CsGy2G023920 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G023920
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionGlutamate receptor
LocationChr2 : 31726964 .. 31727275 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTGTTGGCAACGGCGACGGTGGCAGCGAAGGAGGAGGAGGAGGAGAAGGAGAAGGCGACGGGGGCATTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTACGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGGTTCTTTTTTCCTTTTCCTTTTGTTTTGTTGGGGTTAAATTTCAAATTTAATCTCTATAGAAAATTAA

mRNA sequence

ATGCTCTTGTTGGCAACGGCGACGGTGGCAGCGAAGGAGGAGGAGGAGGAGAAGGAGAAGGCGACGGGGGCATTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTACGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGAAAATTAA

Coding sequence (CDS)

ATGCTCTTGTTGGCAACGGCGACGGTGGCAGCGAAGGAGGAGGAGGAGGAGAAGGAGAAGGCGACGGGGGCATTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTACGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGAAAATTAA

Protein sequence

MLLLATATVAAKEEEEEKEKATGALKVKVGVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAAEN
Homology
[Close]
BLAST of CsGy2G023920 vs. NCBI nr
Match: KGN63015.1 (hypothetical protein Csa_2G383370 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 97

[Close]
BLAST of CsGy2G023920 vs. NCBI nr
Match: XP_011649856.1 (PREDICTED: glutamate receptor 2.5-like [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 97

[Close]
BLAST of CsGy2G023920 vs. NCBI nr
Match: XP_008445295.1 (PREDICTED: glutamate receptor 2.5-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 6.9e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D DDYGKVD SCISMALSDFYASRS++KTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVFDWDDYGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAA 97

[Close]
BLAST of CsGy2G023920 vs. NCBI nr
Match: XP_022951722.1 (glutamate receptor 2.5-like [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVL+ + +GK+ ++CISMALSDFYASRSH+KTRV+LK +DSNGTVVDAAAA
Sbjct: 34 GVVLNPNAFGKMGMACISMALSDFYASRSHYKTRVILKTVDSNGTVVDAAAA 85

[Close]
BLAST of CsGy2G023920 vs. NCBI nr
Match: XP_023002220.1 (glutamate receptor 2.1-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVL+ + +GK+ ++CISMALSDFYASRSH++TRV+LK +DSNGTVVDAAAA
Sbjct: 40 GVVLNPNAFGKMGMACISMALSDFYASRSHYRTRVILKTVDSNGTVVDAAAA 91

[Close]
BLAST of CsGy2G023920 vs. TAIR10
Match: AT2G24710.1 (glutamate receptor 2.3)

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D D  + KV + CI+M++SDFY+S   F+TR+V+   DS   VV AA A
Sbjct: 34 GVVTDVDTSHSKVVMLCINMSISDFYSSNPQFETRLVVNVGDSKSDVVGAAIA 86

[Close]
BLAST of CsGy2G023920 vs. TAIR10
Match: AT2G24720.1 (glutamate receptor 2.2)

HSP 1 Score: 47.0 bits (110), Expect = 6.6e-06
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D    Y  V + CI+M+L+DFY+SR  F+TR+V+   DS   VV AA A
Sbjct: 35 GVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVGDSKNDVVGAATA 87

[Close]
BLAST of CsGy2G023920 vs. TAIR10
Match: AT5G11180.1 (glutamate receptor 2.6)

HSP 1 Score: 45.8 bits (107), Expect = 1.5e-05
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          G+VLD++     + L  I+M+LS+FY + + FKTR+VL   DS  TVV AAA+
Sbjct: 39 GIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSKRTVVGAAAS 91

[Close]
BLAST of CsGy2G023920 vs. TAIR10
Match: AT2G29110.1 (glutamate receptor 2.8)

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLD +  + K+ L+ I++ALSDFY    +++TR+ L   DS    V A+AA
Sbjct: 36 GVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQASAA 88

[Close]
BLAST of CsGy2G023920 vs. TAIR10
Match: AT2G29100.1 (glutamate receptor 2.9)

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLD +  + K+ L+ I MA+SDFYA   ++ TR+ L   DS    V A+AA
Sbjct: 33 GVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQASAA 85

[Close]
BLAST of CsGy2G023920 vs. Swiss-Prot
Match: sp|Q9SHV2|GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana OX=3702 GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.4e-05
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D D  + KV + CI+M++SDFY+S   F+TR+V+   DS   VV AA A
Sbjct: 34 GVVTDVDTSHSKVVMLCINMSISDFYSSNPQFETRLVVNVGDSKSDVVGAAIA 86

[Close]
BLAST of CsGy2G023920 vs. Swiss-Prot
Match: sp|Q9SHV1|GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D    Y  V + CI+M+L+DFY+SR  F+TR+V+   DS   VV AA A
Sbjct: 35 GVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVGDSKNDVVGAATA 87

[Close]
BLAST of CsGy2G023920 vs. Swiss-Prot
Match: sp|Q9LFN8|GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-04
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          G+VLD++     + L  I+M+LS+FY + + FKTR+VL   DS  TVV AAA+
Sbjct: 39 GIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSKRTVVGAAAS 91

[Close]
BLAST of CsGy2G023920 vs. Swiss-Prot
Match: sp|Q9LFN5|GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 5.9e-04
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          G+VL S+     + L  I+M+LS+FY + + FKTR+VL   DS  TVV AAA+
Sbjct: 40 GIVLGSNVTLADLSLRAINMSLSEFYNTHNGFKTRIVLNVRDSKQTVVGAAAS 92

[Close]
BLAST of CsGy2G023920 vs. TrEMBL
Match: tr|A0A0A0LMA6|A0A0A0LMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G383370 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.5e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 97

[Close]
BLAST of CsGy2G023920 vs. TrEMBL
Match: tr|A0A1S3BCB6|A0A1S3BCB6_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D DDYGKVD SCISMALSDFYASRS++KTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVFDWDDYGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAA 97

[Close]
BLAST of CsGy2G023920 vs. TrEMBL
Match: tr|A0A1S3BBW2|A0A1S3BBW2_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 39  GKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
           GK+ LSCISMAL+DFYASRS++KTR++L P+DSNG+V+ AAAA
Sbjct: 61  GKMSLSCISMALADFYASRSYYKTRIILNPIDSNGSVIRAAAA 103

[Close]
BLAST of CsGy2G023920 vs. TrEMBL
Match: tr|A0A1S3BCC2|A0A1S3BCC2_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 39  GKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
           GK+ LSCISMAL+DFYASRS++KTR++L P+DSNG+V+ AAAA
Sbjct: 61  GKMSLSCISMALADFYASRSYYKTRIILNPIDSNGSVIRAAAA 103

[Close]
BLAST of CsGy2G023920 vs. TrEMBL
Match: tr|A0A1S3BCC4|A0A1S3BCC4_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488370 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-09
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 30  GVVLDSDD-YGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
           GVV D D  +G++ LSCISMAL D Y+SRS++KTR+VL  +DSN TVVDAAAA
Sbjct: 51  GVVFDLDSVFGEMSLSCISMALDDLYSSRSYYKTRIVLHSIDSNDTVVDAAAA 103

The following BLAST results are available for this feature:
BLAST of CsGy2G023920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63015.11.1e-19100.00hypothetical protein Csa_2G383370 [Cucumis sativus][more]
XP_011649856.11.1e-19100.00PREDICTED: glutamate receptor 2.5-like [Cucumis sativus][more]
XP_008445295.16.9e-1790.38PREDICTED: glutamate receptor 2.5-like [Cucumis melo][more]
XP_022951722.16.0e-1375.00glutamate receptor 2.5-like [Cucurbita moschata][more]
XP_023002220.11.3e-1273.08glutamate receptor 2.1-like [Cucurbita maxima][more]
BLAST of CsGy2G023920 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24710.13.0e-0649.06glutamate receptor 2.3[more]
AT2G24720.16.6e-0649.06glutamate receptor 2.2[more]
AT5G11180.11.5e-0547.17glutamate receptor 2.6[more]
AT2G29110.11.6e-0443.40glutamate receptor 2.8[more]
AT2G29100.11.6e-0445.28glutamate receptor 2.9[more]
BLAST of CsGy2G023920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SHV2|GLR23_ARATH5.4e-0549.06Glutamate receptor 2.3 OS=Arabidopsis thaliana OX=3702 GN=GLR2.3 PE=2 SV=1[more]
sp|Q9SHV1|GLR22_ARATH1.2e-0449.06Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1[more]
sp|Q9LFN8|GLR26_ARATH2.7e-0447.17Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2[more]
sp|Q9LFN5|GLR25_ARATH5.9e-0447.17Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2[more]
BLAST of CsGy2G023920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMA6|A0A0A0LMA6_CUCSA7.5e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G383370 PE=3 SV=1[more]
tr|A0A1S3BCB6|A0A1S3BCB6_CUCME4.5e-1790.38Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1[more]
tr|A0A1S3BBW2|A0A1S3BBW2_CUCME3.5e-0972.09Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1[more]
tr|A0A1S3BCC2|A0A1S3BCC2_CUCME3.5e-0972.09Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1[more]
tr|A0A1S3BCC4|A0A1S3BCC4_CUCME4.6e-0966.04Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488370 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0035235 ionotropic glutamate receptor signaling pathway
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G023920.1CsGy2G023920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availablePANTHERPTHR34836FAMILY NOT NAMEDcoord: 20..82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G023920Csa2G383380Cucumber (Chinese Long) v2cgybcuB057
CsGy2G023920Lsi08G012720Bottle gourd (USVL1VR-Ls)cgyblsiB126
CsGy2G023920MELO3C011322.2Melon (DHL92) v3.6.1cgybmedB101
CsGy2G023920CsaV3_2G032670Cucumber (Chinese Long) v3cgybcucB065
CsGy2G023920Cla97C08G157380Watermelon (97103) v2cgybwmbB153
CsGy2G023920Bhi04G000069Wax gourdcgybwgoB151
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G023920Cucurbita maxima (Rimu)cgybcmaB168
CsGy2G023920Cucurbita moschata (Rifu)cgybcmoB160
CsGy2G023920Cucurbita pepo (Zucchini)cgybcpeB260
CsGy2G023920Melon (DHL92) v3.5.1cgybmeB102
CsGy2G023920Watermelon (Charleston Gray)cgybwcgB152
CsGy2G023920Watermelon (97103) v1cgybwmB105
CsGy2G023920Wild cucumber (PI 183967)cgybcpiB057