CmaCh02G004630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G004630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nucleic acid binding protein, putative
Location	Cma_Chr02 : 2427854 .. 2429986 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTTTTGCCATCTGTATTATTTGCGAACCTAAACAACCGCCAAGCCACAACGCACCTCTCAAGGTCATTCTTCCTCTGTCTCTCTCTCTCTCTCTCTCTCGAAGAACTTGGATTTGAAACTTCTCCGGTGGATCAGACGGAGCAGCATGGCGGTTGGTGTTCAATTTTTCCTTCTTTTTCTGTTCATTTTGTTCCTAATCTTTTTGATTTCTGGCGATGTTATTACCTCAAATTTCATTTTGTTGTGAGGCGTGATTTTTTCTTCTTATTAACTACTTAATATAGGTGAAACAGCATGTTTCATTGTTTTTTCCTCCCGTAATTTTGATGAACAAATGCGTGACTCGTACTCAGGAGATGGAGAATGCGTACTTCCGTTGTAATTATGGCTGTATTGGAATTTAATGTTTCGAACAAGAAATAAGGAAATTATTGAAAGCACCTAAAACGTCTAAATTCGTCTTTGATTTTCCAGAAACTGACTTGATTTAGGTTGTTTTTTTGTTTAATCGTTACAGTCGCAGGTGAGAACGGTGAGAGTTACCAATGTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGTAAGTGTTATTTACTACTGTCTCGAAATTGTATTTTAGTTCGTTAGGTATATGGTGATTAGCAGTAGGATTGTTACTTTTTTCTTCTTGATCAACTGTTAGTTCGTATGCGTTTTCATTTACTTCATTTTGTTTTCTTGCAGGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCAGAAAGGAGCCGAGACATCGATTCTACTCTCGGTTGATACAATTCTCTATTCTTCCCTTTCTTCATTTCAATTGTCCGTAAACTTAAGATATTCTGAATTAGAAACTGTTTACTTAAGCTTCCATTAGAAACTGTTTCAGGAATGTAGAACCTCTCTTATGTTATGAAATTGGCTCTAAGGTTTGAAAATTACTTAGAACAGAGTTTCATTCTTCAGATAGAAGAGGTTAAACAAAGTTCTCATCCATTTGTTTCGAATGTCTTCAATATGATTGCCGTGATGTGTTCAAAATGCATAGTTAACTTGATTTCTATGTCTCATTACCAAGTGATTTTTTCTTGTTTCATCTGTTTTCTTACCTTGATTAAACTGTCTTGCGTTTCTCAGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTACTGCTCCAGATTACAATCTTCCTGCTGTACCTGCCAGTGCCCCTCTACCAGTGTCTTCTCCAGTATTTTCTTCGATCTTAATCCTACAGTAATTTTCAATCCTGTCTTTCCAATTTCTGACATGAATGAACAAACATGTTTCACCAGTCTGCAGAGAACGCAGGCTCTGGTACTGCTGGATCTGCAATGCAAAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCTAAAGGCTTCACTTTGGGCAAAGATACCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCGAAAGTCCTTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAGATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCTGCGGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACCCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCTAAACAAGAGGGAAGATCTTAATTCATCCAAGAATCGCTGCAAGTCCAAACTTGTGTAGCCCTGATCATACCCCAACATATATATCACATGTATTTGGCCAAAACAATGTGAGGAGTGAGGACCTATTCTTCTTAGCTTGCTATTTTCATCTCGGTTGATTGACATATTTTCAATGCCTTGTTTTAGTTTTTTGTATCAGGGAGTACATAAATAAGCTACATGCTTATGTTGTAATTCAACCGTAAGAAAAACATATATGCTATGTGATTAAGTGTCCAGAAATGATCTTTATAAACATTATTTGCATA

mRNA sequence

CTTTCTTTTGCCATCTGTATTATTTGCGAACCTAAACAACCGCCAAGCCACAACGCACCTCTCAAGGTCATTCTTCCTCTGTCTCTCTCTCTCTCTCTCTCTCGAAGAACTTGGATTTGAAACTTCTCCGGTGGATCAGACGGAGCAGCATGGCGTCGCAGGTGAGAACGGTGAGAGTTACCAATGTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCAGAAAGGAGCCGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTACTGCTCCAGATTACAATCTTCCTGCTGTACCTGCCAGTGCCCCTCTACCAGTGTCTTCTCCATCTGCAGAGAACGCAGGCTCTGGTACTGCTGGATCTGCAATGCAAAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCTAAAGGCTTCACTTTGGGCAAAGATACCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCGAAAGTCCTTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAGATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCTGCGGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACCCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCTAAACAAGAGGGAAGATCTTAATTCATCCAAGAATCGCTGCAAGTCCAAACTTGTGTAGCCCTGATCATACCCCAACATATATATCACATGTATTTGGCCAAAACAATGTGAGGAGTGAGGACCTATTCTTCTTAGCTTGCTATTTTCATCTCGGTTGATTGACATATTTTCAATGCCTTGTTTTAGTTTTTTGTATCAGGGAGTACATAAATAAGCTACATGCTTATGTTGTAATTCAACCGTAAGAAAAACATATATGCTATGTGATTAAGTGTCCAGAAATGATCTTTATAAACATTATTTGCATA

Coding sequence (CDS)

ATGGCGTCGCAGGTGAGAACGGTGAGAGTTACCAATGTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCAGAAAGGAGCCGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTACTGCTCCAGATTACAATCTTCCTGCTGTACCTGCCAGTGCCCCTCTACCAGTGTCTTCTCCATCTGCAGAGAACGCAGGCTCTGGTACTGCTGGATCTGCAATGCAAAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCTAAAGGCTTCACTTTGGGCAAAGATACCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCGAAAGTCCTTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAGATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCTGCGGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACCCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCTAAACAAGAGGGAAGATCTTAA

Protein sequence

MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLAEDQAKQEGRS

Homology

[Close]

BLAST of CmaCh02G004630 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-59
Identity = 138/250 (55.20%), Postives = 184/250 (73.60%), Query Frame = 1


Query: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60
           MASQVR+V+V N+S  A+E D+++FFSFSGE+E ++++  NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETA 60

Query: 61  ILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSS 120
           +LLSGA+I DQ V I  AP+Y+ PA          +P AE   SG A S +QKAEDVVSS
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQKAEDVVSS 120

Query: 121 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 180
           MLAKGF LGKD + +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++VNEK+K +
Sbjct: 121 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 180

Query: 181 DEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTK 240
           D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA EV  KTK
Sbjct: 181 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 236

Query: 241 EKVLAEDQAK 244
           EKV AE  ++
Sbjct: 241 EKVEAEQPSQ 236

[Close]

BLAST of CmaCh02G004630 vs. Swiss-Prot
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 1


Query: 8   VRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGAT 67
           V VTN+S   +EK + DFFSF G++  +   K  E +Q A + F+     +T++LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAED---VVSSMLAK 127
           +    + I T+ D              ++ + +  G+G   +A Q+ +    ++S +L++
Sbjct: 65  LGQNKIQI-TSEDGG------------AASTTDQGGAGGDQAARQEDKPRSAIISELLSR 124

Query: 128 GFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTV-VNEKVKEMDEK 187
           G+ L   TL ++   DQ + ++S     + S      LS   SV     V EK  E+D K
Sbjct: 125 GYHLSDVTLEKSIQLDQSYGVSSKFKGILES-----ALSGVRSVNERYHVTEKANEVDNK 171

Query: 188 FQVSEK 190
           F +S+K
Sbjct: 185 FAISDK 171

[Close]

BLAST of CmaCh02G004630 vs. TrEMBL
Match: A0A0A0LRG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.2e-99
Identity = 210/249 (84.34%), Postives = 227/249 (91.16%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           RTVRVTNVSLSA+EKDLRDFFSFSGEIEFVEMR DNERSQ+AFVTFKD KGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63

Query: 66  ATIVDQPVSIATAPDYNLPAVPASAPL--PVSSPSAENAGS---GTAGSAMQKAEDVVSS 125
           ATIVDQPVSI++APDYNLPAV ASAP+  PVS+P+ +N  S    TAGSAMQKAEDVVSS
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDVVSS 123

Query: 126 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 185
           MLAKGFTLGKD LN+AKSFD++HQLTSTASSKV SLDQKIGLSEKISVGTTVVNEKV+EM
Sbjct: 124 MLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREM 183

Query: 186 DEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLA-E 245
           DEKFQVSEKTKAAV+NAG+A+M NRYV TGASWV+QTFQRVAKAAV+VS KTKEKVLA E
Sbjct: 184 DEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEE 243

Query: 246 DQAKQEGRS 249
           DQ K  G S
Sbjct: 244 DQGKHVGNS 252

[Close]

BLAST of CmaCh02G004630 vs. TrEMBL
Match: A0A059DKL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02974 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.8e-77
Identity = 160/246 (65.04%), Postives = 203/246 (82.52%), Query Frame = 1


Query: 3   SQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSIL 62
           S VRTV+V+N+SLSASE D+++FFSFSGEIE+VEM+  NERSQ+A+VTFKD +GAET++L
Sbjct: 2   SSVRTVKVSNLSLSASELDIKEFFSFSGEIEYVEMQSSNERSQVAYVTFKDPQGAETAVL 61

Query: 63  LSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSML 122
           LSGATIVDQ V+IA APDY LPA      +P+   + EN  +G +G+A+QKAEDVV+SML
Sbjct: 62  LSGATIVDQSVTIAPAPDYKLPA-----SIPILPAATENMSTGESGTAVQKAEDVVTSML 121

Query: 123 AKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDE 182
           AKGF LGKD +N+A++FD+KHQ TSTA++KV S+DQKIGLSEKI+ GTT+VN+KV+E+D+
Sbjct: 122 AKGFILGKDAVNKARTFDEKHQFTSTAAAKVASIDQKIGLSEKITAGTTIVNDKVREVDQ 181

Query: 183 KFQVSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEK 242
           KFQVSEKTK+A       V++AG+A+M NRYV TG SWVT  F RV KAA +V  KTKEK
Sbjct: 182 KFQVSEKTKSAFAAAEQTVSSAGSAIMKNRYVLTGTSWVTGAFSRVTKAAGDVGQKTKEK 241

[Close]

BLAST of CmaCh02G004630 vs. TrEMBL
Match: K4BJC8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.9e-75
Identity = 161/245 (65.71%), Postives = 198/245 (80.82%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           RTV+V+NVSLSASE+D+++FFSFSG+IE+VEM  +NERSQIA+VTFKD +GAET++LLSG
Sbjct: 4   RTVKVSNVSLSASEQDIKEFFSFSGDIEYVEMMSENERSQIAYVTFKDLQGAETAVLLSG 63

Query: 66  ATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKG 125
           ATI+DQ V+I   PDY LP    +A +P+ +  + NA  G  GSA+QKAEDVVSSMLAKG
Sbjct: 64  ATIIDQSVTIVPEPDYELPP---TALVPIKATESANAAGG--GSAIQKAEDVVSSMLAKG 123

Query: 126 FTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQ 185
           F LGKD +N+AK+FD+KHQ TSTAS+KV SLDQKIGLSEKI++G T+VN+KVKEMD+KF 
Sbjct: 124 FILGKDAVNKAKTFDEKHQFTSTASAKVASLDQKIGLSEKINLGATIVNDKVKEMDQKFH 183

Query: 186 VSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLA 244
           VSEKTK+A       V+ AG+A+M NRYV TGASWVT  F +V KAA EV  KTKEK+  
Sbjct: 184 VSEKTKSALAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNKVTKAAGEVGQKTKEKMAE 243

[Close]

BLAST of CmaCh02G004630 vs. TrEMBL
Match: M0ZU86_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003159 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.7e-75
Identity = 160/245 (65.31%), Postives = 198/245 (80.82%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           RTV+V+NVSL ASE+D+++FFSFSG+IE+VEM  +NERSQIA+VTFKD +GAET++LLSG
Sbjct: 4   RTVKVSNVSLGASEQDIKEFFSFSGDIEYVEMMSENERSQIAYVTFKDPQGAETAVLLSG 63

Query: 66  ATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKG 125
           ATI+DQ V+I   PDY LP    +A +P+ +  + NA  G  GSA+QKAEDVVSSMLAKG
Sbjct: 64  ATIIDQSVTIVPEPDYELPP---TALVPIKATESANAAGG--GSAIQKAEDVVSSMLAKG 123

Query: 126 FTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQ 185
           F LGKD +N+AK+FD+KHQ TSTAS+KV SLDQKIGLSEKI++G T+VN+KVKEMD+KF 
Sbjct: 124 FILGKDAVNKAKTFDEKHQFTSTASAKVASLDQKIGLSEKINLGATIVNDKVKEMDQKFH 183

Query: 186 VSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLA 244
           VSEKTK+A       V+ AG+A+M NRYV TGASWVT  F +V KAA EV  KTKEK+  
Sbjct: 184 VSEKTKSALAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNKVTKAAGEVGQKTKEKMAE 243

[Close]

BLAST of CmaCh02G004630 vs. TrEMBL
Match: A0A0V0I3M0_SOLCH (Putative RNA-binding family protein-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.7e-75
Identity = 160/245 (65.31%), Postives = 198/245 (80.82%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           RTV+V+NVSL ASE+D+++FFSFSG+IE+VEM  +NERSQIA+VTFKD +GAET++LLSG
Sbjct: 4   RTVKVSNVSLGASEQDIKEFFSFSGDIEYVEMMSENERSQIAYVTFKDPQGAETAVLLSG 63

Query: 66  ATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKG 125
           ATI+DQ V+I   PDY LP    +A +P+ +  + NA  G  GSA+QKAEDVVSSMLAKG
Sbjct: 64  ATIIDQSVTIVPEPDYELPP---TALVPIKATESANAAGG--GSAIQKAEDVVSSMLAKG 123

Query: 126 FTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQ 185
           F LGKD +N+AK+FD+KHQ TSTAS+KV SLDQKIGLSEKI++G T+VN+KVKEMD+KF 
Sbjct: 124 FILGKDAVNKAKTFDEKHQFTSTASAKVASLDQKIGLSEKINLGATIVNDKVKEMDQKFH 183

Query: 186 VSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLA 244
           VSEKTK+A       V+ AG+A+M NRYV TGASWVT  F +V KAA EV  KTKEK+  
Sbjct: 184 VSEKTKSALAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNKVTKAAGEVGQKTKEKMAE 243

[Close]

BLAST of CmaCh02G004630 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-65
Identity = 140/247 (56.68%), Postives = 189/247 (76.52%), Query Frame = 1


Query: 7   TVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGA 66
           TV+V+NVSL A+++DL++FFSFSG+I ++E + + ER+++A+VTFKD +GAET++LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKGF 126
           TIVD  V ++ APDY L     ++  P  S  +  AG     S ++KAEDVVSSMLAKGF
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGD----SVLRKAEDVVSSMLAKGF 124

Query: 127 TLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQV 186
            LGKD + +AKS D+KHQLTSTAS+KV S D+KIG ++KI+ GT VV EKV+E+D+K+QV
Sbjct: 125 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 184

Query: 187 SEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKV-LA 246
           SEKTK+A       V+NAG+A+M NRYV TGA+WVT  F +VAKAA EV  K KEKV +A
Sbjct: 185 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 244

[Close]

BLAST of CmaCh02G004630 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-64
Identity = 133/247 (53.85%), Postives = 190/247 (76.92%), Query Frame = 1


Query: 7   TVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGA 66
           TV+V+NVSL A+E+DL++FFSFSG+I ++E + +N+ S++A+VTFKD +GAET++LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKGF 126
           TIVD  V++  +PDY LP    ++   +   +  ++ +    S  +KAEDVVS M++KGF
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 124

Query: 127 TLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQV 186
            LGKD + +AKS D+KHQLTSTAS++V S D++IG +EKI+ GTTVV+EKVKE+D+KFQV
Sbjct: 125 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQV 184

Query: 187 SEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKV-LA 246
           +EKTK+A       V+NAG+A+M NRYV TGA+WVT  F RV+KAA EV  K KEKV LA
Sbjct: 185 TEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKVGLA 244

[Close]

BLAST of CmaCh02G004630 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-62
Identity = 138/250 (55.20%), Postives = 184/250 (73.60%), Query Frame = 1


Query: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60
           MASQVR+V+V N+S  A+E D+++FFSFSGE+E ++++  NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSS 120
           +LLSGA+I DQ V I  AP+Y+ PA          +P AE   SG A S +QKAEDVVSS
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQKAEDVVSS 120

Query: 121 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 180
           MLAKGF LGKD + +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++VNEK+K +
Sbjct: 121 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 180

Query: 181 DEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTK 240
           D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA EV  KTK
Sbjct: 181 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 237

Query: 241 EKVLAEDQAK 244
           EKV AE  ++
Sbjct: 241 EKVEAEQPSQ 237

[Close]

BLAST of CmaCh02G004630 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 207.6 bits (527), Expect = 8.8e-54
Identity = 117/232 (50.43%), Postives = 169/232 (72.84%), Query Frame = 1


Query: 3   SQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSIL 62
           S V+TV+++NVSL  S+KD+++FFSFSG+I++VEMR + + SQ+A+VTFKD +GAET++L
Sbjct: 26  SGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAML 85

Query: 63  LSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSML 122
           L+GA I D  VSI  A +Y LP      P  ++  S E++ +G +   ++KAEDVV+ M+
Sbjct: 86  LTGAVIADLRVSITPAVNYQLP------PEALALDSQEHSFNGFS---VKKAEDVVNIMV 145

Query: 123 AKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDE 182
            +G+ LGKD + +AK+FD +H L S AS+ + SLD K+GLSEK+S+GTTVVNEK++++DE
Sbjct: 146 GRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDE 205

Query: 183 KFQVSEKTKAAVN-------NAGTALMANRYVSTGASWVTQTFQRVAKAAVE 228
           ++QV E TK+A+        +A TALMAN YVS+GASW +  F  V KA  E
Sbjct: 206 RYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKAVKE 248

[Close]

BLAST of CmaCh02G004630 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-48
Identity = 111/246 (45.12%), Postives = 170/246 (69.11%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           R+V+V NVS  A+E+++ +FFSFSG+IE +E++K+  +S+IAFVTF D K  E ++LLSG
Sbjct: 5   RSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSG 64

Query: 66  ATIVDQPVSIATAPDY-------NLPAVPASAPLPVSSPSAENAGS--GTAGSAMQKAED 125
           ATIVDQ V+I  A +Y        +  +  + PL +   + +   +  G + + + KA+D
Sbjct: 65  ATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQD 124

Query: 126 VVSSMLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEK 185
           VV+++LAKG  LG+D +N+AK+FD+KHQL + AS+KV S D+++GL+EK+SVG + VNEK
Sbjct: 125 VVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVNEK 184

Query: 186 VKEMDEKFQVSEKTKAAV-------NNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 236
           VK +D+K QVS+KT AA+       N+ G+A+ ++RYV+ GA+W +  F +VA+      
Sbjct: 185 VKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVAG 244

[Close]

BLAST of CmaCh02G004630 vs. NCBI nr
Match: gi|449460718|ref|XP_004148092.1| (PREDICTED: uncharacterized protein LOC101220067 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.7e-99
Identity = 210/249 (84.34%), Postives = 227/249 (91.16%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           RTVRVTNVSLSA+EKDLRDFFSFSGEIEFVEMR DNERSQ+AFVTFKD KGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63

Query: 66  ATIVDQPVSIATAPDYNLPAVPASAPL--PVSSPSAENAGS---GTAGSAMQKAEDVVSS 125
           ATIVDQPVSI++APDYNLPAV ASAP+  PVS+P+ +N  S    TAGSAMQKAEDVVSS
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDVVSS 123

Query: 126 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 185
           MLAKGFTLGKD LN+AKSFD++HQLTSTASSKV SLDQKIGLSEKISVGTTVVNEKV+EM
Sbjct: 124 MLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREM 183

Query: 186 DEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLA-E 245
           DEKFQVSEKTKAAV+NAG+A+M NRYV TGASWV+QTFQRVAKAAV+VS KTKEKVLA E
Sbjct: 184 DEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEE 243

Query: 246 DQAKQEGRS 249
           DQ K  G S
Sbjct: 244 DQGKHVGNS 252

[Close]

BLAST of CmaCh02G004630 vs. NCBI nr
Match: gi|659118591|ref|XP_008459199.1| (PREDICTED: LOW QUALITY PROTEIN: protein vip1-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 1.9e-98
Identity = 209/248 (84.27%), Postives = 226/248 (91.13%), Query Frame = 1


Query: 6   RTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSG 65
           RTVRVTNVSLSA+EKDLRDFF FSGEIEFVEMR DNERSQ+AFVTFKD KGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFXFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLSG 63

Query: 66  ATIVDQPVSIATAPDYNLPAVPASAPL--PVSSPSAENAGSGT--AGSAMQKAEDVVSSM 125
           ATIVDQPVSI++APDYNLPAV ASAP+  PVS+P+ +N  S T  AGSA+QK EDVVSSM
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPAIDNTTSTTTTAGSAIQKTEDVVSSM 123

Query: 126 LAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMD 185
           LAKGFTLGKD LN+AKSFD++HQLTSTASSKV SLDQKIGLSEKISVGTTVVNEKV+EMD
Sbjct: 124 LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMD 183

Query: 186 EKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLA-ED 245
           EKFQVSEKTKAAV+NAG+ALMANRYV TGASWV+QTFQRVAKAAV+VS KTKEKVLA ED
Sbjct: 184 EKFQVSEKTKAAVSNAGSALMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEED 243

Query: 246 QAKQEGRS 249
           Q K  G S
Sbjct: 244 QGKHVGNS 251

[Close]

BLAST of CmaCh02G004630 vs. NCBI nr
Match: gi|702251623|ref|XP_010063354.1| (PREDICTED: uncharacterized protein LOC104450475 [Eucalyptus grandis])

HSP 1 Score: 296.6 bits (758), Expect = 4.1e-77
Identity = 160/246 (65.04%), Postives = 203/246 (82.52%), Query Frame = 1


Query: 3   SQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSIL 62
           S VRTV+V+N+SLSASE D+++FFSFSGEIE+VEM+  NERSQ+A+VTFKD +GAET++L
Sbjct: 2   SSVRTVKVSNLSLSASELDIKEFFSFSGEIEYVEMQSSNERSQVAYVTFKDPQGAETAVL 61

Query: 63  LSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSML 122
           LSGATIVDQ V+IA APDY LPA      +P+   + EN  +G +G+A+QKAEDVV+SML
Sbjct: 62  LSGATIVDQSVTIAPAPDYKLPA-----SIPILPAATENMSTGESGTAVQKAEDVVTSML 121

Query: 123 AKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDE 182
           AKGF LGKD +N+A++FD+KHQ TSTA++KV S+DQKIGLSEKI+ GTT+VN+KV+E+D+
Sbjct: 122 AKGFILGKDAVNKARTFDEKHQFTSTAAAKVASIDQKIGLSEKITAGTTIVNDKVREVDQ 181

Query: 183 KFQVSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEK 242
           KFQVSEKTK+A       V++AG+A+M NRYV TG SWVT  F RV KAA +V  KTKEK
Sbjct: 182 KFQVSEKTKSAFAAAEQTVSSAGSAIMKNRYVLTGTSWVTGAFSRVTKAAGDVGQKTKEK 241

[Close]

BLAST of CmaCh02G004630 vs. NCBI nr
Match: gi|698541575|ref|XP_009766128.1| (PREDICTED: uncharacterized protein LOC104217549 [Nicotiana sylvestris])

HSP 1 Score: 292.0 bits (746), Expect = 1.0e-75
Identity = 162/246 (65.85%), Postives = 200/246 (81.30%), Query Frame = 1


Query: 5   VRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLS 64
           VRTV+V+NVSL ASE+D+++FFSFSG+IE+VEM  +NERSQIA+VTFKD +GAET++LLS
Sbjct: 3   VRTVKVSNVSLGASEQDIKEFFSFSGDIEYVEMISENERSQIAYVTFKDPQGAETAVLLS 62

Query: 65  GATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAK 124
           GATIVDQ V +A  PDY LP    +AP+P+ +    NA  G  GSA+QKAEDVVSSMLAK
Sbjct: 63  GATIVDQSVIVALEPDYELPP---TAPVPIKATERANAAGG--GSAIQKAEDVVSSMLAK 122

Query: 125 GFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKF 184
           GF LGKD +N+AK+FD+KHQL STAS+KV SLDQKIGLSEKI++GTT+VN+KVKEMD+KF
Sbjct: 123 GFILGKDAVNKAKTFDEKHQLISTASAKVASLDQKIGLSEKINMGTTIVNDKVKEMDQKF 182

Query: 185 QVSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVL 244
           QV+EKTK+A       V+ AG+A+M NRYV TGASWVT  F +V KAA EV  KTKEK+ 
Sbjct: 183 QVTEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNKVTKAAGEVGQKTKEKMA 242

[Close]

BLAST of CmaCh02G004630 vs. NCBI nr
Match: gi|697151501|ref|XP_009629975.1| (PREDICTED: uncharacterized protein LOC104120029 [Nicotiana tomentosiformis])

HSP 1 Score: 292.0 bits (746), Expect = 1.0e-75
Identity = 161/246 (65.45%), Postives = 201/246 (81.71%), Query Frame = 1


Query: 5   VRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLS 64
           VRTV+V+NVSL ASE+D+++FFSFSG+IE+VEM  +NERSQIA+VTFKD +GAET++LLS
Sbjct: 3   VRTVKVSNVSLGASEQDIKEFFSFSGDIEYVEMISENERSQIAYVTFKDPQGAETAVLLS 62

Query: 65  GATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAK 124
           GATIVDQ V++A  PDY LP    +AP+P+ +  + NA  G  GSA+QKAEDVVSSMLAK
Sbjct: 63  GATIVDQSVTVALEPDYELPP---TAPVPIKATGSGNAAGG--GSAIQKAEDVVSSMLAK 122

Query: 125 GFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKF 184
           GF LGKD +N+AK+FD+KHQ  STAS+KV SLDQKIGLSEKI++GTT+VN+KVKEMD+KF
Sbjct: 123 GFILGKDAVNKAKTFDEKHQFISTASAKVASLDQKIGLSEKINMGTTIVNDKVKEMDQKF 182

Query: 185 QVSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVL 244
           QV+EKTK+A       V+ AG+A+M NRYV TGASWVT  F +V KAA EV  KTKEK+ 
Sbjct: 183 QVTEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNKVTKAAGEVGQKTKEKMA 242

The following BLAST results are available for this feature:

BLAST of CmaCh02G004630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	1.0e-59	55.20	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]
VIPI_SCHPO	2.2e-06	27.96	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1...	[more]

BLAST of CmaCh02G004630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRG1_CUCSA	1.2e-99	84.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437070 PE=4 SV=1	[more]
A0A059DKL2_EUCGR	2.8e-77	65.04	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02974 PE=4 SV=1	[more]
K4BJC8_SOLLC	5.9e-75	65.71	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M0ZU86_SOLTU	7.7e-75	65.31	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003159 PE=4 SV=1	[more]
A0A0V0I3M0_SOLCH	7.7e-75	65.31	Putative RNA-binding family protein-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmaCh02G004630 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	2.2e-65	56.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	5.5e-64	53.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	2.3e-62	55.20	binding partner of acd11 1	[more]
AT1G67950.3	8.8e-54	50.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G32450.1	1.9e-48	45.12	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh02G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460718\|ref\|XP_004148092.1\|	1.7e-99	84.34	PREDICTED: uncharacterized protein LOC101220067 [Cucumis sativus]	[more]
gi\|659118591\|ref\|XP_008459199.1\|	1.9e-98	84.27	PREDICTED: LOW QUALITY PROTEIN: protein vip1-like [Cucumis melo]	[more]
gi\|702251623\|ref\|XP_010063354.1\|	4.1e-77	65.04	PREDICTED: uncharacterized protein LOC104450475 [Eucalyptus grandis]	[more]
gi\|698541575\|ref\|XP_009766128.1\|	1.0e-75	65.85	PREDICTED: uncharacterized protein LOC104217549 [Nicotiana sylvestris]	[more]
gi\|697151501\|ref\|XP_009629975.1\|	1.0e-75	65.45	PREDICTED: uncharacterized protein LOC104120029 [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004630.1	CmaCh02G004630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..68 score: 2.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 score: 4.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 6..80 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..78 score: 3.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 4..80 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G004630	Cucsa.318780	Cucumber (Gy14) v1	cgycmaB0882
CmaCh02G004630	Cla012993	Watermelon (97103) v1	cmawmB549
CmaCh02G004630	Csa2G437070	Cucumber (Chinese Long) v2	cmacuB590
CmaCh02G004630	ClCG09G016890	Watermelon (Charleston Gray)	cmawcgB510
CmaCh02G004630	CSPI02G27720	Wild cucumber (PI 183967)	cmacpiB595
CmaCh02G004630	CmoCh02G004700	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G004630	CmoCh20G009310	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G004630	Lsi10G002580	Bottle gourd (USVL1VR-Ls)	cmalsiB548
CmaCh02G004630	Cp4.1LG16g01810	Cucurbita pepo (Zucchini)	cmacpeB626
CmaCh02G004630	Cp4.1LG05g12090	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G004630	CsaV3_2G036380	Cucumber (Chinese Long) v3	cmacucB0703
CmaCh02G004630	Cla97C09G178450	Watermelon (97103) v2	cmawmbB663
CmaCh02G004630	Bhi10G001310	Wax gourd	cmawgoB0764
CmaCh02G004630	CsGy2G027160	Cucumber (Gy14) v2	cgybcmaB231
CmaCh02G004630	Carg24039	Silver-seed gourd	carcmaB1460

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G004630	CmaCh20G009250	Cucurbita maxima (Rimu)	cmacmaB469

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G004630	Melon (DHL92) v3.6.1	cmamedB614
CmaCh02G004630	Melon (DHL92) v3.6.1	cmamedB616
CmaCh02G004630	Melon (DHL92) v3.5.1	cmameB534