25
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          MAF GT  KC ACDKTVY+VD LT +   YHK CF+C HCKGTL +S+Y+  +GVLYC+ 
Sbjct: 1  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61 HFEQLFKESGNFSKNFQSS 80
          HF+Q FK +G+  K+F+ +
Sbjct: 61 HFDQNFKRTGSLEKSFEGT 79

[Close]

BLAST of CsGy3G009040 vs. Swiss-Prot
Match: sp|O80839|PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.5e-36
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKCKACDKTVYV+DLLTLEGN YHK+CF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1  MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61 HFEQLFKESGNFSKNFQSSST 82
          HFEQLFKESGN+SKNFQ+  T
Sbjct: 61 HFEQLFKESGNYSKNFQAGKT 81

[Close]

BLAST of CsGy3G009040 vs. Swiss-Prot
Match: sp|Q1ECF5|PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-36
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKC  CDKTVYVVD+L++EG PYHK+CF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1  MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSSST 82
          HFEQLFKESGNFSKNFQ   T
Sbjct: 61 HFEQLFKESGNFSKNFQPGKT 81

[Close]

BLAST of CsGy3G009040 vs. Swiss-Prot
Match: sp|Q9M047|WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-29
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGT  KCKAC+KTVY V+LL+ +G  YHK+CFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1  MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61 HFEQLFKESGNFSKNFQS 79
          HFEQLFKESG+F+KNFQS
Sbjct: 61 HFEQLFKESGSFNKNFQS 78

[Close]

BLAST of CsGy3G009040 vs. Swiss-Prot
Match: sp|O04193|WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGT  KC+AC+KTVY V+LL+ +G  YHK CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1  MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61 HFEQLFKESGNFSKNFQS 79
          HFEQLFKESG+FSKNFQS
Sbjct: 61 HFEQLFKESGSFSKNFQS 78

[Close]

BLAST of CsGy3G009040 vs. Swiss-Prot
Match: sp|Q94JX5|WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          MAF GT  KC ACDKTVY+VD LT +   YHK CF+C HCKGTL +S+Y+  +GVLYC+ 
Sbjct: 1  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61 HFEQLFKESGNFSKNFQSS 80
          HF+Q FK +G+  K+F+ +
Sbjct: 61 HFDQNFKRTGSLEKSFEGT 79

[Close]

BLAST of CsGy3G009040 vs. TrEMBL
Match: tr|A0A0A0L6A8|A0A0A0L6A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122580 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSSST 82
          HFEQLFKESGNFSKNFQ+ S+
Sbjct: 61 HFEQLFKESGNFSKNFQTKSS 81

[Close]

BLAST of CsGy3G009040 vs. TrEMBL
Match: tr|A0A1S3AVG8|A0A1S3AVG8_CUCME (LIM domain-containing protein PLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103483289 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.2e-40
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQS 79
          HFEQLFKESGNFSKNFQ+
Sbjct: 61 HFEQLFKESGNFSKNFQT 78

[Close]

BLAST of CsGy3G009040 vs. TrEMBL
Match: tr|A0A1S3AW36|A0A1S3AW36_CUCME (LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC103483293 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-38
Identity = 73/79 (92.41%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSS 80
          HFEQLFKESGNFSKNFQ++
Sbjct: 61 HFEQLFKESGNFSKNFQNA 79

[Close]

BLAST of CsGy3G009040 vs. TrEMBL
Match: tr|A0A0A0L4A1|A0A0A0L4A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
          M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+C KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61 HFEQLFKESGNFSKNFQSS 80
          HFEQLFKESGNFSKNFQ++
Sbjct: 61 HFEQLFKESGNFSKNFQNA 79

[Close]

BLAST of CsGy3G009040 vs. TrEMBL
Match: tr|W9RX88|W9RX88_9ROSA (Pollen-specific protein SF3 OS=Morus notabilis OX=981085 GN=L484_006564 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.3e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MAFTGTLDKCKAC+KTVYVVD+++LEG PYHK+CFKCSHCKGTLSMSSYSWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDMMSLEGVPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQSSSTTFLFLFLPFYFSLFSDILSFPWFCMTTAKSSDKPND 118
           HFEQLFKESGNFSKNFQ+           F   LF++          TAKSS++ ND
Sbjct: 61  HFEQLFKESGNFSKNFQT----------VFLLGLFANNNKRVGEKFVTAKSSERQND 107

The following BLAST results are available for this feature:

BLAST of CsGy3G009040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133874.1	1.7e-40	96.30	PREDICTED: LIM domain-containing protein PLIM2b-like [Cucumis sativus] >KGN56534...	[more]
XP_008438068.1	6.3e-40	98.72	PREDICTED: LIM domain-containing protein PLIM2b-like [Cucumis melo]	[more]
XP_023540245.1	2.4e-39	74.14	LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita pepo subsp. pepo...	[more]
XP_022942231.1	4.1e-39	74.14	LIM domain-containing protein PLIM2b-like isoform X1 [Cucurbita moschata]	[more]
XP_022934048.1	1.6e-38	93.67	LIM domain-containing protein PLIM2c-like [Cucurbita moschata] >XP_023540704.1 L...	[more]

BLAST of CsGy3G009040 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45800.1	3.6e-37	81.48	GATA type zinc finger transcription factor family protein	[more]
AT1G01780.1	4.7e-37	80.25	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.7	1.5e-30	71.79	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.1e-29	69.23	GATA type zinc finger transcription factor family protein	[more]
AT1G10200.1	7.0e-25	56.96	GATA type zinc finger transcription factor family protein	[more]

BLAST of CsGy3G009040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80839\|PLI2A_ARATH	6.5e-36	81.48	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
sp\|Q1ECF5\|PLI2B_ARATH	8.4e-36	80.25	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
sp\|Q9M047\|WLI2B_ARATH	2.6e-29	71.79	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
sp\|O04193\|WLI2A_ARATH	3.8e-28	69.23	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
sp\|Q94JX5\|WLIM1_ARATH	1.3e-23	56.96	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]

BLAST of CsGy3G009040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6A8\|A0A0A0L6A8_CUCSA	1.1e-40	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122580 PE=4 SV=1	[more]
tr\|A0A1S3AVG8\|A0A1S3AVG8_CUCME	4.2e-40	98.72	LIM domain-containing protein PLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10348328...	[more]
tr\|A0A1S3AW36\|A0A1S3AW36_CUCME	2.3e-38	92.41	LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC10348329...	[more]
tr\|A0A0A0L4A1\|A0A0A0L4A1_CUCSA	1.1e-37	91.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1	[more]
tr\|W9RX88\|W9RX88_9ROSA	4.3e-37	68.38	Pollen-specific protein SF3 OS=Morus notabilis OX=981085 GN=L484_006564 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001781	Znf_LIM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G009040.1	CsGy3G009040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 1.7E-12 score: 57.5
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..65 e-value: 2.6E-13 score: 49.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.484
None	No IPR available	GENE3D	G3DSA:2.10.110.10		coord: 6..74 e-value: 2.1E-19 score: 71.5
None	No IPR available	PANTHER	PTHR24206:SF22	LIM DOMAIN-CONTAINING PROTEIN PLIM2A-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR24206	FAMILY NOT NAMED	coord: 1..81
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.41566E-36 score: 119.492
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 2..35
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G009040	Cla021249	Watermelon (97103) v1	cgybwmB217
CsGy3G009040	Csa3G122580	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G009040	MELO3C006128	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G009040	ClCG05G001690	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G009040	CSPI03G08950	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G009040	CmaCh06G010930	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G009040	CmoCh06G011190	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G009040	MELO3C006128.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G009040	CsaV3_3G009070	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G009040	Cla97C05G082100	Watermelon (97103) v2	cgybwmbB196
CsGy3G009040	Bhi01G000271	Wax gourd	cgybwgoB262
CsGy3G009040	Carg24944	Silver-seed gourd	carcgybB0644

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G009040	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G009040	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G009040	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G009040	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G009040	Bottle gourd (USVL1VR-Ls)	cgyblsiB196