CsaV3_2G032840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G032840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 21692297 .. 21694468 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAGAAGCCACGCTGATATTCTTCATACGGGTGGGAAAGAAACAACAAACGATAAATTTTCCATGATCATGAAGCTCCAATACCTACTGCAGCGAAGTTTGAAAGAACTAAATATATTTCAGGTAGACGCCAGAAAAAGCTAAGATTGGGGTTCAGGAGAATGGTGGGTGTTTAGTCCGATCAGTAGAAACGTTGCCGTGGGGCAGCGGCGTAGTGCAGTGGTGGCGGAGAAGGATGGCAAGGAGCGGCTGCCGCGTAGGTTAGAGGTGTGTGCTGGGCGGAGCTGCAGTCGTGTAAAGAAGAAAAATTTGAGGGTTTTTTTTTTCTCACTAAACTAACGTATACCTATAATCTATGCTACCTACCAAATTACCAAAATATCCATGAAAAATATAGTTTTTTTTTTTTAAATAATGTTATTTTAAAAGATAAGGTAAAAAATTAGATATAATGTAAACTACTCTAAAATAAAATAAAATAGAGTAGTAAATTACTAAAAGTCTTGCTGTGTTGATGGAAAGGCACTGATGACCTCGACCTTGACTCCAATGTCTTCTCATTTTGAAGTCGTGGATCGAGTACACAACTTAATTTCGACTTGATTTCACTCATTATTTTTAAAATATTAAAAAAATAGAAAATAAGGTTACATTTACTATATAAAAATGTACATATGAAAATAAATAAACAAGGCCAGCACAATCACTTTTTTCTATATTTATTCCTATATCATTCATTTTATAAATATTTATCATTGATCAAATATGAAAAATTGTTATCATTCATCAATATCTATTATTGCTCAACTATAAAAATTTATTATATTTTATAAATGTTTTTTAAATGAAAAATAGTCCAAAGTTTTAAAAAAATAATGGATAAACGATTAAAAATAACATAGTTAAATTTTCATTTTAAAATACTAGCATTTGAAAACTCATTAGATAGTAGTTCTCAATATATCAATAGATCTTGTGAGAGATAGTCCACCAAAATTTATTAAAAATATAATTTTAAAGTGTTAGCCAATATTAACTCAATATTTTATGAATTTTTAGACATTTTTTACCATTATTCCAAATTATATAAAGAAGCTTAACTAATTTGTGTATTGAAAGTTTTGCAATCTTTTGAATATTTATCCAAATTTAAAAGTTAAATCCCAAATCGCGACTAAATTGGGTCACACACCACAAACATCATCCCAAGTCACCAGAATCCATAGATACTTGAAATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGACGAGGTTATTTTGGTAAAAACTCCTGGCATCATCTAAAATCAACGTTTGGTTGAAGGGTTTATCGCTGAAGCAATGGTTTTTTATAAGCCTGGGTTTTTTTAAAAGGAATCTCTCCTTCTCCAGGTAAGTCGCCTCCTTTTCTCTCAATTTTGTTGATATCTTCTGCTTTCAAATTCTAGATGAGTTGCGAGTTTTTTTTCGAAATAGGCGATTCATGTGTGAATTTTTCAATGTAGTTTAAGATTATTGGTTAGACCCTGATTTCAATTATAGGCTTTAAACCATTATGGAGAGATAAATGGTAGCAAAGTTTTACGCCCCCCAAAACTTAGAAGTCGTTTTGGCTTGAACAATAAGTGAGTGGGATTCAGACTTTTGACCTGTTCGTACCTTAGCTGTGTTCACGTTGGTAAAACTTGGATGTTCTTTGAGAACAGTTTCCAAATAACAAGGCCTTAATCTTCCGTTAGACAATTTTGTGCATCCACTAAGATGTCATGAATGTTAGACTTGGCCTAAGGCTTACCTTTATGCTCAAATTTCTCATGGTTTGCCCTCCAATTCAATTTTTGTTGAGTTATTTGCCAATTTTGGATTGCTTTGTGTTGAATCAAATGAATTTTTTGGGTGTTTAGACCATCTGAGATCTGAGAGGTATAGTTTAGTTAAATGATGGGAAGACGTTTCTGGTTTATCTCATGCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAA

mRNA sequence

ATGAGTGGAGAAGCCACGCTGATATTCTTCATACGGACGCCAGAAAAAGCTAAGATTGGGGTTCAGGAGAATGGTGGGTGTTTAGTCCGATCAGTAGAAACGTTGCCGTGGGGCAGCGGCGTAGTGCAGTGGTGGCGGAGAAGGATGGCAAGGAGCGGCTGCCGCGTAGGAATCTCTCCTTCTCCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAA

Coding sequence (CDS)

ATGAGTGGAGAAGCCACGCTGATATTCTTCATACGGACGCCAGAAAAAGCTAAGATTGGGGTTCAGGAGAATGGTGGGTGTTTAGTCCGATCAGTAGAAACGTTGCCGTGGGGCAGCGGCGTAGTGCAGTGGTGGCGGAGAAGGATGGCAAGGAGCGGCTGCCGCGTAGGAATCTCTCCTTCTCCAGGTAGGGGCGACGCTCATCAAACAACCCTCCAAATTTCCACGCCTCCATTGAACTCACGTATGATTTACATACACATATAA

Protein sequence

MSGEATLIFFIRTPEKAKIGVQENGGCLVRSVETLPWGSGVVQWWRRRMARSGCRVGISPSPGRGDAHQTTLQISTPPLNSRMIYIHI
Homology
[Close]
BLAST of CsaV3_2G032840 vs. NCBI nr
Match: KGN63035.1 (hypothetical protein Csa_2G385040 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 4.3e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 57 GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI 89
          GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI
Sbjct: 57 GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI 88

[Close]
BLAST of CsaV3_2G032840 vs. TrEMBL
Match: tr|A0A0A0LMB9|A0A0A0LMB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385040 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 57 GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI 89
          GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI
Sbjct: 57 GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI 88

The following BLAST results are available for this feature:
BLAST of CsaV3_2G032840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63035.14.3e-09100.00hypothetical protein Csa_2G385040 [Cucumis sativus][more]
BLAST of CsaV3_2G032840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G032840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G032840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMB9|A0A0A0LMB9_CUCSA2.9e-09100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385040 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G032840.1CsaV3_2G032840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G032840CsGy2G024070Cucumber (Gy14) v2cgybcucB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G032840Silver-seed gourdcarcucB0289
CsaV3_2G032840Silver-seed gourdcarcucB0720
CsaV3_2G032840Cucumber (Gy14) v1cgycucB247
CsaV3_2G032840Cucurbita maxima (Rimu)cmacucB0328
CsaV3_2G032840Cucurbita maxima (Rimu)cmacucB0828
CsaV3_2G032840Cucurbita moschata (Rifu)cmocucB0323
CsaV3_2G032840Cucurbita moschata (Rifu)cmocucB0813
CsaV3_2G032840Cucurbita moschata (Rifu)cmocucB0925
CsaV3_2G032840Cucurbita pepo (Zucchini)cpecucB0193
CsaV3_2G032840Cucurbita pepo (Zucchini)cpecucB0483
CsaV3_2G032840Wild cucumber (PI 183967)cpicucB081
CsaV3_2G032840Bottle gourd (USVL1VR-Ls)cuclsiB157
CsaV3_2G032840Melon (DHL92) v3.5.1cucmeB125
CsaV3_2G032840Melon (DHL92) v3.6.1cucmedB119
CsaV3_2G032840Watermelon (Charleston Gray)cucwcgB174
CsaV3_2G032840Watermelon (97103) v1cucwmB122
CsaV3_2G032840Watermelon (97103) v2cucwmbB161
CsaV3_2G032840Wax gourdcucwgoB176