Carg27475 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27475
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Binding partner of acd11 1
Location	Cucurbita_argyrosperma_scaffold_422 : 4007 .. 6465 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGGTATTCAATTTTTGTTTATTTTTTATGTTCGTTGTCTTCACTATCTGTTTGATTTCTGGCCATGTTATTTTCCGAAATTTTCATTCTGTTCTTGGGCGTGATTACTACTTGTTATCACTTAGGATTGAAGAAACGATCAGTTTGTTTCATTTTTTTTCCTCTGTGGTTTTTTATGAACGAATGCGTGAATTCGTATTGAGGAGATGGAGAATGTGTACCTCCGGTGTCGTAATTTCATAATACTGGAATTTCGGAAGCACCGAAACCGTCGAAATTCTTCTTTGATTTTGGTTACTTTTGTGTAATCGTTACAGTTTCTTTGTTTTGTTTATGGTGGTTGCAGATGCGAACGGTGAGAGTTACAAATGTTTCCTTGGGCGCGACGGAGAAAAATTTGAGAGAATTTTTTTCTTTCTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGTAAGATTGATCTACTAATGTCTCTAAATTGTACTTCGTCTGTTTTTTTAGTTCGATTGGAAACTGGTGATGAGCAGTGGAATTCTTGATCTTGTTTCTTCTCTTCATTTTGTTCTCCAACTGTTTTTCCATATGCATTTTCATTTATTTTCCTTTGTTTTCTTCTAGGGACAATGAGCAATTTCAAGTTGCATTTGTTACCTTCAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGTCCAAACCATTCTCTATTCTTCTCTTTCTTGATTTCGATTGTCTTTCTTCTTGGTCAGTAGATCATCTGAATGATTTTATTTTTAGTGTTCTTATGCATTTAAAGTTTCATCAGAAATCGTTTCCGGCAAGTAGAAATTCTCTTCTGTTATGAAATCTGGCTCCAAGAAATGATATGTTTTGGAAATTACTTAGAACAGAGTTTTATTCTTCAGAAAAGAGAAGATTTAACAAGTTCAACTATTCAATATGGTTGCATAATGTGTTCAGTCGCTTTTGAATGCGTAGATGAATAGTTAAATTCTTTCTCATACATCTAAGATCGAAAAATACTTTAGTTCTTTCTCTCTCATTAAATAATCCCTCGGCTACCTCGACTGACCGACCGAGAAAAGAAAGTGAAAGAGACTTCTTTCATTCATATGGATTTTGATTTTTCTGCATGTATCCATGGAGATAATTCTCACATCTTTGTTGAAAAATTCTTTTGTAATTCCTTACTTAAGCATTCAGTATCCTTAAGTAAATACCGAGTCTCCGCCTACACAAGAAAATTGTTGATAAAACTCCAAAATGACACTTCTCTTCCATTTTTTTTTTCTCCTTATCATTCAGAAAAGACAAAAAAAATTCTATAGTAGCAAACATTCTAGAGAATTTCTCTTAGATTTGAATCCACAGCTGACGATAGAACTATAATAGATATCTATTATCGGTTTCCTACTCACACGAGCCCATATCCTTGCTTATGTTAACTTTTCCTAGAAGAAATTTGTGATAGAGGCTTTTTCTTGTTTCATCAACGAGAATTGGCCCTCTATCATCGATCGGGTGAGAGGAAAGTGACCTGTGATCTTACCTGACTAACTGTTTTGTGTCTCTCAGGGAGCTACAATTGTTGATCAACCTATAAGCATTGTTTCTGCACCAGATTATAACCTTCCTGCTGTTGCTGCCAGTGACCCTCCAGCAGCGTCCGCTCCAGTATTTTCGATCTTTACCCTTAGCAGTATTTTCGATCTCGTTACTTCAAATCCTGACATGAATGAATGAATAATCATGTTTCAGCAGGCTACAGAGAACACAGGCGCTGAAACTGCTGGAACTGCTGGAACTACTGGAACTACTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTTAGCAGCATGCTGGCCAAAGGGTTCATTTTGGGCAAAGATGCGCTCAATAGGGCGAAGTCTTTCGATGAGAGGCACCGGTTGACTTCGACAGCCTCATTGAAAGTCGCTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAAATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAGAGAAATGGATGAGAAGTTTCAAGTGTCCGAGAAAACCAAGGCGGCAGTGAACAATGCAGGATCAGCCATAATGACTAACCGCTATGTCTCGACCGGGGCTTCGTGGGTTTCCCAGACGTTTCAAAGAGTCGCGAAAGCAGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGATGTTAGCTGAGGATCAACAAGGGAAACATGGGACTCCAAATGTGAAGCCGTGAGCATCCCAATGTTTGGCCAAAAACAATGTGAGGACCAATTCTTAGCTTGCTCTACTTTCATCTCAGTTTAGTATTAGGGAGTGCGTACACACAAATAAGCTTACATTACATGCTTATGTTGTAATTCAACCATATGAAAACCATTTATGCTATGTGATAAAGAATCCATGAATGAAAAAAAAAGAGCTATTT

mRNA sequence

ATGGCGGTTGTTTCTTTGTTTTGTTTATGGTGGTTGCAGATGCGAACGGTGAGAGTTACAAATGTTTCCTTGGGCGCGACGGAGAAAAATTTGAGAGAATTTTTTTCTTTCTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAGCAATTTCAAGTTGCATTTGTTACCTTCAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAACCTATAAGCATTGTTTCTGCACCAGATTATAACCTTCCTGCTGTTGCTGCCAGTGACCCTCCAGCAGCGTCCGCTCCACAGGCTACAGAGAACACAGGCGCTGAAACTGCTGGAACTGCTGGAACTACTGGAACTACTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTTAGCAGCATGCTGGCCAAAGGGTTCATTTTGGGCAAAGATGCGCTCAATAGGGCGAAGTCTTTCGATGAGAGGCACCGGTTGACTTCGACAGCCTCATTGAAAGTCGCTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAAATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAGAGAAATGGATGAGAAGTTTCAAGTGTCCGAGAAAACCAAGGCGGCAGTGAACAATGCAGGATCAGCCATAATGACTAACCGCTATGTCTCGACCGGGGCTTCGTGGGTTTCCCAGACGTTTCAAAGAGTCGCGAAAGCAGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGATGTTAGCTGAGGATCAACAAGGGAAACATGGGACTCCAAATGTGAAGCCGTGAGCATCCCAATGTTTGGCCAAAAACAATGTGAGGACCAATTCTTAGCTTGCTCTACTTTCATCTCAGTTTAGTATTAGGGAGTGCGTACACACAAATAAGCTTACATTACATGCTTATGTTGTAATTCAACCATATGAAAACCATTTATGCTATGTGATAAAGAATCCATGAATGAAAAAAAAAGAGCTATTT

Coding sequence (CDS)

ATGGCGGTTGTTTCTTTGTTTTGTTTATGGTGGTTGCAGATGCGAACGGTGAGAGTTACAAATGTTTCCTTGGGCGCGACGGAGAAAAATTTGAGAGAATTTTTTTCTTTCTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAGCAATTTCAAGTTGCATTTGTTACCTTCAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAACCTATAAGCATTGTTTCTGCACCAGATTATAACCTTCCTGCTGTTGCTGCCAGTGACCCTCCAGCAGCGTCCGCTCCACAGGCTACAGAGAACACAGGCGCTGAAACTGCTGGAACTGCTGGAACTACTGGAACTACTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTTAGCAGCATGCTGGCCAAAGGGTTCATTTTGGGCAAAGATGCGCTCAATAGGGCGAAGTCTTTCGATGAGAGGCACCGGTTGACTTCGACAGCCTCATTGAAAGTCGCTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAAATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAGAGAAATGGATGAGAAGTTTCAAGTGTCCGAGAAAACCAAGGCGGCAGTGAACAATGCAGGATCAGCCATAATGACTAACCGCTATGTCTCGACCGGGGCTTCGTGGGTTTCCCAGACGTTTCAAAGAGTCGCGAAAGCAGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGATGTTAGCTGAGGATCAACAAGGGAAACATGGGACTCCAAATGTGAAGCCGTGA

Protein sequence

MAVVSLFCLWWLQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKEKMLAEDQQGKHGTPNVKP

Homology

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BLAST of Carg27475 vs. NCBI nr
Match: XP_022943432.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 252/262 (96.18%), Postives = 253/262 (96.56%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAAS--AXXXXXXXXXXXXXXXXXXXXXXXX 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAAS  A      XXXXXXXXXXXXXXXXXX
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPATENTGAXXXXXXXXXXXXXXXXXX 120

Query: 132 MQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGT 191
           MQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGT
Sbjct: 121 MQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGT 180

Query: 192 TVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQ 251
           TVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQ
Sbjct: 181 TVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQ 240

Query: 252 KTKEKMLAEDQQGKHGTPNVKP 272
           KTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KTKEKMLAEDQQGKHGTPNVKP 262

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BLAST of Carg27475 vs. NCBI nr
Match: XP_022943431.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 2.8e-107
Identity = 258/263 (98.10%), Postives = 259/263 (98.48%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA---XXXXXXXXXXXXXXXXXXXXXXX 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA   XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 132 XMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 191
           XMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG
Sbjct: 121 XMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 180

Query: 192 TTVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 251
           TTVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS
Sbjct: 181 TTVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 240

Query: 252 QKTKEKMLAEDQQGKHGTPNVKP 272
           QKTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 QKTKEKMLAEDQQGKHGTPNVKP 263

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BLAST of Carg27475 vs. NCBI nr
Match: XP_022986587.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 389.8 bits (1000), Expect = 7.5e-105
Identity = 244/260 (93.85%), Postives = 246/260 (94.62%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA        XXXXXXXXXXXXXXXXMQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQAAENTGXXXXXXXXXXXXXXXXMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERH+LT TAS KVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
           VN  XXXXXXXXXXXX TKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 VNXXXXXXXXXXXXXXXTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 260

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BLAST of Carg27475 vs. NCBI nr
Match: XP_022986589.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 243/260 (93.46%), Postives = 245/260 (94.23%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA         XXXXXXXXXXXXXXXMQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA-PAAENTGAXXXXXXXXXXXXXXXMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERH+LT TAS KVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
           VN  XXXXXXXXXXXX TKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 VNXXXXXXXXXXXXXXXTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 259

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BLAST of Carg27475 vs. NCBI nr
Match: XP_023512142.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 234/260 (90.00%), Postives = 236/260 (90.77%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA              XXXXXXXXX MQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASA----PATENTGAETXXXXXXXXXAMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERH+LTSTAS KVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
               XXXXXXXXXXXX   AAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 256

[Close]

BLAST of Carg27475 vs. TAIR10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 224.9 bits (572), Expect = 5.8e-59
Identity = 133/260 (51.15%), Postives = 174/260 (66.92%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + M TV+V+NVSLGAT+++L+EFFSFSG+I ++E + + E+ ++A+VTFKD +GAET++L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNL-PAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXM 131
           LSGATIVD  + +  APDY L P   AS  P  S                         +
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDS---------------NKSPKAGDSVL 120

Query: 132 QKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTT 191
           +KAEDVVSSMLAKGFILGKDA+ +AKS DE+H+LTSTAS KVAS D+KIG ++KI+ GT 
Sbjct: 121 RKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTV 180

Query: 192 VVNEKXXXXXXXXXXXXKTKAA-------VNNAGSAIMTNRYVSTGASWVSQTFQRVAKA 251
           VV EK            KTK+A       V+NAGSAIM NRYV TGA+WV+  F +VAKA
Sbjct: 181 VVGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKA 240

Query: 252 AVDVSQKTKEKMLAEDQQGK 264
           A +V QK KEK+   +++ K
Sbjct: 241 AEEVGQKAKEKVGMAEEEDK 245

[Close]

BLAST of Carg27475 vs. TAIR10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 216.1 bits (549), Expect = 2.7e-56
Identity = 121/251 (48.21%), Postives = 168/251 (66.93%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + M TV+V+NVSL ATE++L+EFFSFSG+I ++E + +N+  ++A+VTFKD +GAET++L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQ 131
           L+G+TIVD  +++  +PDY LP  A +   +                            +
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLK----------ESNKSSSPTREDVSVFR 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVS M++KGF+LGKDA+ +AKS DE+H+LTSTAS +V S D++IG +EKI+ GTTV
Sbjct: 121 KAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTV 180

Query: 192 VNEKXXXXXXXXXXXXKTKAA-------VNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 251
           V+EK            KTK+A       V+NAGSAIM NRYV TGA+WV+  F RV+KAA
Sbjct: 181 VSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAA 240

Query: 252 VDVSQKTKEKM 256
            +V QK KEK+
Sbjct: 241 EEVGQKAKEKV 241

[Close]

BLAST of Carg27475 vs. TAIR10
Match: AT1G67950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-46
Identity = 108/238 (45.38%), Postives = 151/238 (63.45%), Query Frame = 0


Query: 14  MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLS 73
           ++TV+++NVSL  ++K+++EFFSFSG+I++VEMR + ++ QVA+VTFKD +GAET++LL+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 74  GATIVDQPISIVSAPDYNLPAVA-ASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQK 133
           GA I D  +SI  A +Y LP  A A D    S                         ++K
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALALDSQEHS--------------------FNGFSVKK 147

Query: 134 AEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVV 193
           AEDVV+ M+ +G+ LGKDA+ +AK+FD+RH L S AS  +ASLD K+GLSEK+S+GTTVV
Sbjct: 148 AEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVV 207

Query: 194 NEKXXXXXXXXXXXXKTKAAVN-------NAGSAIMTNRYVSTGASWVSQTFQRVAKA 244
           NEK             TK+A+        +A +A+M N YVS+GASW S  F  V KA
Sbjct: 208 NEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA 245

[Close]

BLAST of Carg27475 vs. TAIR10
Match: AT5G16840.2 (binding partner of acd11 1)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 109/253 (43.08%), Postives = 149/253 (58.89%), Query Frame = 0


Query: 13  QMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILL 72
           Q+R+V+V N+S GATE +++EFFSFSGE+E ++++  NE    A+VTFK+ +GAET++LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNE--HSAYVTFKETQGAETAVLL 63

Query: 73  SGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQK 132
           SGA+I DQ + I  AP+Y+ PA   ++  ++ A                        +QK
Sbjct: 64  SGASIADQSVIIELAPNYSPPAAPHAETQSSGA---------------------ESVVQK 123

Query: 133 AEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVV 192
           AEDVVSSMLAKGFILGKDA+ +AK+FDE+H  TSTA+                       
Sbjct: 124 AEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXX 183

Query: 193 NEKXXXXXXXXXXXXKTKA-------AVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAV 252
              XX          +TK+        V++AGSA+M NRYV TG SW +  F RVA+AA 
Sbjct: 184 XXXXXAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAG 233

Query: 253 DVSQKTKEKMLAE 259
           +V QKTKEK+ AE
Sbjct: 244 EVGQKTKEKVEAE 233

[Close]

BLAST of Carg27475 vs. TAIR10
Match: AT5G32450.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-39
Identity = 113/261 (43.30%), Postives = 159/261 (60.92%), Query Frame = 0


Query: 15  RTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSG 74
           R+V+V NVS  ATE+ + EFFSFSG+IE +E++K+  Q ++AFVTF DPK  E ++LLSG
Sbjct: 5   RSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSG 64

Query: 75  ATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQKAE 134
           ATIVDQ ++I  A +Y +      +                              + KA+
Sbjct: 65  ATIVDQIVTITRAENY-VQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQ 124

Query: 135 DVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVV-- 194
           DVV+++LAKG  LG+DA+N+AK+FDE+H+L + AS KV+S D+++GL+EK+SVG + V  
Sbjct: 125 DVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVXX 184

Query: 195 -----NEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDV 254
                   XXXXXXXXXXXX     +N+ GSA+ ++RYV+ GA+W S  F +VA+     
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXRKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVA 244

Query: 255 SQKTKEKM-LAEDQQGKHGTP 268
             KTKEK  LA        TP
Sbjct: 245 GSKTKEKFNLAVSNMSSKDTP 264

[Close]

BLAST of Carg27475 vs. Swiss-Prot
Match: sp|Q9LFD5|BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-40
Identity = 107/253 (42.29%), Postives = 148/253 (58.50%), Query Frame = 0


Query: 13  QMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILL 72
           Q+R+V+V N+S GATE +++EFFSFSGE+E ++++ +      A+VTFK+ +GAET++LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLL 63

Query: 73  SGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQK 132
           SGA+I DQ + I  AP+Y+ PA   ++  ++ A                        +QK
Sbjct: 64  SGASIADQSVIIELAPNYSPPAAPHAETQSSGA---------------------ESVVQK 123

Query: 133 AEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVV 192
           AEDVVSSMLAKGFILGKDA+ +AK+FDE+H  TSTA+                       
Sbjct: 124 AEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXX 183

Query: 193 NEKXXXXXXXXXXXXKTKA-------AVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAV 252
              XX          +TK+        V++AGSA+M NRYV TG SW +  F RVA+AA 
Sbjct: 184 XXXXXAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAG 232

Query: 253 DVSQKTKEKMLAE 259
           +V QKTKEK+ AE
Sbjct: 244 EVGQKTKEKVEAE 232

[Close]

BLAST of Carg27475 vs. Swiss-Prot
Match: sp|P87216|VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.1e-04
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 17 VRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSGAT 76
          V VTN+S   TEK + +FFSF G++  +   K  E  Q A + F+ P   +T++LL  A 
Sbjct: 5  VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGET-QTAKIQFERPSATKTALLLQDAL 64

Query: 77 IVDQPISIVS 87
          +    I I S
Sbjct: 65 LGQNKIQITS 73

[Close]

BLAST of Carg27475 vs. TrEMBL
Match: tr|A0A0A0LRG1|A0A0A0LRG1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 2.9e-81
Identity = 214/250 (85.60%), Postives = 224/250 (89.60%), Query Frame = 0


Query: 15  RTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSG 74
           RTVRVTNVSL ATEK+LR+FFSFSGEIEFVEMR DNE+ Q+AFVTFKD KGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63

Query: 75  ATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQKAE 134
           ATIVDQP+SI SAPDYNLPAV AS P      XXXXXXXXXXXXXXXXXXXXXXX QKAE
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAP-----VXXXXXXXXXXXXXXXXXXXXXXXXQKAE 123

Query: 135 DVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVVNE 194
           DVVSSMLAKGF LGKDALN+AKSFDERH+LTSTAS KVASLDQKIGLSEKISVGTT    
Sbjct: 124 DVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXX 183

Query: 195 KXXXXXXXXXXXXKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKEK 254
            XXXXXXXXXXXX   AAV+NAGSAIMTNRYV TGASWVSQTFQRVAKAAVDVSQKTKEK
Sbjct: 184 XXXXXXXXXXXXXXXXAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEK 243

Query: 255 MLAEDQQGKH 265
           +LAE+ QGKH
Sbjct: 244 VLAEEDQGKH 248

[Close]

BLAST of Carg27475 vs. TrEMBL
Match: tr|A0A1S4E2B3|A0A1S4E2B3_CUCME (binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498392 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 173/236 (73.31%), Postives = 184/236 (77.97%), Query Frame = 0


Query: 29  KNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSGATIVDQPISIVSAP 88
           +     FSFSGEIEFVEMR DNE+ Q+AFVTFKDPKGAETSILLSGATIVDQP+SI SAP
Sbjct: 56  ERFERLFSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLSGATIVDQPVSISSAP 115

Query: 89  DYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQKAEDVVSSMLAKGFILG 148
           DYNLPAV AS P A                           +QK EDVVSSMLAKGF LG
Sbjct: 116 DYNLPAVDASAPVAVPV------STPAIDNTTSTTTTAGSAIQKTEDVVSSMLAKGFTLG 175

Query: 149 KDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVVNEKXXXXXXXXXXXXK 208
           KDALN+AKSFDERH+LTSTAS KVASLDQKIGLSEKISVGTT     XXXXXXXXXXXX 
Sbjct: 176 KDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXX 235

Query: 209 TKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKEKMLAEDQQGKH 265
             AAV+NAGSA+M NRYV TGASWVSQTFQRVAKAAVDVSQKTKEK+LAE+ QGKH
Sbjct: 236 XXAAVSNAGSALMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKH 285

[Close]

BLAST of Carg27475 vs. TrEMBL
Match: tr|A0A2C9VA85|A0A2C9VA85_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G125200 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.5e-66
Identity = 148/259 (57.14%), Postives = 187/259 (72.20%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + +RTV+V+NVSLGATE++++EFFSFSG+I++VE+  + E+ Q+A+VTF+DP+GAET++L
Sbjct: 1   MSIRTVKVSNVSLGATEQDIKEFFSFSGDIDYVELHSETERSQIAYVTFRDPQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQ 131
           LSGATIVDQ + I  APDY LPA AAS P   +                         +Q
Sbjct: 61  LSGATIVDQSVVIELAPDYKLPA-AASVPTTPT--------------EKTTAPGRESAIQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAED+VSSMLAKGFILGKDALN+AK+FDE+HR TSTA+ KVASLDQKIGLSEKI+ GT +
Sbjct: 121 KAEDIVSSMLAKGFILGKDALNQAKAFDEKHRFTSTATSKVASLDQKIGLSEKITAGTVL 180

Query: 192 VNEKXXXXXXXXXXXXKTKAA-------VNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 251
           VN+K             TK+A       V+NAGSAIM NRYV TGASWV+  F+RVAKAA
Sbjct: 181 VNDKMREVDEKFRVSETTKSAIAAAEQTVSNAGSAIMKNRYVLTGASWVTGAFKRVAKAA 240

Query: 252 VDVSQKTKEKMLAEDQQGK 264
            DV QKTKEK+ AE++Q +
Sbjct: 241 GDVGQKTKEKVSAEEEQSR 244

[Close]

BLAST of Carg27475 vs. TrEMBL
Match: tr|B9S228|B9S228_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1326600 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.6e-66
Identity = 153/275 (55.64%), Postives = 194/275 (70.55%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + + TV+V+NVSLGATE++++EFFSFSG+I++VE+  DNE+ Q+A+VTFKD +GAET++L
Sbjct: 1   MAITTVKVSNVSLGATEQDIKEFFSFSGDIDYVELLGDNERSQIAYVTFKDQQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAXXXXXXXXXXXXXXXXXXXXXXXXMQ 131
           LSGATIVDQ ++I  APDY LPA AAS P  A+                          Q
Sbjct: 61  LSGATIVDQSVTIELAPDYKLPA-AASVPTTAT--------------ESSTASGAESAFQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAED+VSSMLAKGFILGKDA+N+AK+FDE+H+ TSTA+ KVASLD+KIGL+EKIS GTT+
Sbjct: 121 KAEDIVSSMLAKGFILGKDAVNKAKAFDEKHQFTSTATSKVASLDEKIGLTEKISAGTTL 180

Query: 192 VNEKXXXXXXXXXXXXKTKAA-------VNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 251
           VN+K             TK+A       V+NAGSAIM NRYV TGASWV+  F RVAKAA
Sbjct: 181 VNDKVREVDEKFRVSETTKSAFAAAEQTVSNAGSAIMKNRYVLTGASWVTGAFNRVAKAA 240

Query: 252 VDVSQKTKEKMLAEDQQGK--------HGT--PNV 270
            +V QKTKEK+LAE++Q +        HGT  PN+
Sbjct: 241 GEVGQKTKEKVLAEEEQNQVAEGYTQIHGTDSPNM 260

[Close]

BLAST of Carg27475 vs. TrEMBL
Match: tr|A0A1S3CAU8|A0A1S3CAU8_CUCME (binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498392 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 162/219 (73.97%), Postives = 172/219 (78.54%), Query Frame = 0


Query: 46  MRKDNEQFQVAFVTFKDPKGAETSILLSGATIVDQPISIVSAPDYNLPAVAASDPPAASA 105
           MR DNE+ Q+AFVTFKDPKGAETSILLSGATIVDQP+SI SAPDYNLPAV AS P A   
Sbjct: 1   MRNDNERSQLAFVTFKDPKGAETSILLSGATIVDQPVSISSAPDYNLPAVDASAPVAVPV 60

Query: 106 XXXXXXXXXXXXXXXXXXXXXXXXMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLT 165
                                   +QK EDVVSSMLAKGF LGKDALN+AKSFDERH+LT
Sbjct: 61  ------STPAIDNTTSTTTTAGSAIQKTEDVVSSMLAKGFTLGKDALNKAKSFDERHQLT 120

Query: 166 STASLKVASLDQKIGLSEKISVGTTVVNEKXXXXXXXXXXXXKTKAAVNNAGSAIMTNRY 225
           STAS KVASLDQKIGLSEKISVGTT     XXXXXXXXXXXX   AAV+NAGSA+M NRY
Sbjct: 121 STASSKVASLDQKIGLSEKISVGTTXXXXXXXXXXXXXXXXXXXXAAVSNAGSALMANRY 180

Query: 226 VSTGASWVSQTFQRVAKAAVDVSQKTKEKMLAEDQQGKH 265
           V TGASWVSQTFQRVAKAAVDVSQKTKEK+LAE+ QGKH
Sbjct: 181 VLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKH 213

The following BLAST results are available for this feature:

BLAST of Carg27475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943432.1	2.1e-107	96.18	binding partner of ACD11 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022943431.1	2.8e-107	98.10	binding partner of ACD11 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022986587.1	7.5e-105	93.85	binding partner of ACD11 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022986589.1	1.4e-103	93.46	binding partner of ACD11 1-like isoform X2 [Cucurbita maxima]	[more]
XP_023512142.1	1.3e-101	90.00	binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27475 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	5.8e-59	51.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	2.7e-56	48.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	4.3e-46	45.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.3e-42	43.08	binding partner of acd11 1	[more]
AT5G32450.1	1.0e-39	43.30	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg27475 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFD5\|BPA1_ARATH	2.6e-40	42.29	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
sp\|P87216\|VIPI_SCHPO	5.1e-04	37.14	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Carg27475 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRG1\|A0A0A0LRG1_CUCSA	2.9e-81	85.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1	[more]
tr\|A0A1S4E2B3\|A0A1S4E2B3_CUCME	5.6e-72	73.31	binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034983...	[more]
tr\|A0A2C9VA85\|A0A2C9VA85_MANES	3.5e-66	57.14	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G125200 PE=4 SV=...	[more]
tr\|B9S228\|B9S228_RICCO	4.6e-66	55.64	Nucleic acid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_13266...	[more]
tr\|A0A1S3CAU8\|A0A1S3CAU8_CUCME	1.0e-65	73.97	binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034983...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27475-RA	Carg27475-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..85 e-value: 1.5E-8 score: 44.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..80 e-value: 6.7E-8 score: 32.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..89 score: 12.049
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 12..94 e-value: 3.6E-11 score: 44.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..271
None	No IPR available	PANTHER	PTHR44136	FAMILY NOT NAMED	coord: 13..264
None	No IPR available	PANTHER	PTHR44136:SF6	BINDING PARTNER OF ACD11 1	coord: 13..264
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 14..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27475	Cla012993	Watermelon (97103) v1	carwmB0542
Carg27475	Csa2G437070	Cucumber (Chinese Long) v2	carcuB0574
Carg27475	MELO3C021893	Melon (DHL92) v3.5.1	carmeB0550
Carg27475	ClCG09G016890	Watermelon (Charleston Gray)	carwcgB0529
Carg27475	CSPI02G27720	Wild cucumber (PI 183967)	carcpiB0580
Carg27475	Cucsa.318780	Cucumber (Gy14) v1	carcgyB0622
Carg27475	CmaCh20G009250	Cucurbita maxima (Rimu)	carcmaB0760
Carg27475	CmoCh20G009310	Cucurbita moschata (Rifu)	carcmoB0738
Carg27475	Lsi10G002580	Bottle gourd (USVL1VR-Ls)	carlsiB494
Carg27475	Cp4.1LG16g01810	Cucurbita pepo (Zucchini)	carcpeB0770
Carg27475	CsGy2G027160	Cucumber (Gy14) v2	carcgybB0550
Carg27475	MELO3C021893.2	Melon (DHL92) v3.6.1	carmedB0556
Carg27475	CsaV3_2G036380	Cucumber (Chinese Long) v3	carcucB0581
Carg27475	Cla97C09G178450	Watermelon (97103) v2	carwmbB0570
Carg27475	Bhi10G001310	Wax gourd	carwgoB0654

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None