CsGy2G024070 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G024070
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 31832155 .. 31835724 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGGTTATTTTGGTAAAAACTCCTGGCATCATCTAAAATCAACGTTTGGTTGAAGGGTTTATCGCTGAAGCAATGGTTTTTTATAAGCCTGGGTTTTTTTAAAAGGAATCTCTCCTTCTCCAGGTAAGTCGCCTCCTTTTCTCTCAATTTTGTTGATATCTTCTGCTTTCAAATTCTAGATGAGTTGCGAGTTTTTTTTCGAAATAGGCGATTCATGTGTGAATTTTTCAATGTAGTTTAAGATTATTGGTTAGACCCTGATTTCAATTATAGGCTTTAAACCATTATGGAGAGATAAATGGTAGCAAAGTTTTACGCCCCCCAAAACTTAGAAGTCGTTTTGGCTTGAACAATAAGTGAGTGGGATTCAGACTTTTGACCTGTTCGTACCTTAGCTGTGTTCACGTTGGTAAAACTTGGATGTTCTTTGAGAACAGTTTCCAAATAACAAGGCCTTAATCTTCCGTTAGACAATTTTGTGCATCCACTAAGATGTCATGAATGTTAGACTTGGCCTAAGGCTTACCTTTATGCTCAAATTTCTCATGGTTTGCCCTCCAATTCAATTTTTGTTGAGTTATTTGCCAATTTTGGATTGCTTTGTGTTGAATCAAATGAATTTTTTGGGTGTTTAGACCATCTGAGATCTGAGAGGTATAGTTTAGTTAAATGATGGGAAGACGTTTCTGGTTTATCTCATGCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAATTTGTTCTTGATCAAGCCGATGTTCTTCAAAATGATACGTCAATCACAAATTCACACAATTTTTTTCTTGCGAAGATCCTTTCGTACTTGTTACTTAGCAAAACCTCTCTGCACCATTACTGGATCGACTGAGGTCTCTGAATCCCCCGACCTTCCAGACTGGATAAAGTTCTTCGATACTAAAACCTCTACACATTTAGAATCTGAGGACGATGTCTTTGTTATTCCTCCATTGGCGCATTGGCTCGAATCTCAAAAACTCGAAGACAACAATAAAGTTGTTCAAAAGAAATTGGGTGAGACGTGCAATAACGAAGTTGACAAAATAAGTACGATGCTAGAGAATCGATACCCATCACCGGAAAATGTTGCAGAAGCTTTGAATGGAAAGGCTTACAGGGTTTCAAACACTTTGGTTGCACAGCTGCTGAAGAGATTTCATAATGATTGGATCCAAGCATATGGTATTTTCAAGTGGGCAAAAGACCAAATTCCTTATCGGCATTCACCTGAATCTTACAACTCCATGGTTGATATCTTGGGGAAGGCTAAAAACTTTAGACTTATGTGGGAGTTAGTGGATGAGATGAATCATTTAGCTGGATCTGTGAGTTTGGAGACGATGAGTAAGGTTATAAGGAGGCTTGCGAGGGCTGGTAGGCATCAGGAAGCAATCCATGCATTCCGGAATATAGAGAAATATGGGATTAGTACAGACACGACAGCCATGAATGTGTTGATGGATGCATTAGTCAAGGAGGCCAGCGTTGAAGATGCCCATAATGTGTTTCGAGAATTGAAGTGTTCAATACCTTTCAATTTGGCCTCTTTCAATGTTCTAATACACGGGTACTGCAAAGCTAAGAAGCTCGATGAGGCGTGGAAGATTATGGGGGAAGTTGAGAAAAGTGGACTTGAACCTGATGTGATCTCCTACACTGCTTTTATTGAAGCTCATTGCCGTGAAAAGGACTTCCGGAATGTGGATAAAGTCCTGGTGCAAATGGAGCATAAGGGATGCAAGCCTAATGTAATAACTTTCACCATTATAATGCATGCTCTAGGGAAGGCAAAACAGATTAATGAAGCTCTAAAAGTATATGAGAAGATGAAGAAAGAGGGTTGTGTGCCTGATAGTTCATTCTACAGCTCCCTGATATTCATTCTTGGTAAAGCCGGTAGGCTCACTGATGTTAAGGAGATAGTAGAGGATATGGAAAAGCAGGGGGTTACTCCAGATGTGTTGACATATAACACATTGATATCTTGTGCTTGTGCGCATTCACAGGAAGAGACAGCTCTGACATTGCTACTGAAAATGGAGGAGGTTTCGTGCAAGCCAGACCTCAAGACTTACCACCCTTTGTTGAAGATGTTTTGTAGAAAGAAGAGAATGAAGGTGCTGAAGTTTTTGTTAGATCACATGTTCAAGAATGATGTAAGTATTGAAGCTGGGACTTATGCAATTCTGGTACGGGGACTGTGCGAGAATGGGAAACTCCATCTAGCTTGCTCTTTCTTTGGGGAAATGCTGTCGAAGGCGATGGTTCCTAAAGATTCCACATTCAAGATGTTGAAGGAAGAACTTGAAAGGAAAAGTATGTTAGAAGAAATGAAAATCATAGAGAATTTGATGTTCTGTGCAACAAATCAAGATACAAGTTAACAAATGAGACTCTACTAAAGCTACTACAACGTGTGTTCACTCAAGATTTATCCCCTTCAGATAGATGACATAGGACTTTGATTTTTAACAGTGAAAAAAAAAACGATTCAATTTCTCCCTGAAAAGTTTTGTTGCAACCCATTTTTTATGTTTGTTGCATTCTCATATTTTATCTCTCACTTTGAATAGCACGGCATATGTGAATTATGAAGTCAGTCATTATTAAGGTTTCCCTTTGACTTGCAATTTAATTAATCAGTTAGATACTATATGAACATCCACTTGATGAGAGAACTAGTCCCAGTTTCCTCTAAAGTTATTTGATACTTTGAAATGTTTCTTATCACTAAAGTTGTATGGGTATGGTTACTGATAATGATCCATAAACTAGATCGGTAGAATTATAATTTTTTCATCGAGGAATAAGAGAACCATAGTTATTTCTTTCATGTTTTGGATCCTATTCTAATTGCATGATTGCATCTAGTTAGTTGTGACAAAGATCTTAGAGGATTTTAAGTATTCATGTCAACTTTTGATTTTCATCTCAAATTTACCTCGATTATATTAACTTTTGGCATATTCAATGGATGCTCGATGTCAAGAAGGTATTTCTTCAAGGCTGGTCAAAGACATATTTGGTCAATAAATCTAATCAAGGCACTCTCTCACAGCAATTGTTAACCTAATTTGTCAATCTAATCTCAAAGTTTTTAATAACCTAATTTGGTTGATTTTTCTCCAATAAAATGTATTTTCCTTAAACTTGTTAAATTTGATTTATTTTCACAAATGATAGTTGAATAATGTGAAGTCATTGGACTTAGATTGTCTAGTGTATCCTAAAGTATAACATGATGTATTTTATGATATTTTGTGATACTATCATCTTGAGAATGGCATGCCGCGAAGTTCCTTGTGAAATGGAATGGAGTTGTTGACTTTAGTGGAGGATTCTGTTTGAGAATCTGA

mRNA sequence

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGGAATCTCTCCTTCTCCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACAATGGCATGCCGCGAAGTTCCTTGTGAAATGGAATGGAGTTGTTGACTTTAGTGGAGGATTCTGTTTGAGAATCTGA

Coding sequence (CDS)

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGGAATCTCTCCTTCTCCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACAATGGCATGCCGCGAAGTTCCTTGTGAAATGGAATGGAGTTGTTGACTTTAGTGGAGGATTCTGTTTGAGAATCTGA

Protein sequence

MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRGISPSPGRGDAHQTTLQISTPPLNSQWHAAKFLVKWNGVVDFSGGFCLRI

Homology

[Close]

BLAST of CsGy2G024070 vs. NCBI nr
Match: KGN63035.1 (hypothetical protein Csa_2G385040 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCRR------GISP 60
          MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCRR      GISP
Sbjct: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP 60

Query: 61 SPGRGDAHQTTLQISTPPLNSQ 77
          SPGRGDAHQTTLQISTPPLNS+
Sbjct: 61 SPGRGDAHQTTLQISTPPLNSR 82

[Close]

BLAST of CsGy2G024070 vs. NCBI nr
Match: KGN64358.1 (hypothetical protein Csa_1G049970 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCR 50
          MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCR
Sbjct: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCR 49

[Close]

BLAST of CsGy2G024070 vs. TrEMBL
Match: tr|A0A0A0LMB9|A0A0A0LMB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385040 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCRR------GISP 60
          MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCRR      GISP
Sbjct: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP 60

Query: 61 SPGRGDAHQTTLQISTPPLNSQ 77
          SPGRGDAHQTTLQISTPPLNS+
Sbjct: 61 SPGRGDAHQTTLQISTPPLNSR 82

[Close]

BLAST of CsGy2G024070 vs. TrEMBL
Match: tr|A0A0A0LRD2|A0A0A0LRD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G049970 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCR 50
          MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCR
Sbjct: 1  MSNETLRXXXXXXXXXXXXXXXXXTLGYKEDARNRKENISSEWTDLQCR 49

The following BLAST results are available for this feature:

BLAST of CsGy2G024070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63035.1	3.2e-21	91.46	hypothetical protein Csa_2G385040 [Cucumis sativus]	[more]
KGN64358.1	3.5e-07	100.00	hypothetical protein Csa_1G049970 [Cucumis sativus]	[more]

BLAST of CsGy2G024070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G024070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G024070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMB9\|A0A0A0LMB9_CUCSA	2.1e-21	91.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385040 PE=4 SV=1	[more]
tr\|A0A0A0LRD2\|A0A0A0LRD2_CUCSA	2.3e-07	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G049970 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G024070.1	CsGy2G024070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G024070	Csa2G385040	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G024070	CsaV3_2G032840	Cucumber (Chinese Long) v3	cgybcucB065

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G024070	Watermelon (97103) v2	cgybwmbB154
CsGy2G024070	Wax gourd	cgybwgoB164
CsGy2G024070	Cucurbita maxima (Rimu)	cgybcmaB192
CsGy2G024070	Cucurbita maxima (Rimu)	cgybcmaB249
CsGy2G024070	Cucurbita moschata (Rifu)	cgybcmoB185
CsGy2G024070	Cucurbita moschata (Rifu)	cgybcmoB237
CsGy2G024070	Cucurbita pepo (Zucchini)	cgybcpeB182
CsGy2G024070	Cucurbita pepo (Zucchini)	cgybcpeB215
CsGy2G024070	Bottle gourd (USVL1VR-Ls)	cgyblsiB132
CsGy2G024070	Melon (DHL92) v3.5.1	cgybmeB104
CsGy2G024070	Melon (DHL92) v3.6.1	cgybmedB103
CsGy2G024070	Watermelon (Charleston Gray)	cgybwcgB153
CsGy2G024070	Watermelon (97103) v1	cgybwmB106
CsGy2G024070	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G024070	Silver-seed gourd	carcgybB0273
CsGy2G024070	Silver-seed gourd	carcgybB0681