Csa2G385040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G385040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 20110975 .. 20111906 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGGTTATTTTGGTAAAAACTCCTGGCATCATCTAAAATCAACGTTTGGTTGAAGGGTTTATCGCTGAAGCAATGGTTTTTTATAAGCCTGGGTTTTTTTAAAAGGAATCTCTCCTTCTCCAGGTAAGTCGCCTCCTTTTCTCTCAATTTTGTTGATATCTTCTGCTTTCAAATTCTAGATGAGTTGCGAGTTTTTTTTCGAAATAGGCGATTCATGTGTGAATTTTTCAATGTAGTTTAAGATTATTGGTTAGACCCTGATTTCAATTATAGGCTTTAAACCATTATGGAGAGATAAATGGTAGCAAAGTTTTACGCCCCCCAAAACTTAGAAGTCGTTTTGGCTTGAACAATAAGTGAGTGGGATTCAGACTTTTGACCTGTTCGTACCTTAGCTGTGTTCACGTTGGTAAAACTTGGATGTTCTTTGAGAACAGTTTCCAAATAACAAGGCCTTAATCTTCCGTTAGACAATTTTGTGCATCCACTAAGATGTCATGAATGTTAGACTTGGCCTAAGGCTTACCTTTATGCTCAAATTTCTCATGGTTTGCCCTCCAATTCAATTTTTGTTGAGTTATTTGCCAATTTTGGATTGCTTTGTGTTGAATCAAATGAATTTTTTGGGTGTTTAGACCATCTGAGATCTGAGAGGTATAGTTTAGTTAAATGATGGGAAGACGTTTCTGGTTTATCTCATGCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAA

mRNA sequence

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGCCTGGGTTTTTTTAAAAGGAATCTCTCCTTCTCCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAA

Coding sequence (CDS)

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGCCTGGGTTTTTTTAAAAGGAATCTCTCCTTCTCCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAA

Protein sequence

MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISPSPGRGDAHQTTLQISTPPLNSRMIYIHI*
Homology
[Close]
BLAST of Csa2G385040 vs. TrEMBL
Match: A0A0A0LMB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385040 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP 60
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP 60

Query: 61 SPGRGDAHQTTLQISTPPLNSRMIYIHI 89
          SPGRGDAHQTTLQISTPPLNSRMIYIHI
Sbjct: 61 SPGRGDAHQTTLQISTPPLNSRMIYIHI 88

[Close]
BLAST of Csa2G385040 vs. TrEMBL
Match: A0A0A0LRD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G049970 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 50
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 49

[Close]
BLAST of Csa2G385040 vs. NCBI nr
Match: gi|700207916|gb|KGN63035.1| (hypothetical protein Csa_2G385040 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.0e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP 60
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRRAWVFLKGISP 60

Query: 61 SPGRGDAHQTTLQISTPPLNSRMIYIHI 89
          SPGRGDAHQTTLQISTPPLNSRMIYIHI
Sbjct: 61 SPGRGDAHQTTLQISTPPLNSRMIYIHI 88

[Close]
BLAST of Csa2G385040 vs. NCBI nr
Match: gi|700209262|gb|KGN64358.1| (hypothetical protein Csa_1G049970 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 50
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 49

The following BLAST results are available for this feature:
BLAST of Csa2G385040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMB9_CUCSA2.8e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385040 PE=4 SV=1[more]
A0A0A0LRD2_CUCSA3.7e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G049970 PE=4 SV=1[more]
BLAST of Csa2G385040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207916|gb|KGN63035.1|4.0e-43100.00hypothetical protein Csa_2G385040 [Cucumis sativus][more]
gi|700209262|gb|KGN64358.1|5.3e-19100.00hypothetical protein Csa_1G049970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU164035cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G385040.1Csa2G385040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU164035CU164035transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G385040CsGy2G024070Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G385040Cucurbita maxima (Rimu)cmacuB278
Csa2G385040Cucurbita maxima (Rimu)cmacuB696
Csa2G385040Cucurbita moschata (Rifu)cmocuB265
Csa2G385040Cucurbita moschata (Rifu)cmocuB686
Csa2G385040Melon (DHL92) v3.5.1cumeB118
Csa2G385040Watermelon (Charleston Gray)cuwcgB166
Csa2G385040Watermelon (97103) v1cuwmB108
Csa2G385040Cucurbita pepo (Zucchini)cpecuB164
Csa2G385040Cucurbita pepo (Zucchini)cpecuB388
Csa2G385040Bottle gourd (USVL1VR-Ls)culsiB145
Csa2G385040Melon (DHL92) v3.6.1cumedB115
Csa2G385040Silver-seed gourdcarcuB0286
Csa2G385040Silver-seed gourdcarcuB0704
Csa2G385040Watermelon (97103) v2cuwmbB160
Csa2G385040Wax gourdcuwgoB169
Csa2G385040Cucumber (Gy14) v1cgycuB233