CsGy2G027160 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G027160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Binding partner of ACD11 1
Location	Chr2 : 34736058 .. 34738798 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAAGATAAGTCTAAGTTGATCCGAAATATCAAAAGAAAAAGGAAAGAAATAAAGAAATGGAATGAGTCAGTTTTTTATTTTATTTTGCCATATGTATTACTACGAACCTAAACAACCGCCAAGCCACAACACAACTCTCAGGGCATTCTTCCTTCTTCTTTTCTCCTCTTTCTCTCTCTCTCTCTAAGAATTTGAATTGGCAAATCTCTCAGGTGAATCAAACAGAAGAATCATGGCGGTACGTGTTCAATTTTTTGTTTCTTTTCTGTTCATTGTCTTCTCAATCTGTTTAATTTCTTGCGATTTTATTGATCTGATGCCTTAGTTCTACTTGTTATCAATATCAATTATGATTTAAGAATCAATCGCCAATTTTCACTCTTCTTTCCCGTAATTTCTTATGAGCTGTATTGAGGAGATGGAAATTGCGTTTTTTCGGTGTCTTAATGGCAAAAGACTGGAAGTAAAATTTCGAACGATGAAGGAGGAAGTTATGATACACCGAAACGAAAACTGTTGAAATTCGGCTTTGATTTTGGTTTTTTTTTTTGTTGAATTGTTAAAGTTTGTTTGTTTTTTTTTTTTCTTCTTTTTTGTTGTTTATGGTGGTTACAGACGAGGACGGTGAGAGTTACCAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTCTTTTCCTTTTCCGGTGAAATTGAATTTGTCGAAATGAGAAAGTAAGTATGATTTTGGCTGTTTTTTTTAATGTCGATGAGTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTGGGCATTTTCATTTATTTTATGCTGTGTTCTTATAGTGACAATGAGCGATCTCAACTTGCATTTGTTACCTTCAAGGATTCAAAAGGGGCAGAGACGTCGATTCTACTCTCGGTTGATACAATTCTCTATCTTTTCTTCTTCTATTTTGATTATCCTTCTTGATCTCCAGATCTTCTGAATGATTTTATTTGATTATTTTCCATTCTAATGTGCTTATATTTAAACTTTCATTAGAAATTGATTCCTGAACAGTAGTAAATTTATTTTGTTATGAAAAGTGGTTATACGGGGATGTTACGTTTTGAAAATTAAATAGAACACAGTTTTATTCTTCAGAGAAAGGTGAGATTTAATAAGTTTTTCATACATTTATGTATAACTCTTGATTCATAGATATTATTCTTTCAGTTTCATTCTCAAACATCTGAACAATGGAAAACTTCTTTTTCTGTCCCTCATGTTAAATAATTTCTTTGCTACCACATGTGAAAGAGGCATCTTCCATTCATATCGATTTTCCTTTTTCTACTCCAATATTTACATTAGTCTCTTCTTCAAACCGGAGAGCTAAGAAATTTATGTTATAGGCTTCTTCTTGTTTCATTTGTTATCTTGCCTAATTAAACGGTTTTGCATCTCTAAGGGAGCTACAATTGTCGATCAGCCAGTAAGCATTTCTTCGGCTCCAGATTACAACCTTCCTGCAGTTGATGCCAGTGCCCCTGTAGCTGTACCCGTGTCTACTCCTGTATTTTCTTCAATCTTACCCTCGACAATATATTTTCAATCTTGTTCATAATGTGATTCATAACATGAATGAATAAACATGTTTCACCAGGCTTTAGACAACACAACCTCTACTACTAATTCTACTGCTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTCAGCAGCATGCTAGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCGAAGTCTTTTGACGAAAGGCACCAATTGACTTCAACAGCCTCATCCAAAGTTGCTTCTCTGGACCAAAAAATCGGCCTTAGTGAGAAAATTAGTGTTGGCACTACCGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAGACTAAGGCAGCTGTGAGCAACGCTGGATCAGCTATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTAGCCAGACATTTCAACGAGTTGCAAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGAGGATCAAGGGAAACATGTGGGAAATTCTTCTTAAAGTCATCCTAAGAATTGCTGCGCTCCAATATATCAAAATCTTATATATTTGGCCAAAACAATGTGAGGACCAATTCTCTTAGCTTCCTAATTTTGATCTCAGTTTGATATATTTTGAATGCTTTTTATTTAGTTTTAGTATTAGGAGTATACATACATATACGCTAAATTACATCGATTGTAAGAATAGCATATATATATATATATTCATATATGTATATGAATATATATATATGCTATGTGATACCCGGCTTTCCTTGTTTAGATACTTGGCTTCTACTTGTGCATTTTGGTGTGTTGGTATATTTTTCTACAACCATTTCTATTTGCGAGGTGTAATCAATTTGTTTAGATCTATGTAATTGAACTATTAAATCAGTATATCGTTTTTCTAGAAAAATTGTTTGTTTTTTCTAATTATTATTAATTGCAACTTTATGTCCCTCATTAGATTTCTTTTGTGATGGACTCCAACCACTCTCAAAGAGTTTGTCAAAAAAAATTCACGTACGAGTGGATTTCTTTAATCTAGGTCATGGTTTTTCTCCAATTCCTGTATTGTTTTTGTTTTGTTAAGAACTCGACAATCAAAGTTAAAAAAAAAAAAAAAAATTAAACAATGAATAATGGACATTAAGAT

mRNA sequence

ATTTAAGATAAGTCTAAGTTGATCCGAAATATCAAAAGAAAAAGGAAAGAAATAAAGAAATGGAATGAGTCAGTTTTTTATTTTATTTTGCCATATGTATTACTACGAACCTAAACAACCGCCAAGCCACAACACAACTCTCAGGGCATTCTTCCTTCTTCTTTTCTCCTCTTTCTCTCTCTCTCTCTAAGAATTTGAATTGGCAAATCTCTCAGGTGAATCAAACAGAAGAATCATGGCGACGAGGACGGTGAGAGTTACCAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTCTTTTCCTTTTCCGGTGAAATTGAATTTGTCGAAATGAGAAATGACAATGAGCGATCTCAACTTGCATTTGTTACCTTCAAGGATTCAAAAGGGGCAGAGACGTCGATTCTACTCTCGGGAGCTACAATTGTCGATCAGCCAGTAAGCATTTCTTCGGCTCCAGATTACAACCTTCCTGCAGTTGATGCCAGTGCCCCTGTAGCTGTACCCGTGTCTACTCCTGCTTTAGACAACACAACCTCTACTACTAATTCTACTGCTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTCAGCAGCATGCTAGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCGAAGTCTTTTGACGAAAGGCACCAATTGACTTCAACAGCCTCATCCAAAGTTGCTTCTCTGGACCAAAAAATCGGCCTTAGTGAGAAAATTAGTGTTGGCACTACCGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAGACTAAGGCAGCTGTGAGCAACGCTGGATCAGCTATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTAGCCAGACATTTCAACGAGTTGCAAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGAGGATCAAGGGAAACATGTGGGAAATTCTTCTTAAAGTCATCCTAAGAATTGCTGCGCTCCAATATATCAAAATCTTATATATTTGGCCAAAACAATGTGAGGACCAATTCTCTTAGCTTCCTAATTTTGATCTCAGTTTGATATATTTTGAATGCTTTTTATTTAGTTTTAGTATTAGGAGTATACATACATATACGCTAAATTACATCGATTGTAAGAATAGCATATATATATATATATTCATATATGTATATGAATATATATATATGCTATGTGATACCCGGCTTTCCTTGTTTAGATACTTGGCTTCTACTTGTGCATTTTGGTGTGTTGGTATATTTTTCTACAACCATTTCTATTTGCGAGGTGTAATCAATTTGTTTAGATCTATGTAATTGAACTATTAAATCAGTATATCGTTTTTCTAGAAAAATTGTTTGTTTTTTCTAATTATTATTAATTGCAACTTTATGTCCCTCATTAGATTTCTTTTGTGATGGACTCCAACCACTCTCAAAGAGTTTGTCAAAAAAAATTCACGTACGAGTGGATTTCTTTAATCTAGGTCATGGTTTTTCTCCAATTCCTGTATTGTTTTTGTTTTGTTAAGAACTCGACAATCAAAGTTAAAAAAAAAAAAAAAAATTAAACAATGAATAATGGACATTAAGAT

Coding sequence (CDS)

ATGGCGACGAGGACGGTGAGAGTTACCAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTCTTTTCCTTTTCCGGTGAAATTGAATTTGTCGAAATGAGAAATGACAATGAGCGATCTCAACTTGCATTTGTTACCTTCAAGGATTCAAAAGGGGCAGAGACGTCGATTCTACTCTCGGGAGCTACAATTGTCGATCAGCCAGTAAGCATTTCTTCGGCTCCAGATTACAACCTTCCTGCAGTTGATGCCAGTGCCCCTGTAGCTGTACCCGTGTCTACTCCTGCTTTAGACAACACAACCTCTACTACTAATTCTACTGCTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTCAGCAGCATGCTAGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCGAAGTCTTTTGACGAAAGGCACCAATTGACTTCAACAGCCTCATCCAAAGTTGCTTCTCTGGACCAAAAAATCGGCCTTAGTGAGAAAATTAGTGTTGGCACTACCGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAGACTAAGGCAGCTGTGAGCAACGCTGGATCAGCTATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTAGCCAGACATTTCAACGAGTTGCAAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGAGGATCAAGGGAAACATGTGGGAAATTCTTCTTAA

Protein sequence

MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSGATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS

Homology

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BLAST of CsGy2G027160 vs. NCBI nr
Match: XP_004148092.1 (PREDICTED: uncharacterized protein LOC101220067 [Cucumis sativus] >KGN63397.1 hypothetical protein Csa_2G437070 [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 7.5e-99
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL
Sbjct: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120
           LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV
Sbjct: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180
           VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX
Sbjct: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180

Query: 181 XXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL 240
           XXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL
Sbjct: 181 XXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL 240

Query: 241 AEEDQGKHVGNSS 254
           AEEDQGKHVGNSS
Sbjct: 241 AEEDQGKHVGNSS 253

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BLAST of CsGy2G027160 vs. NCBI nr
Match: XP_023512142.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 211/249 (84.74%), Postives = 220/249 (88.35%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MA RTVRVTNVSL ATEK+LR+FFSFSGEIEFVEMR DNE+ Q+AFVTFKD KGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDAS-APVXXXXXXXXXXXXXXXXXXXXXXXXQKAED 120
           LSGATIVDQP+SI SAPDYNLPAV AS  P              XXXXXXXXX  QKAED
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPATENTGAETXXXXXXXXXAMQKAED 120

Query: 121 VVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXX 180
           VVSSMLAKGF LGKDALN+AKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTT XXXX
Sbjct: 121 VVSSMLAKGFILGKDALNRAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVXXXX 180

Query: 181 XXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKV 240
           XXXXXXXXXXXXXXXAAV+NAGSAIMTNRYV TGASWVSQTFQRVAKAAVDVSQKTKEK+
Sbjct: 181 XXXXXXXXXXXXXXXAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKEKM 240

Query: 241 LAEEDQGKH 249
           LAE+ QGKH
Sbjct: 241 LAEDQQGKH 249

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BLAST of CsGy2G027160 vs. NCBI nr
Match: XP_016902374.1 (PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 2.6e-83
Identity = 202/230 (87.83%), Postives = 203/230 (88.26%), Query Frame = 0


Query: 24  FSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSGATIVDQPVSISSAPDYNLPA 83
           FSFSGEIEFVEMRNDNERSQLAFVTFKD KGAETSILLSGATIVDQPVSISSAPDYNLPA
Sbjct: 62  FSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLSGATIVDQPVSISSAPDYNLPA 121

Query: 84  VDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDVVSSMLAKGFTLGKDALNKAKSFD 143
           VDASAPV                        QK EDVVSSMLAKGFTLGKDALNKAKSFD
Sbjct: 122 VDASAPV-AVPVSTPAIDNTTSTTTTAGSAIQKTEDVVSSMLAKGFTLGKDALNKAKSFD 181

Query: 144 ERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA 203
           ERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA
Sbjct: 182 ERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA 241

Query: 204 IMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 254
           +M NRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS
Sbjct: 242 LMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 290

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BLAST of CsGy2G027160 vs. NCBI nr
Match: XP_023512141.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 2.6e-83
Identity = 218/250 (87.20%), Postives = 227/250 (90.80%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MA RTVRVTNVSL ATEK+LR+FFSFSGEIEFVEMR DNE+ Q+AFVTFKD KGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAP--VXXXXXXXXXXXXXXXXXXXXXXXXQKAE 120
           LSGATIVDQP+SI SAPDYNLPAV AS P         XXXXXXXXXXXXXXXX  QKAE
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATXXXXXXXXXXXXXXXXAMQKAE 120

Query: 121 DVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXX 180
           DVVSSMLAKGF LGKDALN+AKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTT XXX
Sbjct: 121 DVVSSMLAKGFILGKDALNRAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVXXX 180

Query: 181 XXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEK 240
           XXXXXXXXXXXXXXXXAAV+NAGSAIMTNRYV TGASWVSQTFQRVAKAAVDVSQKTKEK
Sbjct: 181 XXXXXXXXXXXXXXXXAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKEK 240

Query: 241 VLAEEDQGKH 249
           +LAE+ QGKH
Sbjct: 241 MLAEDQQGKH 250

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BLAST of CsGy2G027160 vs. NCBI nr
Match: XP_022986589.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 2.9e-82
Identity = 212/252 (84.13%), Postives = 221/252 (87.70%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MA RTVRVTNVSL ATEK+LR+FFSFSGEIEFVEMR DNE+ Q+AFVTFKD KGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAP----VXXXXXXXXXXXXXXXXXXXXXXXXQK 120
           LSGATIVDQP+SI SAPDYNLPAV AS P             XXXXXXXXXXXXXXX QK
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPAAENTGAXXXXXXXXXXXXXXXMQK 120

Query: 121 AEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXX 180
           AEDVVSSMLAKGF LGKDALN+AKSFDERHQLT TASSKVASLDQKIGLSEKISVGTT  
Sbjct: 121 AEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTTVV 180

Query: 181 XXXXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTK 240
            XXXXXXXXXXXXXXX  AAV+NAGSAIMTNRYV TGASWVSQTFQRVAKAAVDVSQKTK
Sbjct: 181 NXXXXXXXXXXXXXXXTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTK 240

Query: 241 EKVLAEEDQGKH 249
           EK+LAE+ QGKH
Sbjct: 241 EKMLAEDQQGKH 252

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BLAST of CsGy2G027160 vs. TAIR10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-57
Identity = 134/258 (51.94%), Postives = 169/258 (65.50%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           M   TV+V+NVSL AT++DL++FFSFSG+I ++E +++ ER++LA+VTFKD +GAET++L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDQPVSISSAPDYNL-PAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAED 120
           LSGATIVD  V +S APDY L P   AS                           +KAED
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALAS----------LEPKDSNKSPKAGDSVLRKAED 120

Query: 121 VVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXX 180
           VVSSMLAKGF LGKDA+ KAKS DE+HQLTSTAS+KVAS D+KIG ++KI+ GT      
Sbjct: 121 VVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEK 180

Query: 181 XXXXXXXXXXXXXXXAA-------VSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVS 240
                          +A       VSNAGSAIM NRYVLTGA+WV+  F +VAKAA +V 
Sbjct: 181 VREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVG 240

Query: 241 QKTKEKV-LAEEDQGKHV 250
           QK KEKV +AEE+  + V
Sbjct: 241 QKAKEKVGMAEEEDKRKV 248

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BLAST of CsGy2G027160 vs. TAIR10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 214.9 bits (546), Expect = 5.6e-56
Identity = 124/246 (50.41%), Postives = 165/246 (67.07%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           M+  TV+V+NVSL ATE+DL++FFSFSG+I ++E +++N+ S+LA+VTFKD +GAET++L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120
           L+G+TIVD  V+++ +PDY LP  DA A +                        +KAEDV
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPP-DALASI----ESLKESNKSSSPTREDVSVFRKAEDV 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180
           VS M++KGF LGKDA+ KAKS DE+HQLTSTAS++V S D++IG +EKI+ GTT      
Sbjct: 121 VSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKV 180

Query: 181 XXXXXXXXXXXXXXAA-------VSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQ 240
                         +A       VSNAGSAIM NRYVLTGA+WV+  F RV+KAA +V Q
Sbjct: 181 KEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQ 240

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BLAST of CsGy2G027160 vs. TAIR10
Match: AT1G67950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-43
Identity = 105/247 (42.51%), Postives = 150/247 (60.73%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63
           +TV+++NVSL  ++KD+++FFSFSG+I++VEMR++ + SQ+A+VTFKDS+GAET++LL+G
Sbjct: 29  KTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTG 88

Query: 64  ATIVDQPVSISSAPDYNLP----AVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAED 123
           A I D  VSI+ A +Y LP    A+D+                            +KAED
Sbjct: 89  AVIADLRVSITPAVNYQLPPEALALDSQ------------------EHSFNGFSVKKAED 148

Query: 124 VVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXX 183
           VV+ M+ +G+ LGKDA+ KAK+FD+RH L S AS+ +ASLD K+GLSEK+S+GTT     
Sbjct: 149 VVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEK 208

Query: 184 XXXXXXXXXXXXXXXAAVS-------NAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVS 240
                          +A++       +A +A+M N YV +GASW S  F  V KA     
Sbjct: 209 LRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA----- 250

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BLAST of CsGy2G027160 vs. TAIR10
Match: AT5G16840.2 (binding partner of acd11 1)

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-41
Identity = 112/264 (42.42%), Postives = 149/264 (56.44%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63
           R+V+V N+S  ATE D+++FFSFSGE+E +++++ NE S  A+VTFK+++GAET++LLSG
Sbjct: 6   RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLSG 65

Query: 64  ATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDVVSS 123
           A+I DQ V I  AP+Y+ PA    AP                         QKAEDVVSS
Sbjct: 66  ASIADQSVIIELAPNYSPPA----AP------------HAETQSSGAESVVQKAEDVVSS 125

Query: 124 MLAKGFTLGKDALNKAKSFDERHQLTSTASS------------------------KVASL 183
           MLAKGF LGKDA+ KAK+FDE+H  TSTA++                           ++
Sbjct: 126 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXAV 185

Query: 184 DQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQ 243
           DQ   ++E+                            VS+AGSA+M NRYVLTG SW + 
Sbjct: 186 DQNFQVTERTK-----------------SVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAG 234

[Close]

BLAST of CsGy2G027160 vs. TAIR10
Match: AT5G32450.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.7e-39
Identity = 118/250 (47.20%), Postives = 167/250 (66.80%), Query Frame = 0


Query: 3   TRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLS 62
           TR+V+V NVS  ATE+++ +FFSFSG+IE +E++ +  +S++AFVTF D K  E ++LLS
Sbjct: 4   TRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLS 63

Query: 63  GATIVDQPVSISSAPDY-------NLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQ 122
           GATIVDQ V+I+ A +Y        +  +D + P+                         
Sbjct: 64  GATIVDQIVTITRAENYVQRRETQEVRMLDNAMPL---GLQESTTQTKTNMDGNSRAYVS 123

Query: 123 KAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTT- 182
           KA+DVV+++LAKG  LG+DA+NKAK+FDE+HQL + AS+KV+S D+++GL+EK+SVG + 
Sbjct: 124 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISA 183

Query: 183 ------XXXXXXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAA 239
                 XXXXXXXXXXXXXXXXXXXX  +++ GSA+ ++RYV  GA+W S  F +VA+  
Sbjct: 184 VXXXXXXXXXXXXXXXXXXXXXXXXXRKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVG 243

[Close]

BLAST of CsGy2G027160 vs. Swiss-Prot
Match: sp|Q9LFD5|BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-39
Identity = 112/264 (42.42%), Postives = 149/264 (56.44%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63
           R+V+V N+S  ATE D+++FFSFSGE+E +++++ NE S  A+VTFK+++GAET++LLSG
Sbjct: 6   RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLSG 65

Query: 64  ATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDVVSS 123
           A+I DQ V I  AP+Y+ PA    AP                         QKAEDVVSS
Sbjct: 66  ASIADQSVIIELAPNYSPPA----AP------------HAETQSSGAESVVQKAEDVVSS 125

Query: 124 MLAKGFTLGKDALNKAKSFDERHQLTSTASS------------------------KVASL 183
           MLAKGF LGKDA+ KAK+FDE+H  TSTA++                           ++
Sbjct: 126 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXAV 185

Query: 184 DQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQ 243
           DQ   ++E+                            VS+AGSA+M NRYVLTG SW + 
Sbjct: 186 DQNFQVTERTK-----------------SVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAG 233

[Close]

BLAST of CsGy2G027160 vs. TrEMBL
Match: tr|A0A0A0LRG1|A0A0A0LRG1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 5.0e-99
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL
Sbjct: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120
           LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV
Sbjct: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180
           VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX
Sbjct: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180

Query: 181 XXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL 240
           XXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL
Sbjct: 181 XXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL 240

Query: 241 AEEDQGKHVGNSS 254
           AEEDQGKHVGNSS
Sbjct: 241 AEEDQGKHVGNSS 253

[Close]

BLAST of CsGy2G027160 vs. TrEMBL
Match: tr|A0A1S4E2B3|A0A1S4E2B3_CUCME (binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498392 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.7e-83
Identity = 202/230 (87.83%), Postives = 203/230 (88.26%), Query Frame = 0


Query: 24  FSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSGATIVDQPVSISSAPDYNLPA 83
           FSFSGEIEFVEMRNDNERSQLAFVTFKD KGAETSILLSGATIVDQPVSISSAPDYNLPA
Sbjct: 62  FSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLSGATIVDQPVSISSAPDYNLPA 121

Query: 84  VDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDVVSSMLAKGFTLGKDALNKAKSFD 143
           VDASAPV                        QK EDVVSSMLAKGFTLGKDALNKAKSFD
Sbjct: 122 VDASAPV-AVPVSTPAIDNTTSTTTTAGSAIQKTEDVVSSMLAKGFTLGKDALNKAKSFD 181

Query: 144 ERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA 203
           ERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA
Sbjct: 182 ERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA 241

Query: 204 IMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 254
           +M NRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS
Sbjct: 242 LMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 290

[Close]

BLAST of CsGy2G027160 vs. TrEMBL
Match: tr|A0A1S3CAU8|A0A1S3CAU8_CUCME (binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498392 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.1e-77
Identity = 191/219 (87.21%), Postives = 192/219 (87.67%), Query Frame = 0


Query: 35  MRNDNERSQLAFVTFKDSKGAETSILLSGATIVDQPVSISSAPDYNLPAVDASAPVXXXX 94
           MRNDNERSQLAFVTFKD KGAETSILLSGATIVDQPVSISSAPDYNLPAVDASAPV    
Sbjct: 1   MRNDNERSQLAFVTFKDPKGAETSILLSGATIVDQPVSISSAPDYNLPAVDASAPV-AVP 60

Query: 95  XXXXXXXXXXXXXXXXXXXXQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASS 154
                               QK EDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASS
Sbjct: 61  VSTPAIDNTTSTTTTAGSAIQKTEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASS 120

Query: 155 KVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGA 214
           KVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSA+M NRYVLTGA
Sbjct: 121 KVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSALMANRYVLTGA 180

Query: 215 SWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 254
           SWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS
Sbjct: 181 SWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 218

[Close]

BLAST of CsGy2G027160 vs. TrEMBL
Match: tr|B9S228|B9S228_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1326600 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 151/254 (59.45%), Postives = 179/254 (70.47%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MA  TV+V+NVSL ATE+D+++FFSFSG+I++VE+  DNERSQ+A+VTFKD +GAET++L
Sbjct: 1   MAITTVKVSNVSLGATEQDIKEFFSFSGDIDYVELLGDNERSQIAYVTFKDQQGAETAVL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120
           LSGATIVDQ V+I  APDY LPA  AS P                         QKAED+
Sbjct: 61  LSGATIVDQSVTIELAPDYKLPAA-ASVPT---------TATESSTASGAESAFQKAEDI 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180
           VSSMLAKGF LGKDA+NKAK+FDE+HQ TSTA+SKVASLD+KIGL+EKIS GTT      
Sbjct: 121 VSSMLAKGFILGKDAVNKAKAFDEKHQFTSTATSKVASLDEKIGLTEKISAGTTLVNDKV 180

Query: 181 XXXXXXXXXXXXXXAA-------VSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQ 240
                         +A       VSNAGSAIM NRYVLTGASWV+  F RVAKAA +V Q
Sbjct: 181 REVDEKFRVSETTKSAFAAAEQTVSNAGSAIMKNRYVLTGASWVTGAFNRVAKAAGEVGQ 240

Query: 241 KTKEKVLAEEDQGK 248
           KTKEKVLAEE+Q +
Sbjct: 241 KTKEKVLAEEEQNQ 244

[Close]

BLAST of CsGy2G027160 vs. TrEMBL
Match: tr|D7T7N4|D7T7N4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0039g01860 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 151/257 (58.75%), Postives = 180/257 (70.04%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60
           MA  TV+V+NVSL A+E+D+++FFSFSGEIE+VEM+++NERSQ+A+VTFKD++GAET++L
Sbjct: 1   MAISTVKVSNVSLGASEQDIKEFFSFSGEIEYVEMQSENERSQVAYVTFKDTQGAETAVL 60

Query: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVXXXXXXXXXXXXXXXXXXXXXXXXQKAEDV 120
           LSGATIVD  V I+ APDY LPA  +  P                         QKAEDV
Sbjct: 61  LSGATIVDMSVIIAPAPDYKLPAAASVQP----------RATENTNVGAGESPLQKAEDV 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXX 180
           VS MLAKGF LGKDALNKAKSFDERHQ TSTAS+KV SLDQKIGL++KIS+GTT      
Sbjct: 121 VSGMLAKGFILGKDALNKAKSFDERHQFTSTASAKVVSLDQKIGLTDKISMGTTLVKDKV 180

Query: 181 XXXXXXXXXXXXXXAA-------VSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQ 240
                          A       VSNAGSAIM NRYVLTGASWV+  F +VAKAA +V Q
Sbjct: 181 GEMDQKFQVSEKTKTAFAAAEQTVSNAGSAIMKNRYVLTGASWVTGAFNKVAKAAGEVGQ 240

Query: 241 KTKEKVLAEEDQGKHVG 251
           K KEKV AEE+QG++VG
Sbjct: 241 KAKEKV-AEEEQGRNVG 246

The following BLAST results are available for this feature:

BLAST of CsGy2G027160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148092.1	7.5e-99	100.00	PREDICTED: uncharacterized protein LOC101220067 [Cucumis sativus] >KGN63397.1 hy...	[more]
XP_023512142.1	1.5e-83	84.74	binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_016902374.1	2.6e-83	87.83	PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]	[more]
XP_023512141.1	2.6e-83	87.20	binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022986589.1	2.9e-82	84.13	binding partner of ACD11 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CsGy2G027160 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	5.1e-57	51.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	5.6e-56	50.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	3.2e-43	42.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.0e-41	42.42	binding partner of acd11 1	[more]
AT5G32450.1	3.7e-39	47.20	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CsGy2G027160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFD5\|BPA1_ARATH	3.5e-39	42.42	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]

BLAST of CsGy2G027160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRG1\|A0A0A0LRG1_CUCSA	5.0e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1	[more]
tr\|A0A1S4E2B3\|A0A1S4E2B3_CUCME	1.7e-83	87.83	binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034983...	[more]
tr\|A0A1S3CAU8\|A0A1S3CAU8_CUCME	3.1e-77	87.21	binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034983...	[more]
tr\|B9S228\|B9S228_RICCO	7.2e-66	59.45	Nucleic acid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_13266...	[more]
tr\|D7T7N4\|D7T7N4_VITVI	3.6e-65	58.75	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0039g01860 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G027160.1	CsGy2G027160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 e-value: 5.7E-10 score: 49.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 6..66 e-value: 9.0E-9 score: 34.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..78 score: 12.748
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 1..80 e-value: 5.1E-12 score: 47.8
None	No IPR available	PANTHER	PTHR44136:SF6	BINDING PARTNER OF ACD11 1	coord: 2..249
None	No IPR available	PANTHER	PTHR44136	FAMILY NOT NAMED	coord: 2..249
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 4..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G027160	Csa2G437070	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G027160	MELO3C021893	Melon (DHL92) v3.5.1	cgybmeB080
CsGy2G027160	ClCG09G016890	Watermelon (Charleston Gray)	cgybwcgB090
CsGy2G027160	CSPI02G27720	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G027160	CmaCh20G009250	Cucurbita maxima (Rimu)	cgybcmaB220
CsGy2G027160	CmaCh02G004630	Cucurbita maxima (Rimu)	cgybcmaB231
CsGy2G027160	CmoCh20G009310	Cucurbita moschata (Rifu)	cgybcmoB211
CsGy2G027160	CmoCh02G004700	Cucurbita moschata (Rifu)	cgybcmoB222
CsGy2G027160	Lsi10G002580	Bottle gourd (USVL1VR-Ls)	cgyblsiB087
CsGy2G027160	Cp4.1LG05g12090	Cucurbita pepo (Zucchini)	cgybcpeB242
CsGy2G027160	Cp4.1LG16g01810	Cucurbita pepo (Zucchini)	cgybcpeB196
CsGy2G027160	MELO3C021893.2	Melon (DHL92) v3.6.1	cgybmedB076
CsGy2G027160	CsaV3_2G036380	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G027160	Cla97C09G178450	Watermelon (97103) v2	cgybwmbB161
CsGy2G027160	Bhi10G001310	Wax gourd	cgybwgoB168
CsGy2G027160	Carg27475	Silver-seed gourd	carcgybB0550
CsGy2G027160	Carg24039	Silver-seed gourd	carcgybB1036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G027160	Watermelon (97103) v1	cgybwmB100