CsGy3G002060 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTGAATTAAAGGTGGAATGTAACTTCAATCGGTGCATGGGTACAGTAATCGACTTGCCAAACACGCTCACAACAAAAAATATTTTCATGGGACTCTATCTTCACGTGCTGCTCACGTGTTTAATCCTTTTGCTCGTCACCGACTGAGCCGGCCGAGGGTTTATTATTCACCGGGGAAGAGCGCGGCGGCGAGAGAACAAACATGGAGACGGCGGAAACAGCCGGTGCAAAAGGATTGAGTTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGGAAGATCTTTACTTTCCTCGTGCTCTTCAATCCACTGCCTCGAATCCGTCTCAGCGCAAGGCCATTCTGCTCGACCTTCTTTCTCGCGATGTCGCCGTATTTCTTGGTTCTCTCTCTCTCTCTCTCTATAATTCTGTATTTTTTTTTGCAATTTCTGGCATGGATTTCTGTTGTATGTTGATTATTTCATCTGAAGTTATAAGATCCCTAGCTTACTTTATCGAATTGGAACAAAATAAAGGGAGATTTTGAAGGAGTAGATTTATGCTTGTTTTATATGGTAGAGTGTCAGAATTCTGAGTCGCATGGTTCCATTTAGCTCATAGTGTAATGGATGAAAAAATGACACTAGTTACATTAGAAGATTGAACTCCATTTGTTTTTTGAAAATTAAGTTATAAACTTACTTCCACTTTTTCTTTGTTTTGCTAAGAATTCAATTTTTGGTTGAGGAAGGATGAAAACAAAGGTAAGAAAATGCTGAGGAAACAAACAAGTAGAATTTTTTAGTATTGAATGTTTATCAAAGGAGACTCTGTAGAATGAAGCAGTGAATACCAAATTATAAAATAATAGTGGTTTTAATTTCTTTTCATGTGTTTGGGTGTTTTACAGTCGAGAGGAAGGAATAAATTTTGATGCATTAGTTCTTTTGTTATTTATGAAGCAATTTTCTTGTAGGTTTTTTGAATCATTTTTAAGCTTTGAAAACGAAAGAGTTCAGCATCTCCTTCATTTGCACACTTTTTGCTACTGGAAATGAGGGGGGAAAATAACTTTGGCTTTATTTGAATTATGGGAAACAAATGTCTTGAATTCATAACATATAGAAACTGATTTGGTAATTAGTTTGATTTTAATCCTTGAATGCTGCTTCTTTCTGTTCATTTTAAATATTCTAATGTTTGTTGCACCTCTAACTTCAATTGATGTAGAACGATATGGATCACAGTTGACATCCAATGAACTGCATGAGTTTGATGCTCTCAAGGACGATTACGAGATCAATTGGCATTTAAAGCACCTTCGGAGTATAAAGAACCCAACATCAGATGAATTACACACTAGGTCAGTTATTGTGAAAAATAGGAGACGGGCATATCTAAATAAATTGATATATGATGGTCAGTACTTTTCGGAGGATGCAATGAGGGAGAGAGAGCCTTTCTTGCATCATGAGTATGTAGGGAAGTTTCAAGATCCAAGTGGGAGAGGAATGGCAAGACCAGGGGAAAGGTGGTCAGAGACTCTGATGAGGAGATCAGAAGAAGCAATGTTGGTTGCTAAGATCAGAGGAGAGCAACGCAGGTTAGGTGTTGCTGAGAGGGACTTGGTAGGTAATAATGTAAATCAAGGGGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAGGAAGAGAAAGAGGAAGTGGGGGAGGACACGAAAGGTAATAATAAGCTTGCGAATGGAGCTGATTCCATGGAGGTAATTTTGTGTTATCTCTTTTGTCTCATCCTTTGATTTCCTTTACAAATAACTTTTTTTTTATTAGTTTGATTATTCTGGTTGGCTTGCTTAACTGGTTTTTAGATCAGTCTTATGATTTATTCTGCCTTGTTCATTATTCTTCTCCTTTTGCAATCTGAAGTCCTGCCTATTTAACCAATACCAGGCTTTTAATGCTTATAATTTTTTTTTGGATATTAATGTTTTATACATCTGATCATTGTGGATTGAACGAAATAACATATCTGAATGCATTATGCTTTGTGGAGATCACTTGTCCTCGATAATGAGTTGTTTGACATTTGATGCTTTCGCTTGTAGATAACAAGGGCCATGGATGATCAGCATGAAATGCCAGCAACAGAGAATAGTGAAGCTGCTGAGGGTGGGTCTAATCATGTAGCAACTTTATCTGAAGCAGATATGCAAGATCAGATGGATCAATTCACATATATCATGCATCAGAAATTTTTGTTGGGAGAAGACAACGAGCATTTAGATTACTCAAAAATAGACAATGATGAGACCTTGGACGATCACTGGATGAGGGAAGCCAATGATGATGCCGAGGAGAAATACTTCGATGAAGATTAGAGCGAACGAAAGGTGCAGTTCCTTTCATCTAATTGTAAAAAATTTATGTTAAATTGGTACCTGTATATCAGATGCTTTCTGGCCTTTTATATTTTATAACCTCTCAAACTTTCTAGTGTTTAAGCATGGAAATACATAGATAGTGACAAGTCTTTCTTCTTTAATCTGAGAGTAGAATTTGAATTCCTGTTAGACTGCTTTTAGAATGTGCTCAATTTAACTATTAGATGCCAAAGGACGGGTGTAAGTTCAAATAGGAGCACTCCTTATTTTGTCTTTAATCTTTCAAAAGACCTGTTTTTGTATTTGAATTTAGGGATCCTTTCCGTTTTCGTCAAAAAATGTTTAGGGTAGTACCTATTCAAAAACTAATTACTTTGTCCTTTTGCTGTTATACGGTTGCAAACTTTTTCAACAAATTGAAAATATGAATTCAAGTATGTGATAGTTTGGTTTTGACATGTATTGAGTGAGCGAATATTTGAGTGTAGAGATTTTAGAAGTATAAAGGTTAAAATAAAAACTGGATTACTTTTTGAAAGTTGAAATTAGAAGACATTTTGAAAGTACAAAGACTAAAATAAAACTTGTAGAATCCTCGTCACGGGTAGACAAGTTGAGTGATGCATTTTCTAGTTTCTACTAATGTACTCATTTATCTTGCCAAATACTAAATACTGGAAAATTCTATATGAGTCTTTCAATTGTGACTTCTTTTACATGTCAGAATTAACATTTATGCTAATCTTTTGTTTTATTTTTATTACAACAGTTAGTTCTTATTCAGATCAGGGAACTGGAGAAACATAAGAAGAAATGCGATTACGAACAAGTTTACTATGATCTGTGATGAGATGATGAATGCCACTGAAAGACTCCAGTGAACGATATCATAACTCTGGTAAGATTCAGAAATGGTTACTTTAACGGCATGGAGTTTGGCATTAGCGTTTTGCAGTTTCATTGGCTTTTTGTTTCTCACAGAAGAAAGAAAGTTGGCGAAATGGATAGAGAAAACGTTCTAATGAAATCGATAGGGAGAAATTGGGTTGCTTGGTATTGGCATATGGCTCAACTGAAATCTCGTAGTTCTGTTCATGTTCTTTATGGAATGTGTGAATAGTGATTGTGATCATTATTGGCCTTCTAACTCTCAATCTGTTCATGAACAATGTTGTATAAAAAGTGATTTTTTTTTTCTATTATATTACATGATAGTTATCAAATTACATTCTTATCTTAAATTGA CTTGAATTAAAGGTGGAATGTAACTTCAATCGGTGCATGGGTACAGTAATCGACTTGCCAAACACGCTCACAACAAAAAATATTTTCATGGGACTCTATCTTCACGTGCTGCTCACGTGTTTAATCCTTTTGCTCGTCACCGACTGAGCCGGCCGAGGGTTTATTATTCACCGGGGAAGAGCGCGGCGGCGAGAGAACAAACATGGAGACGGCGGAAACAGCCGGTGCAAAAGGATTGAGTTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGGAAGATCTTTACTTTCCTCGTGCTCTTCAATCCACTGCCTCGAATCCGTCTCAGCGCAAGGCCATTCTGCTCGACCTTCTTTCTCGCGATGTCGCCGTATTTCTTGAACGATATGGATCACAGTTGACATCCAATGAACTGCATGAGTTTGATGCTCTCAAGGACGATTACGAGATCAATTGGCATTTAAAGCACCTTCGGAGTATAAAGAACCCAACATCAGATGAATTACACACTAGGTCAGTTATTGTGAAAAATAGGAGACGGGCATATCTAAATAAATTGATATATGATGGTCAGTACTTTTCGGAGGATGCAATGAGGGAGAGAGAGCCTTTCTTGCATCATGAGTATGTAGGGAAGTTTCAAGATCCAAGTGGGAGAGGAATGGCAAGACCAGGGGAAAGGTGGTCAGAGACTCTGATGAGGAGATCAGAAGAAGCAATGTTGGTTGCTAAGATCAGAGGAGAGCAACGCAGGTTAGGTGTTGCTGAGAGGGACTTGGTAGGTAATAATGTAAATCAAGGGGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAGGAAGAGAAAGAGGAAGTGGGGGAGGACACGAAAGGTAATAATAAGCTTGCGAATGGAGCTGATTCCATGGAGATAACAAGGGCCATGGATGATCAGCATGAAATGCCAGCAACAGAGAATAGTGAAGCTGCTGAGGGTGGGTCTAATCATTTAGTTCTTATTCAGATCAGGGAACTGGAGAAACATAAGAAGAAATGCGATTACGAACAATTATCAAATTACATTCTTATCTTAAATTGA ATGGAGACGGCGGAAACAGCCGGTGCAAAAGGATTGAGTTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGGAAGATCTTTACTTTCCTCGTGCTCTTCAATCCACTGCCTCGAATCCGTCTCAGCGCAAGGCCATTCTGCTCGACCTTCTTTCTCGCGATGTCGCCGTATTTCTTGAACGATATGGATCACAGTTGACATCCAATGAACTGCATGAGTTTGATGCTCTCAAGGACGATTACGAGATCAATTGGCATTTAAAGCACCTTCGGAGTATAAAGAACCCAACATCAGATGAATTACACACTAGGTCAGTTATTGTGAAAAATAGGAGACGGGCATATCTAAATAAATTGATATATGATGGTCAGTACTTTTCGGAGGATGCAATGAGGGAGAGAGAGCCTTTCTTGCATCATGAGTATGTAGGGAAGTTTCAAGATCCAAGTGGGAGAGGAATGGCAAGACCAGGGGAAAGGTGGTCAGAGACTCTGATGAGGAGATCAGAAGAAGCAATGTTGGTTGCTAAGATCAGAGGAGAGCAACGCAGGTTAGGTGTTGCTGAGAGGGACTTGGTAGGTAATAATGTAAATCAAGGGGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAGGAAGAGAAAGAGGAAGTGGGGGAGGACACGAAAGGTAATAATAAGCTTGCGAATGGAGCTGATTCCATGGAGATAACAAGGGCCATGGATGATCAGCATGAAATGCCAGCAACAGAGAATAGTGAAGCTGCTGAGGGTGGGTCTAATCATTTAGTTCTTATTCAGATCAGGGAACTGGAGAAACATAAGAAGAAATGCGATTACGAACAATTATCAAATTACATTCTTATCTTAAATTGA METAETAGAKGLSCEAMDCLSERLSLQEDLYFPRALQSTASNPSQRKAILLDLLSRDVAVFLERYGSQLTSNELHEFDALKDDYEINWHLKHLRSIKNPTSDELHTRSVIVKNRRRAYLNKLIYDGQYFSEDAMREREPFLHHEYVGKFQDPSGRGMARPGERWSETLMRRSEEAMLVAKIRGEQRRLGVAERDLVGNNVNQGEEEEEEEEEEEEEEEEEEEEEEEEAEEEKEEVGEDTKGNNKLANGADSMEITRAMDDQHEMPATENSEAAEGGSNHLVLIQIRELEKHKKKCDYEQLSNYILILN
BLAST of CsGy3G002060 vs. NCBI nr
Match: XP_011650370.1 (PREDICTED: YTH domain-containing protein 1 [Cucumis sativus]) HSP 1 Score: 453.0 bits (1164), Expect = 8.2e-124 Identity = 275/314 (87.58%), Postives = 283/314 (90.13%), Query Frame = 0
BLAST of CsGy3G002060 vs. NCBI nr
Match: XP_008448764.1 (PREDICTED: coiled-coil domain-containing protein 97 [Cucumis melo]) HSP 1 Score: 428.7 bits (1101), Expect = 1.7e-116 Identity = 263/312 (84.29%), Postives = 274/312 (87.82%), Query Frame = 0
BLAST of CsGy3G002060 vs. NCBI nr
Match: KGN55812.1 (hypothetical protein Csa_3G017060 [Cucumis sativus]) HSP 1 Score: 410.2 bits (1053), Expect = 6.1e-111 Identity = 280/451 (62.08%), Postives = 288/451 (63.86%), Query Frame = 0
BLAST of CsGy3G002060 vs. NCBI nr
Match: XP_022155554.1 (coiled-coil domain-containing protein 97 [Momordica charantia]) HSP 1 Score: 389.8 bits (1000), Expect = 8.5e-105 Identity = 241/303 (79.54%), Postives = 257/303 (84.82%), Query Frame = 0
BLAST of CsGy3G002060 vs. NCBI nr
Match: XP_022935567.1 (coiled-coil domain-containing protein 97 [Cucurbita moschata]) HSP 1 Score: 384.0 bits (985), Expect = 4.7e-103 Identity = 238/301 (79.07%), Postives = 261/301 (86.71%), Query Frame = 0
BLAST of CsGy3G002060 vs. TAIR10
Match: AT5G47090.1 (unknown protein) HSP 1 Score: 256.9 bits (655), Expect = 1.6e-68 Identity = 127/183 (69.40%), Postives = 156/183 (85.25%), Query Frame = 0
BLAST of CsGy3G002060 vs. Swiss-Prot
Match: sp|Q9DBT3|CCD97_MOUSE (Coiled-coil domain-containing protein 97 OS=Mus musculus OX=10090 GN=Ccdc97 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 8.7e-08 Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 0
BLAST of CsGy3G002060 vs. Swiss-Prot
Match: sp|Q96F63|CCD97_HUMAN (Coiled-coil domain-containing protein 97 OS=Homo sapiens OX=9606 GN=CCDC97 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.5e-07 Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0
BLAST of CsGy3G002060 vs. TrEMBL
Match: tr|A0A1S3BKG3|A0A1S3BKG3_CUCME (coiled-coil domain-containing protein 97 OS=Cucumis melo OX=3656 GN=LOC103490832 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 1.1e-116 Identity = 263/312 (84.29%), Postives = 274/312 (87.82%), Query Frame = 0
BLAST of CsGy3G002060 vs. TrEMBL
Match: tr|A0A0A0L5C7|A0A0A0L5C7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017060 PE=4 SV=1) HSP 1 Score: 410.2 bits (1053), Expect = 4.0e-111 Identity = 280/451 (62.08%), Postives = 288/451 (63.86%), Query Frame = 0
BLAST of CsGy3G002060 vs. TrEMBL
Match: tr|F6HTF2|F6HTF2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0012g00030 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81 Identity = 151/184 (82.07%), Postives = 174/184 (94.57%), Query Frame = 0
BLAST of CsGy3G002060 vs. TrEMBL
Match: tr|A0A2I0I3W8|A0A2I0I3W8_PUNGR (Uncharacterized protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_041501 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 7.0e-79 Identity = 153/201 (76.12%), Postives = 174/201 (86.57%), Query Frame = 0
BLAST of CsGy3G002060 vs. TrEMBL
Match: tr|A0A218XUN9|A0A218XUN9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr003731 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 7.0e-79 Identity = 153/201 (76.12%), Postives = 174/201 (86.57%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |