CsGy2G009960 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCAAACTCTTAACCTATATAAACTGCCCTAAATAATGTTCAAAAATCAAAAAACCAAAAACAAAAAGTCACCTTGATTAGTTTCACAGCTACCAATTCAAGTTTCTTATTTTCCAAACCAAAAAAAAGAAAAAAGAAAAAGGACAGAAAGAGAAGGAGAAATATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGTCATTCCAACTTTCTATTCCTTTCTTTTGCTTTTTACTTGAAATAAGTTTTGATAACTCTCCAAAATTAAATCTTACATTATTAGTTAGTAGCCTCGTACCTAAATTTTATATTTACTTAATGGTTAGATATCTCATTTTAGTTTTCGTACTTTTATAGTTTAATTATTGATTAGACCCGACCATTTTCTTGAATTGAAATCTTCACTTATTTTTTCTTTTTTTGTAAAAAGTTAAATAAAACCGTTTAAAACGCACTCATTTAACCTTATTCGATTTTGTCCAATTTTGAATTTTTTTCCAAATATAACTTTGAAATTGTAAAATCTTAATTTTTTTTCATAATATATTTTGTTTTTGGGGTTTGGATAATGAGGGGCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTGTGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGGTAATACTTCTAGAATGCATTTAATCATTCCAAACAAATTTTTAATACTGAAATTCGGTATCAACTGTAAATTTATAATCTTCGGAAGGGAATCAAACAAATATATGCCTGCAAAATAGAAAAAAACTTGCATCGATGTGGTGCTTGACCATCAATACTCCGACAATCAAGTCCCTCTAACTGTTTAAAGAGAGCTAGAGAGTATAAAAGTTAATAGGTATTTCAATGTCCATCAAATGACATATCATTGTTCCCTTGATTTATAAGAAATAAGTCTTGTACCGGTTATTTACTAATTAATCCTTGGGTAATTAATTAAGTTATTACTTAGTAACACAAGCATGTGCAAAAGTAAAACACTTCACCTAGTCTTTTCTGTCATAAGTTTGAGCCCTATACTTAGATACTATGACTTGATGGCCGACGATTCTATATACGAGTCCGTCTTTCAAACTTCTACTCTTCAACTCTCTCTAAACCATTATTAACTTGATCGTCGGAATGTTGGTGGTCAAGCAACATATTGGTACTAGTTTTTCTATTTTGAATAGCATTTGTTTGATTCTCTTTCTAAGATTACAAATTTACAGTTTGATACCAAATTTCAGTTATGAACAAATTCAACATTGATTTTTTTTACATAATTTGGTTTGTGATGTTATAATTTTGTTGCAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACAAGATCTTTAAAATAGTTATTAATTTTAAATTTATTATTAATACCTCTTTATTTTTTCTATAGGTTTGTGTCCTATATGTTCATTAGGGCATGGGAAGAACAATTCCTCTGTTTGGAATTTGGATATACATTTTTTTTCAATGTAATATAATAAGGCATAGCAGATATTGCAAATGCATAAATGAAGACTCCATAAGGGTTCACTCTCCCTCCCATTCTTTTCTCATATGACAGTTTTCTAAGTAAATGACC AATCAAACTCTTAACCTATATAAACTGCCCTAAATAATGTTCAAAAATCAAAAAACCAAAAACAAAAAGTCACCTTGATTAGTTTCACAGCTACCAATTCAAGTTTCTTATTTTCCAAACCAAAAAAAAGAAAAAAGAAAAAGGACAGAAAGAGAAGGAGAAATATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTGTGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACAAGATCTTTAAAATAGTTATTAATTTTAAATTTATTATTAATACCTCTTTATTTTTTCTATAGGTTTGTGTCCTATATGTTCATTAGGGCATGGGAAGAACAATTCCTCTGTTTGGAATTTGGATATACATTTTTTTTCAATGTAATATAATAAGGCATAGCAGATATTGCAAATGCATAAATGAAGACTCCATAAGGGTTCACTCTCCCTCCCATTCTTTTCTCATATGACAGTTTTCTAAGTAAATGACC ATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTGTGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK
BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_011649123.1 (PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_2G169690 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]) HSP 1 Score: 173.3 bits (438), Expect = 3.9e-40 Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_016902588.1 (PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo]) HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31 Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_023515164.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19 Identity = 65/97 (67.01%), Postives = 71/97 (73.20%), Query Frame = 0
BLAST of CsGy2G009960 vs. NCBI nr
Match: XP_022964507.1 (late embryogenesis abundant protein 1-like [Cucurbita moschata]) HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18 Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = 0
BLAST of CsGy2G009960 vs. TAIR10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related) HSP 1 Score: 43.5 bits (101), Expect = 8.5e-05 Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 0
BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|A0A0A0LI39|A0A0A0LI39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|A0A1S3CCL5|A0A1S3CCL5_CUCME (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40 Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|A0A1S4E2Z2|A0A1S4E2Z2_CUCME (late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 3.8e-31 Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|M5XMW4|M5XMW4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G053900 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 8.1e-10 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 0
BLAST of CsGy2G009960 vs. TrEMBL
Match: tr|B9HSX0|B9HSX0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G062800v3 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.0e-09 Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |