CsGy3G003000 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G003000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	non-specific lipid-transfer protein 1
Location	Chr3 : 2481138 .. 2483751 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACGCTCTAATAAATCGCGTGAGAATTCTGTTTGATTTCCCACGTCAAGTCCATTTCACACTTCTTGTGAAATTAGGAATAAATTCTGCCTTTTCCATTTCCACCTATAAACTCCGCCAAAATTTTCATCAATCTCCAACGTTTAATCAATGGCTCGCGGTGAGATCTCTGTCCCCGTCTCACTCGTGGCGGTGGTGGTTCTAGTGGTGGCCGTTGCCTTCCTGGAGGCACAGGAGGTCCCAGACTGTGTTTCCAAGCTTACATCATGTGTGGATTTCCTCAAGTCCAATAATCCCCCGGCGACTTGCTGCGATCCCATCAAGGAAGCTGTGGCCACGCAGCTTCCCTGCCTTTGTAACCTGTATACGACGCCGGGTTTGTTGAATTCCTTCGGCGTTAATGTCACCGATGCTATTCATCTCACTAATGCTTGCGGCGTCCCTGTTGAACTCTCCAAGTGCAAAAGTAGGGATTAAACGTTGTTTTATTCTTCTTGATCTTCTCGTTGTTGATTTGAAATTTGATTGTTGTTTGATTATTGAATACAGCTGGTGCTCCGGCTCCGCAGCAGGGTGGTCCTTCACCACCGGGAGGTAATTTTCTCGAACTCGTACGGACCTTTTTTTTGGTCGAAAGAACTCGTAGGGCTGTTTTCGTCATTTCGGTTTCTTATTTTCATTTTCAAATTTGTTGAGATATTTATTTTTGTGAATATTTGAAGTTTATGACAGCTGGATTAATTTGCTGCATGAATTAAATCAATGTTCATCCGCTCTCACCAACCTTCACTTTTATTTATCAAAGTCTCCTATTAGTTCCATTTTAGCTTTTATATCTCCAAAAATTTTGTCATATCTTTTCTATTCATAATGTATTTAGTCTAAATTTTAAAAATATGTTACACGAAAATTATCATTTAATCTAACTCAGTTGTTTGACTACATCTAAGATTATTTGAAAATAGAGTAATTAAAATTTTAAAAAGTTTGAACTAAAATTGAATAAAACTTCAAGGGATTTGAATGGTATTCTTCTAAAAAAAAGTTAAATATGAAAATTATATTGAACTTTGTTATTTATTTATTTATTTTTAATATTATCTAACTCTATAAATGTTTTAAATATATATATATTAAGTAGAAAAATTTTAAAATTTTGAATCAATTAGAAATATGAAATGATGTGACGTGAAAGTATGTTTCTCTTTGAAGTGTTTTCTTTTTTTAAAAAAAATTAAGGGTAGTTTAATTTTAAAATGTTGATTAATCTTTGAAGGTCTTTAATGAACAAAAAATATATAAATAATGTTGTTTATAAAATTATTTGGTAAAATATTGTTGTTTTCAAACTTTATATTAATATAGCTATTTGGTCTTCTAGACAACCCTAGAAAATTAAAAACTATATGAGAAGATAACTTTGTAGTCTTGAAATTAAAAAATAAAAAATAAAAGAAAGAACTTTAGGGTTTGTTGAATTACTTTACTAGATGGGAAATCATTTTTTAAAGAGAGAAATTAAATGATTGTTGGAATATATTGGGAAATCTTAATGTGAAACCCTCTTTTTCTTTTCTATTTATTGTATTGTGAGCCCTGCCTAATTAATTTGAAAACTTATTGATTGTTCAAACCAAACCAAACAAGGAGCCCACTAATTTCCCAACCACTCTCTTACTTTAAATATTTTATTATTTTTCAAAATTTTAATCCATTTCTTTGTAGAAAATAGTGTATTTTGATTTTGAAAAGTATCAACAATAAATTGGAAAGTTATTGAAAATATAGTGGCAAAACTATTATTTTCAAACAAGTAATTAAACATAAAAATAAACAAAAAAACAAGCCAAAAATTTGCCTATAAAATTATTTTTAGAAATTAAGTATTCTTTGCATGTTTGGAAGAATTTTAGTTCATTGTTGAAGCCATTTTTAGATAGTCTATACACAATCACTCAAAAGCTAATAAACAAACTATATATAAAGTGGGACTGTGTAATAGAAAGTAAACTTAACTCGTCTTTGATTTCCTTTTTCTTGAAGTAGGTATGTGTTTAAATTGATCTGAAATAGATACGATTGTTGTTTCTGTACTCCATTTGATGTTTTACGTACTTAAATGGTATTGATTTGTGATTGTTTTTGGAACAGTTCCTGGAAATCATGCAGAAAAATTTGGGTTGACTGGAATTACATCAGTACTCGTATTCTTGGCCTCTCTAGCTTTTTATTAGGATCTTACCATACTTAGCCTTATTTGATTAAGCTATTATCCTAGTGAATAACGTTGATCAATTTTCTTTATATATTTTAGGGATTATAGTGAGTGTTCGAGACTTCATGTTTGAAGCATTTGTTAGATTGTCTTATATAATAATATGTTTTGTTCCTTTACCACAATATTTATTTTGATTTGAGTTATTATGGCCTAATTGGCTTGCTCATAGCCTCATTCCATCCCTTTCAATAATTTGTAATACAATTTTCTATTATATTTGAGTTTTAATATTCCCTCTTCATTCTCTCAATTCTTAGATATAACAATTAGATTAAGGTTGGTTAATGTTCATAAATATAACAAACGACAAAATATTTACGGTTGGTGTAACAAAAT

mRNA sequence

GCACGCTCTAATAAATCGCGTGAGAATTCTGTTTGATTTCCCACGTCAAGTCCATTTCACACTTCTTGTGAAATTAGGAATAAATTCTGCCTTTTCCATTTCCACCTATAAACTCCGCCAAAATTTTCATCAATCTCCAACGTTTAATCAATGGCTCGCGGTGAGATCTCTGTCCCCGTCTCACTCGTGGCGGTGGTGGTTCTAGTGGTGGCCGTTGCCTTCCTGGAGGCACAGGAGGTCCCAGACTGTGTTTCCAAGCTTACATCATGTGTGGATTTCCTCAAGTCCAATAATCCCCCGGCGACTTGCTGCGATCCCATCAAGGAAGCTGTGGCCACGCAGCTTCCCTGCCTTTGTAACCTGTATACGACGCCGGGTTTGTTGAATTCCTTCGGCGTTAATGTCACCGATGCTATTCATCTCACTAATGCTTGCGGCGTCCCTGTTGAACTCTCCAAGTGCAAAACTGGTGCTCCGGCTCCGCAGCAGGGTGGTCCTTCACCACCGGGAGTTCCTGGAAATCATGCAGAAAAATTTGGGTTGACTGGAATTACATCAGTACTCGTATTCTTGGCCTCTCTAGCTTTTTATTAGGATCTTACCATACTTAGCCTTATTTGATTAAGCTATTATCCTAGTGAATAACGTTGATCAATTTTCTTTATATATTTTAGGGATTATAGTGAGTGTTCGAGACTTCATGTTTGAAGCATTTGTTAGATTGTCTTATATAATAATATGTTTTGTTCCTTTACCACAATATTTATTTTGATTTGAGTTATTATGGCCTAATTGGCTTGCTCATAGCCTCATTCCATCCCTTTCAATAATTTGTAATACAATTTTCTATTATATTTGAGTTTTAATATTCCCTCTTCATTCTCTCAATTCTTAGATATAACAATTAGATTAAGGTTGGTTAATGTTCATAAATATAACAAACGACAAAATATTTACGGTTGGTGTAACAAAAT

Coding sequence (CDS)

ATGGCTCGCGGTGAGATCTCTGTCCCCGTCTCACTCGTGGCGGTGGTGGTTCTAGTGGTGGCCGTTGCCTTCCTGGAGGCACAGGAGGTCCCAGACTGTGTTTCCAAGCTTACATCATGTGTGGATTTCCTCAAGTCCAATAATCCCCCGGCGACTTGCTGCGATCCCATCAAGGAAGCTGTGGCCACGCAGCTTCCCTGCCTTTGTAACCTGTATACGACGCCGGGTTTGTTGAATTCCTTCGGCGTTAATGTCACCGATGCTATTCATCTCACTAATGCTTGCGGCGTCCCTGTTGAACTCTCCAAGTGCAAAACTGGTGCTCCGGCTCCGCAGCAGGGTGGTCCTTCACCACCGGGAGTTCCTGGAAATCATGCAGAAAAATTTGGGTTGACTGGAATTACATCAGTACTCGTATTCTTGGCCTCTCTAGCTTTTTATTAG

Protein sequence

MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEAVATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPGVPGNHAEKFGLTGITSVLVFLASLAFY

Homology

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BLAST of CsGy3G003000 vs. NCBI nr
Match: XP_004147939.1 (PREDICTED: lipid transfer-like protein VAS [Cucumis sativus] >KGN55906.1 hypothetical protein Csa_3G035840 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60
           MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA
Sbjct: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60

Query: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG 120
           VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG
Sbjct: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG 120

Query: 121 VPGNHAEKFGLTGITSVLVFLASLAFY 148
           VPGNHAEKFGLTGITS+LVFLASLAFY
Sbjct: 121 VPGNHAEKFGLTGITSLLVFLASLAFY 147

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BLAST of CsGy3G003000 vs. NCBI nr
Match: XP_008448898.1 (PREDICTED: non-specific lipid-transfer protein 1 [Cucumis melo])

HSP 1 Score: 254.2 bits (648), Expect = 2.7e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60
           MA GEISVP ++VAVVVL VAV F+EAQ+VPDCVSKLT CVDFLKSNNPPATCCDPIKEA
Sbjct: 1   MAGGEISVPFAVVAVVVLAVAVGFVEAQDVPDCVSKLTPCVDFLKSNNPPATCCDPIKEA 60

Query: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG 120
           VATQLPCLCNLY TPGLLNSFGVNV+DAIHLTNACGVPVELSKCKTGAPAPQQG PSPPG
Sbjct: 61  VATQLPCLCNLYVTPGLLNSFGVNVSDAIHLTNACGVPVELSKCKTGAPAPQQGAPSPPG 120

Query: 121 VPGNHAEKFGLTGITS-VLVFLASLAFY 148
           VPGN A+KFG TGITS VL+FLASL  Y
Sbjct: 121 VPGNDAQKFGSTGITSLVLLFLASLVVY 148

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BLAST of CsGy3G003000 vs. NCBI nr
Match: XP_022965217.1 (non-specific lipid transfer protein-like 1 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33
Identity = 84/148 (56.76%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60
           MA   +SV               F+EAQ+ PDC SKL  C +FLKSNNPPATCC+PIKEA
Sbjct: 1   MAGSLVSVXXXXXXXXXXXXXXGFVEAQQ-PDCASKLADCANFLKSNNPPATCCNPIKEA 60

Query: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPS-PP 120
           VATQL CLCNLYT+P   +S GVNV+DA+HLT ACGV  +LSKCKTGAPAP  G PS P 
Sbjct: 61  VATQLDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKTGAPAPSHGAPSLPA 120

Query: 121 GVPGNHAEKFGLTGITSVLVFLASLAFY 148
           GV           G T +L+F  SL FY
Sbjct: 121 GV-----------GFTLLLLFFVSLVFY 136

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BLAST of CsGy3G003000 vs. NCBI nr
Match: XP_022923450.1 (non-specific lipid transfer protein-like 1 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 24  FLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEAVATQLPCLCNLYTTPGLLNSFGV 83
           F+EAQ+ PDC SKL SC +FLKSNNPPATCC+PIKEAVATQL CLCNLYT+P   +S GV
Sbjct: 20  FVEAQQ-PDCASKLASCAEFLKSNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGV 79

Query: 84  NVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPGVPGNHAEKFGLTGITSVLVFLAS 143
           NV+DA+HLT ACGVPV+LSKCKTGAPAP                   + G T +L+F  S
Sbjct: 80  NVSDALHLTKACGVPVDLSKCKTGAPAPSXXXXXXXXXXXXLP---AVGGFTFLLLFFVS 139

Query: 144 LAFY 148
           L FY
Sbjct: 140 LVFY 139

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BLAST of CsGy3G003000 vs. NCBI nr
Match: XP_023552770.1 (non-specific lipid transfer protein-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 24  FLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEAVATQLPCLCNLYTTPGLLNSFGV 83
           F+EAQ+ PDC SKL +C +FLKSNNPPATCC+PIKEAVATQL CLCNLYT+P   +S GV
Sbjct: 25  FVEAQQ-PDCASKLATCAEFLKSNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGV 84

Query: 84  NVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPGVPGNHAEKFGLTGITSVLVFLAS 143
           NV+DA+HLT ACGVPV+L+KCKTGAPAP                   + G T +L+F  S
Sbjct: 85  NVSDALHLTKACGVPVDLAKCKTGAPAPSXXXXXXXXXXXXLP---AVGGFTFLLLFFVS 144

Query: 144 LAFY 148
           L FY
Sbjct: 145 LIFY 144

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BLAST of CsGy3G003000 vs. TAIR10
Match: AT1G62790.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 16  VVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPA-TCCDPIKEAVATQLPCLCNLYTT 75
           V+ ++ V  +EAQ   +CVSKL  C + L +   P   CCD IKEAV  +L CLC +YT+
Sbjct: 14  VMALLLVPTIEAQ--TECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELTCLCTIYTS 73

Query: 76  PGLLNSFGVNVTDAIHLTNACGVPVELSKCKT-GAPAPQQGGPSPPGVPGNHAEKFGL-- 135
           PGLL  F V    A+ L+  C V  +LS C   GAP+P+   P PP   GN  +  G   
Sbjct: 74  PGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLP-PPAPAGNTKKDAGAGN 133

Query: 136 ----TGITSVLVFLASLAFY 148
                G+T+V++ L S  F+
Sbjct: 134 KLAGYGVTTVILSLISSIFF 150

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BLAST of CsGy3G003000 vs. TAIR10
Match: AT1G70250.1 (receptor serine/threonine kinase, putative)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 14  AVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPAT-CCDPIKEAVATQLPCLCNLY 73
           A+++  V V  +E +   +CVSK+  C  FL +   P+T CC+ IKEA+     CLC +Y
Sbjct: 4   AMMIFAVLVTVVEVEAQTECVSKIVPCFRFLNTTTKPSTDCCNSIKEAMEKDFSCLCTIY 63

Query: 74  TTPGLLNSFGVNVTDAIHLTNACGVPVELSKC 105
            TPGLL  F +    A+ L   CGV  +LS C
Sbjct: 64  NTPGLLAQFNITTDQALGLNLRCGVNTDLSAC 95

[Close]

BLAST of CsGy3G003000 vs. TAIR10
Match: AT1G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-11
Identity = 33/92 (35.87%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 26  EAQEVPDCVSKLTSCVDFLK-SNNPPATCCDPIKEAVATQLPCLCNLYTTPGLLNSFGVN 85
           +A  +P C+ KL  C  +L  +  PPATCC P+ E VA    CLC ++    +L S  + 
Sbjct: 35  DAHSLP-CIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLT 94

Query: 86  VTDAIHLTNACGVPVELSKCKTGAPAPQQGGP 117
             +A+ L  ACG   ++S CKT A       P
Sbjct: 95  KENALDLPKACGAKADVSLCKTSAGTNSSSTP 125

[Close]

BLAST of CsGy3G003000 vs. TAIR10
Match: AT1G05450.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08
Identity = 34/94 (36.17%), Postives = 44/94 (46.81%), Query Frame = 0


Query: 31  PDCVSKLTSCVDFLKSNN--PPATCCDPIKEAVATQLPCLCNLYTTPGLLNSFGVNVTDA 90
           P  +S +T C  FL      P + CC  +K    T + CLC L  T G+  S  +N T A
Sbjct: 35  PSMLSSVTGCTSFLTGGGSFPTSDCCGALKSLTGTGMDCLC-LIVTAGVPISIPINRTLA 94

Query: 91  IHLTNACGVPVELSKCKTGA-----PAPQQGGPS 118
           I L  ACG+P    +CK  A     P P   GP+
Sbjct: 95  ISLPRACGIPGVPVQCKASAAPLPTPGPASFGPT 127

[Close]

BLAST of CsGy3G003000 vs. TAIR10
Match: AT1G73550.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 33/106 (31.13%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 8   VPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLK-SNNPPATCCDPIKEAVATQLP 67
           V   ++   V V A  F + Q+   CV+KL  C  ++  S  PP  CC+P+K+     + 
Sbjct: 10  VTTVVILYSVQVTAQFFGDVQQAMRCVAKLMPCQPYIHLSIPPPPLCCNPMKQIAEKDVS 69

Query: 68  CLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKC-KTGAPAP 112
           CLC  +  P LL    +   +AI + ++CG+  + S C KT   +P
Sbjct: 70  CLCTAFKHPDLLRFLALTKENAIKILDSCGINHDPSVCNKTNPSSP 115

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BLAST of CsGy3G003000 vs. TrEMBL
Match: tr|A0A0A0L702|A0A0A0L702_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G035840 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.9e-75
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60
           MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA
Sbjct: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60

Query: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG 120
           VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG
Sbjct: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG 120

Query: 121 VPGNHAEKFGLTGITSVLVFLASLAFY 148
           VPGNHAEKFGLTGITS+LVFLASLAFY
Sbjct: 121 VPGNHAEKFGLTGITSLLVFLASLAFY 147

[Close]

BLAST of CsGy3G003000 vs. TrEMBL
Match: tr|A0A1S3BK67|A0A1S3BK67_CUCME (non-specific lipid-transfer protein 1 OS=Cucumis melo OX=3656 GN=LOC103490924 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.8e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MARGEISVPVSLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEA 60
           MA GEISVP ++VAVVVL VAV F+EAQ+VPDCVSKLT CVDFLKSNNPPATCCDPIKEA
Sbjct: 1   MAGGEISVPFAVVAVVVLAVAVGFVEAQDVPDCVSKLTPCVDFLKSNNPPATCCDPIKEA 60

Query: 61  VATQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPG 120
           VATQLPCLCNLY TPGLLNSFGVNV+DAIHLTNACGVPVELSKCKTGAPAPQQG PSPPG
Sbjct: 61  VATQLPCLCNLYVTPGLLNSFGVNVSDAIHLTNACGVPVELSKCKTGAPAPQQGAPSPPG 120

Query: 121 VPGNHAEKFGLTGITS-VLVFLASLAFY 148
           VPGN A+KFG TGITS VL+FLASL  Y
Sbjct: 121 VPGNDAQKFGSTGITSLVLLFLASLVVY 148

[Close]

BLAST of CsGy3G003000 vs. TrEMBL
Match: tr|A0A2P4J8V5|A0A2P4J8V5_QUESU (Lipid transfer-like protein vas OS=Quercus suber OX=58331 GN=CFP56_58000 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 13  VAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEAVATQLPCLCNLY 72
           + VVVL++  +  +AQ   DC SKL  C  ++ S +PPA+CC+PIKEAVATQLPCLC LY
Sbjct: 12  IFVVVLMMVTSVAKAQ-TADCASKLVPCASYINSTSPPASCCNPIKEAVATQLPCLCGLY 71

Query: 73  TTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGGPSPPGVP---GNHAEKF 132
           + P +L S GV V  A++LT ACGV  ++SKC   AP+P  G  +P GVP   GN A + 
Sbjct: 72  SNPSVLKSLGVTVAQALNLTRACGVSTDISKCNATAPSPSSGSVTPSGVPGSDGNGAGRI 131

Query: 133 GLTGITSVLVFLASLAFY 148
             TG +++  FLAS+ FY
Sbjct: 132 AWTGFSTLFFFLASMMFY 148

[Close]

BLAST of CsGy3G003000 vs. TrEMBL
Match: tr|A0A2P2JA98|A0A2P2JA98_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 68/147 (46.26%), Postives = 94/147 (63.95%), Query Frame = 0


Query: 11  SLVAVVVLVVAVAFL-------EAQEVPDCVSKLTSCVDFLKS-NNPPATCCDPIKEAVA 70
           S++  +++V+AVAF         AQ +P C +KL  C D+L S   PP++CC+P+KEAV 
Sbjct: 4   SMMLSLLVVMAVAFFVGSTTLTSAQNIPSCATKLIPCSDYLNSTTKPPSSCCNPVKEAVD 63

Query: 71  TQLPCLCNLYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQQGG--PSPPG 130
            +LPCLCNLY  PGLL+SFGVNVT A+ ++  CGV  +LS C   A AP   G   +PP 
Sbjct: 64  KELPCLCNLYKNPGLLSSFGVNVTQALQISQRCGVKADLSVCNKAATAPAPAGLQGTPPP 123

Query: 131 VPGNHAEKFGLTGITSVLVFLASLAFY 148
            PGN   +   TG TS+++ LAS +F+
Sbjct: 124 APGNEGSRMAWTGFTSLVLLLASFSFH 150

[Close]

BLAST of CsGy3G003000 vs. TrEMBL
Match: tr|A0A2P5F570|A0A2P5F570_9ROSA (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_112170 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-26
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 11  SLVAVVVLVVAVAFLEAQEVPDCVSKLTSCVDFLKSNNPPATCCDPIKEAVATQLPCLCN 70
           ++VA++V+V+AV      + P C + L  CVD L +  P A CC+ IK+AVAT+L CLC 
Sbjct: 7   TMVAILVVVMAVLSAVEAQTPSCANNLVDCVDSLNATKPEAKCCNSIKQAVATELSCLCT 66

Query: 71  LYTTPGLLNSFGVNVTDAIHLTNACGVPVELSKCKTGAPAPQ-QGGPSPPGVPGNHAEKF 130
           LY TPGLL SFGV V  A+ LT  CGVPV+L +CK+ AP PQ Q  P  PG  GN A + 
Sbjct: 67  LYNTPGLLQSFGVTVAQALGLTQKCGVPVKLDQCKSAAPTPQSQPTPGVPGSDGNGAGRA 126

Query: 131 GLTGITSVLVFLASLAFY 148
             TG++++ +   S+ FY
Sbjct: 127 VWTGMSTLFLVSVSMLFY 144

The following BLAST results are available for this feature:

BLAST of CsGy3G003000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147939.1	4.4e-75	99.32	PREDICTED: lipid transfer-like protein VAS [Cucumis sativus] >KGN55906.1 hypothe...	[more]
XP_008448898.1	2.7e-64	87.16	PREDICTED: non-specific lipid-transfer protein 1 [Cucumis melo]	[more]
XP_022965217.1	1.4e-33	56.76	non-specific lipid transfer protein-like 1 [Cucurbita maxima]	[more]
XP_022923450.1	1.9e-33	62.10	non-specific lipid transfer protein-like 1 [Cucurbita moschata]	[more]
XP_023552770.1	1.2e-32	60.48	non-specific lipid transfer protein-like 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G003000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62790.1	2.3e-17	40.00	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G70250.1	1.8e-14	40.22	receptor serine/threonine kinase, putative	[more]
AT1G18280.1	7.1e-11	35.87	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G05450.2	4.3e-08	36.17	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G73550.1	1.6e-07	31.13	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of CsGy3G003000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G003000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L702\|A0A0A0L702_CUCSA	2.9e-75	99.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G035840 PE=4 SV=1	[more]
tr\|A0A1S3BK67\|A0A1S3BK67_CUCME	1.8e-64	87.16	non-specific lipid-transfer protein 1 OS=Cucumis melo OX=3656 GN=LOC103490924 PE...	[more]
tr\|A0A2P4J8V5\|A0A2P4J8V5_QUESU	4.1e-29	50.00	Lipid transfer-like protein vas OS=Quercus suber OX=58331 GN=CFP56_58000 PE=3 SV...	[more]
tr\|A0A2P2JA98\|A0A2P2JA98_RHIMU	2.9e-27	46.26	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2P5F570\|A0A2P5F570_9ROSA	2.5e-26	47.83	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G003000.1	CsGy3G003000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 31..112 e-value: 3.1E-12 score: 48.1
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 13..142
None	No IPR available	PANTHER	PTHR33044:SF37	SUBFAMILY NOT NAMED	coord: 13..142
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 37..97 e-value: 4.2436E-13 score: 59.7479
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 15..104 e-value: 3.4E-16 score: 59.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 31..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G003000	Cla005682	Watermelon (97103) v1	cgybwmB184
CsGy3G003000	Csa3G035840	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G003000	MELO3C013976	Melon (DHL92) v3.5.1	cgybmeB209
CsGy3G003000	ClCG10G003060	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G003000	CSPI03G03070	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G003000	CmaCh16G010500	Cucurbita maxima (Rimu)	cgybcmaB340
CsGy3G003000	CmoCh16G010980	Cucurbita moschata (Rifu)	cgybcmoB311
CsGy3G003000	Lsi07G013370	Bottle gourd (USVL1VR-Ls)	cgyblsiB217
CsGy3G003000	Cp4.1LG14g08690	Cucurbita pepo (Zucchini)	cgybcpeB326
CsGy3G003000	MELO3C013976.2	Melon (DHL92) v3.6.1	cgybmedB202
CsGy3G003000	CsaV3_3G003100	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G003000	Cla97C10G187590	Watermelon (97103) v2	cgybwmbB174
CsGy3G003000	BhiUN285G22	Wax gourd	cgybwgoB256
CsGy3G003000	Carg25268	Silver-seed gourd	carcgybB0852

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G003000	Bottle gourd (USVL1VR-Ls)	cgyblsiB142
CsGy3G003000	Melon (DHL92) v3.5.1	cgybmeB139
CsGy3G003000	Melon (DHL92) v3.6.1	cgybmedB136
CsGy3G003000	Watermelon (Charleston Gray)	cgybwcgB192
CsGy3G003000	Watermelon (97103) v1	cgybwmB248
CsGy3G003000	Wild cucumber (PI 183967)	cgybcpiB131
CsGy3G003000	Silver-seed gourd	carcgybB0855
CsGy3G003000	Cucumber (Chinese Long) v3	cgybcucB134
CsGy3G003000	Watermelon (97103) v2	cgybwmbB170
CsGy3G003000	Wax gourd	cgybwgoB246
CsGy3G003000	Cucumber (Gy14) v2	cgybcgybB090
CsGy3G003000	Cucurbita maxima (Rimu)	cgybcmaB324
CsGy3G003000	Cucurbita maxima (Rimu)	cgybcmaB438
CsGy3G003000	Cucurbita moschata (Rifu)	cgybcmoB295
CsGy3G003000	Cucurbita moschata (Rifu)	cgybcmoB409
CsGy3G003000	Cucurbita pepo (Zucchini)	cgybcpeB313
CsGy3G003000	Cucurbita pepo (Zucchini)	cgybcpeB445
CsGy3G003000	Cucumber (Chinese Long) v2	cgybcuB129