CsGy2G009960 (gene) Cucumber (Gy14) v2

NameCsGy2G009960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionlate embryogenesis abundant protein 1 isoform X1
LocationChr2 : 9629247 .. 9631015 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAAACTCTTAACCTATATAAACTGCCCTAAATAATGTTCAAAAATCAAAAAACCAAAAACAAAAAGTCACCTTGATTAGTTTCACAGCTACCAATTCAAGTTTCTTATTTTCCAAACCAAAAAAAAGAAAAAAGAAAAAGGACAGAAAGAGAAGGAGAAATATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGTCATTCCAACTTTCTATTCCTTTCTTTTGCTTTTTACTTGAAATAAGTTTTGATAACTCTCCAAAATTAAATCTTACATTATTAGTTAGTAGCCTCGTACCTAAATTTTATATTTACTTAATGGTTAGATATCTCATTTTAGTTTTCGTACTTTTATAGTTTAATTATTGATTAGACCCGACCATTTTCTTGAATTGAAATCTTCACTTATTTTTTCTTTTTTTGTAAAAAGTTAAATAAAACCGTTTAAAACGCACTCATTTAACCTTATTCGATTTTGTCCAATTTTGAATTTTTTTCCAAATATAACTTTGAAATTGTAAAATCTTAATTTTTTTTCATAATATATTTTGTTTTTGGGGTTTGGATAATGAGGGGCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTGTGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGGTAATACTTCTAGAATGCATTTAATCATTCCAAACAAATTTTTAATACTGAAATTCGGTATCAACTGTAAATTTATAATCTTCGGAAGGGAATCAAACAAATATATGCCTGCAAAATAGAAAAAAACTTGCATCGATGTGGTGCTTGACCATCAATACTCCGACAATCAAGTCCCTCTAACTGTTTAAAGAGAGCTAGAGAGTATAAAAGTTAATAGGTATTTCAATGTCCATCAAATGACATATCATTGTTCCCTTGATTTATAAGAAATAAGTCTTGTACCGGTTATTTACTAATTAATCCTTGGGTAATTAATTAAGTTATTACTTAGTAACACAAGCATGTGCAAAAGTAAAACACTTCACCTAGTCTTTTCTGTCATAAGTTTGAGCCCTATACTTAGATACTATGACTTGATGGCCGACGATTCTATATACGAGTCCGTCTTTCAAACTTCTACTCTTCAACTCTCTCTAAACCATTATTAACTTGATCGTCGGAATGTTGGTGGTCAAGCAACATATTGGTACTAGTTTTTCTATTTTGAATAGCATTTGTTTGATTCTCTTTCTAAGATTACAAATTTACAGTTTGATACCAAATTTCAGTTATGAACAAATTCAACATTGATTTTTTTTACATAATTTGGTTTGTGATGTTATAATTTTGTTGCAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACAAGATCTTTAAAATAGTTATTAATTTTAAATTTATTATTAATACCTCTTTATTTTTTCTATAGGTTTGTGTCCTATATGTTCATTAGGGCATGGGAAGAACAATTCCTCTGTTTGGAATTTGGATATACATTTTTTTTCAATGTAATATAATAAGGCATAGCAGATATTGCAAATGCATAAATGAAGACTCCATAAGGGTTCACTCTCCCTCCCATTCTTTTCTCATATGACAGTTTTCTAAGTAAATGACC

mRNA sequence

AATCAAACTCTTAACCTATATAAACTGCCCTAAATAATGTTCAAAAATCAAAAAACCAAAAACAAAAAGTCACCTTGATTAGTTTCACAGCTACCAATTCAAGTTTCTTATTTTCCAAACCAAAAAAAAGAAAAAAGAAAAAGGACAGAAAGAGAAGGAGAAATATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTGTGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACAAGATCTTTAAAATAGTTATTAATTTTAAATTTATTATTAATACCTCTTTATTTTTTCTATAGGTTTGTGTCCTATATGTTCATTAGGGCATGGGAAGAACAATTCCTCTGTTTGGAATTTGGATATACATTTTTTTTCAATGTAATATAATAAGGCATAGCAGATATTGCAAATGCATAAATGAAGACTCCATAAGGGTTCACTCTCCCTCCCATTCTTTTCTCATATGACAGTTTTCTAAGTAAATGACC

Coding sequence (CDS)

ATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTGTGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA

Protein sequence

MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK
BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_011649123.1 (PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_2G169690 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
          DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 3.9e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1   MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
           MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_016902588.1 (PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0

Query: 13 TKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTG 72
          T+ + + RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ DQEP S LQQTG
Sbjct: 2  TQEKIEARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 61

Query: 73 EKMVHMAQGAVDTVKETLGMGDKK 97
          EKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 62 EKMVHMAQGAVDTVKETLGMGDKK 85

BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_023515164.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19
Identity = 65/97 (67.01%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGD-MSSNSAQAQLCANSAQHSTHQ 60
          MS+MQQSLN  QTK  TQ RTEEWMEAT+    NEP D + ++SAQAQL       S H 
Sbjct: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHH 60

Query: 61 HDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
            QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 DKQEPVTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 89

BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_022964507.1 (late embryogenesis abundant protein 1-like [Cucurbita moschata])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGD-MSSNSAQAQLCANSAQHSTHQ 60
          MS+MQQS N  QTK  TQ RTEEWMEAT+    NEP D + ++SAQAQL       S H 
Sbjct: 1  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHH 60

Query: 61 HDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
            QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 DKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 89

BLAST of CsGy2G009960 vs. TAIR10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related)

HSP 1 Score: 43.5 bits (101), Expect = 8.5e-05
Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 2  SNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHD 61
          S+ Q S +AG+  GQ Q + EE++        N      + +A     + S  HS H  +
Sbjct: 3  SSQQLSHSAGEVTGQVQLKKEEYL--------NNVSHAMNQNADHHTHSQSQLHSEHDQN 62

Query: 62 -----QEPNSLLQQTGEKMVHMAQGAVDTVKETLGM 93
                + +S++QQTG ++ +MAQGA D VK TLGM
Sbjct: 63 NPSLISQASSVIQQTGGQVKNMAQGAADAVKNTLGM 90

BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|A0A0A0LI39|A0A0A0LI39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
          DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|A0A1S3CCL5|A0A1S3CCL5_CUCME (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1   MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
           MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|A0A1S4E2Z2|A0A1S4E2Z2_CUCME (late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-31
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0

Query: 13 TKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTG 72
          T+ + + RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ DQEP S LQQTG
Sbjct: 2  TQEKIEARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 61

Query: 73 EKMVHMAQGAVDTVKETLGMGDKK 97
          EKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 62 EKMVHMAQGAVDTVKETLGMGDKK 85

BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|M5XMW4|M5XMW4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G053900 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-10
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MS+MQQ LNAGQ +GQ Q + EEWM++T+    N+  +++S++  AQ    SAQH   Q 
Sbjct: 1  MSSMQQPLNAGQAQGQGQAKAEEWMQSTQ-DTANQARNVTSDA--AQXXXXSAQHGKDQ- 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
                 +QQTGE++++MA GA+D+VK TLGM +KK
Sbjct: 61 ---SAGFIQQTGEQVMNMAHGAMDSVKSTLGMNEKK 89

BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|B9HSX0|B9HSX0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G062800v3 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-09
Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQS NAGQTKG TQ + E+W E   +  T       S SA AQ   +SAQ      
Sbjct: 1  MSNMQQSFNAGQTKGNTQAKVEQWTET--IQDTANAACRDSTSAGAQSTGDSAQ----LE 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
                 LQQTGE++ H+AQ A+D+VK TLG+G  K
Sbjct: 61 KDHSAGFLQQTGEQVKHVAQDAMDSVKNTLGIGQNK 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011649123.12.0e-44100.00PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1... [more]
XP_008460707.23.9e-4093.75PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo][more]
XP_016902588.15.7e-3186.90PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo][more]
XP_023515164.15.0e-1967.01late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022964507.11.1e-1865.98late embryogenesis abundant protein 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT1G52680.18.5e-0534.38late embryogenesis abundant protein-related / LEA protein-related[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LI39|A0A0A0LI39_CUCSA1.3e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1[more]
tr|A0A1S3CCL5|A0A1S3CCL5_CUCME2.6e-4093.75late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S4E2Z2|A0A1S4E2Z2_CUCME3.8e-3186.90late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|M5XMW4|M5XMW4_PRUPE8.1e-1046.88Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G053900 PE=4 SV=1[more]
tr|B9HSX0|B9HSX0_POPTR4.0e-0947.92Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G062800v3 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009567 double fertilization forming a zygote and endosperm
biological_process GO:0008150 biological_process
cellular_component GO:0048046 apoplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G009960.1CsGy2G009960.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR34191:SF1PROTEIN UNFERTILIZED EMBRYO SAC 15coord: 1..96
NoneNo IPR availablePANTHERPTHR34191FAMILY NOT NAMEDcoord: 1..96

The following gene(s) are paralogous to this gene:

None