CsGy2G023920.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G023920.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Glutamate receptor
Location	Chr2 : 31726964 .. 31727275 (+)
Sequence length	252

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTGTTGGCAACGGCGACGGTGGCAGCGAAGGAGGAGGAGGAGGAGAAGGAGAAGGCGACGGGGGCATTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTACGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGGTTCTTTTTTCCTTTTCCTTTTGTTTTGTTGGGGTTAAATTTCAAATTTAATCTCTATAGAAAATTAA

mRNA sequence

ATGCTCTTGTTGGCAACGGCGACGGTGGCAGCGAAGGAGGAGGAGGAGGAGAAGGAGAAGGCGACGGGGGCATTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTACGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGAAAATTAA

Coding sequence (CDS)

ATGCTCTTGTTGGCAACGGCGACGGTGGCAGCGAAGGAGGAGGAGGAGGAGAAGGAGAAGGCGACGGGGGCATTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTACGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGAAAATTAA

Protein sequence

MLLLATATVAAKEEEEEKEKATGALKVKVGVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAAEN

Homology

[Close]

BLAST of CsGy2G023920.1 vs. NCBI nr
Match: KGN63015.1 (hypothetical protein Csa_2G383370 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 97

[Close]

BLAST of CsGy2G023920.1 vs. NCBI nr
Match: XP_011649856.1 (PREDICTED: glutamate receptor 2.5-like [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 97

[Close]

BLAST of CsGy2G023920.1 vs. NCBI nr
Match: XP_008445295.1 (PREDICTED: glutamate receptor 2.5-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 6.9e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D DDYGKVD SCISMALSDFYASRS++KTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVFDWDDYGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAA 97

[Close]

BLAST of CsGy2G023920.1 vs. NCBI nr
Match: XP_022951722.1 (glutamate receptor 2.5-like [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVL+ + +GK+ ++CISMALSDFYASRSH+KTRV+LK +DSNGTVVDAAAA
Sbjct: 34 GVVLNPNAFGKMGMACISMALSDFYASRSHYKTRVILKTVDSNGTVVDAAAA 85

[Close]

BLAST of CsGy2G023920.1 vs. NCBI nr
Match: XP_023002220.1 (glutamate receptor 2.1-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVL+ + +GK+ ++CISMALSDFYASRSH++TRV+LK +DSNGTVVDAAAA
Sbjct: 40 GVVLNPNAFGKMGMACISMALSDFYASRSHYRTRVILKTVDSNGTVVDAAAA 91

[Close]

BLAST of CsGy2G023920.1 vs. TAIR10
Match: AT2G24710.1 (glutamate receptor 2.3)

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D D  + KV + CI+M++SDFY+S   F+TR+V+   DS   VV AA A
Sbjct: 34 GVVTDVDTSHSKVVMLCINMSISDFYSSNPQFETRLVVNVGDSKSDVVGAAIA 86

[Close]

BLAST of CsGy2G023920.1 vs. TAIR10
Match: AT2G24720.1 (glutamate receptor 2.2)

HSP 1 Score: 47.0 bits (110), Expect = 6.6e-06
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D    Y  V + CI+M+L+DFY+SR  F+TR+V+   DS   VV AA A
Sbjct: 35 GVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVGDSKNDVVGAATA 87

[Close]

BLAST of CsGy2G023920.1 vs. TAIR10
Match: AT5G11180.1 (glutamate receptor 2.6)

HSP 1 Score: 45.8 bits (107), Expect = 1.5e-05
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          G+VLD++     + L  I+M+LS+FY + + FKTR+VL   DS  TVV AAA+
Sbjct: 39 GIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSKRTVVGAAAS 91

[Close]

BLAST of CsGy2G023920.1 vs. TAIR10
Match: AT2G29110.1 (glutamate receptor 2.8)

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLD +  + K+ L+ I++ALSDFY    +++TR+ L   DS    V A+AA
Sbjct: 36 GVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQASAA 88

[Close]

BLAST of CsGy2G023920.1 vs. TAIR10
Match: AT2G29100.1 (glutamate receptor 2.9)

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLD +  + K+ L+ I MA+SDFYA   ++ TR+ L   DS    V A+AA
Sbjct: 33 GVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQASAA 85

[Close]

BLAST of CsGy2G023920.1 vs. Swiss-Prot
Match: sp|Q9SHV2|GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana OX=3702 GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.4e-05
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D D  + KV + CI+M++SDFY+S   F+TR+V+   DS   VV AA A
Sbjct: 34 GVVTDVDTSHSKVVMLCINMSISDFYSSNPQFETRLVVNVGDSKSDVVGAAIA 86

[Close]

BLAST of CsGy2G023920.1 vs. Swiss-Prot
Match: sp|Q9SHV1|GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 30 GVVLD-SDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D    Y  V + CI+M+L+DFY+SR  F+TR+V+   DS   VV AA A
Sbjct: 35 GVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVGDSKNDVVGAATA 87

[Close]

BLAST of CsGy2G023920.1 vs. Swiss-Prot
Match: sp|Q9LFN8|GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-04
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          G+VLD++     + L  I+M+LS+FY + + FKTR+VL   DS  TVV AAA+
Sbjct: 39 GIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSKRTVVGAAAS 91

[Close]

BLAST of CsGy2G023920.1 vs. Swiss-Prot
Match: sp|Q9LFN5|GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 5.9e-04
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 30 GVVLDSD-DYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          G+VL S+     + L  I+M+LS+FY + + FKTR+VL   DS  TVV AAA+
Sbjct: 40 GIVLGSNVTLADLSLRAINMSLSEFYNTHNGFKTRIVLNVRDSKQTVVGAAAS 92

[Close]

BLAST of CsGy2G023920.1 vs. TrEMBL
Match: tr|A0A0A0LMA6|A0A0A0LMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G383370 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.5e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 97

[Close]

BLAST of CsGy2G023920.1 vs. TrEMBL
Match: tr|A0A1S3BCB6|A0A1S3BCB6_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 30 GVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
          GVV D DDYGKVD SCISMALSDFYASRS++KTRVVLKPMDSNGTVVDAAAA
Sbjct: 46 GVVFDWDDYGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAA 97

[Close]

BLAST of CsGy2G023920.1 vs. TrEMBL
Match: tr|A0A1S3BBW2|A0A1S3BBW2_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 39  GKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
           GK+ LSCISMAL+DFYASRS++KTR++L P+DSNG+V+ AAAA
Sbjct: 61  GKMSLSCISMALADFYASRSYYKTRIILNPIDSNGSVIRAAAA 103

[Close]

BLAST of CsGy2G023920.1 vs. TrEMBL
Match: tr|A0A1S3BCC2|A0A1S3BCC2_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 39  GKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
           GK+ LSCISMAL+DFYASRS++KTR++L P+DSNG+V+ AAAA
Sbjct: 61  GKMSLSCISMALADFYASRSYYKTRIILNPIDSNGSVIRAAAA 103

[Close]

BLAST of CsGy2G023920.1 vs. TrEMBL
Match: tr|A0A1S3BCC4|A0A1S3BCC4_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488370 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-09
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 30  GVVLDSDD-YGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNGTVVDAAAA 82
           GVV D D  +G++ LSCISMAL D Y+SRS++KTR+VL  +DSN TVVDAAAA
Sbjct: 51  GVVFDLDSVFGEMSLSCISMALDDLYSSRSYYKTRIVLHSIDSNDTVVDAAAA 103

The following BLAST results are available for this feature:

BLAST of CsGy2G023920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63015.1	1.1e-19	100.00	hypothetical protein Csa_2G383370 [Cucumis sativus]	[more]
XP_011649856.1	1.1e-19	100.00	PREDICTED: glutamate receptor 2.5-like [Cucumis sativus]	[more]
XP_008445295.1	6.9e-17	90.38	PREDICTED: glutamate receptor 2.5-like [Cucumis melo]	[more]
XP_022951722.1	6.0e-13	75.00	glutamate receptor 2.5-like [Cucurbita moschata]	[more]
XP_023002220.1	1.3e-12	73.08	glutamate receptor 2.1-like [Cucurbita maxima]	[more]

BLAST of CsGy2G023920.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24710.1	3.0e-06	49.06	glutamate receptor 2.3	[more]
AT2G24720.1	6.6e-06	49.06	glutamate receptor 2.2	[more]
AT5G11180.1	1.5e-05	47.17	glutamate receptor 2.6	[more]
AT2G29110.1	1.6e-04	43.40	glutamate receptor 2.8	[more]
AT2G29100.1	1.6e-04	45.28	glutamate receptor 2.9	[more]

BLAST of CsGy2G023920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHV2\|GLR23_ARATH	5.4e-05	49.06	Glutamate receptor 2.3 OS=Arabidopsis thaliana OX=3702 GN=GLR2.3 PE=2 SV=1	[more]
sp\|Q9SHV1\|GLR22_ARATH	1.2e-04	49.06	Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1	[more]
sp\|Q9LFN8\|GLR26_ARATH	2.7e-04	47.17	Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2	[more]
sp\|Q9LFN5\|GLR25_ARATH	5.9e-04	47.17	Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2	[more]

BLAST of CsGy2G023920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMA6\|A0A0A0LMA6_CUCSA	7.5e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G383370 PE=3 SV=1	[more]
tr\|A0A1S3BCB6\|A0A1S3BCB6_CUCME	4.5e-17	90.38	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1	[more]
tr\|A0A1S3BBW2\|A0A1S3BBW2_CUCME	3.5e-09	72.09	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1	[more]
tr\|A0A1S3BCC2\|A0A1S3BCC2_CUCME	3.5e-09	72.09	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488371 PE=3 SV=1	[more]
tr\|A0A1S3BCC4\|A0A1S3BCC4_CUCME	4.6e-09	66.04	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488370 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
biological_process	GO:0035235	ionotropic glutamate receptor signaling pathway
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004970	ionotropic glutamate receptor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G023920	CsGy2G023920	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G023920.1.exon.1	CsGy2G023920.1.exon.1	exon
CsGy2G023920.1.exon.2	CsGy2G023920.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G023920.1.CDS.1	CsGy2G023920.1.CDS.1	CDS
CsGy2G023920.1.CDS.2	CsGy2G023920.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G023920.1	CsGy2G023920.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	PANTHER	PTHR34836	FAMILY NOT NAMED	coord: 20..82