Cp4.1LG17g02160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g02160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG17 : 1470403 .. 1471187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGCATGCAGCAAAGTTTGAATGATGACCAAACCAAAAGCCTAACTCAGGTGATTGAAACTATGTTTCGATATTCGTTGTTTTTGTTTTGTCGTACTTTCTTGTATGTTTGATTATGGAACGATCTTATTTTTTTGTTTTTAAAACCATTTTTTTAAATACAAGAACTTTTTTTTGGGTTTGGATTGAAATTGAAGTGAAATAGATATCGAGCGTGATTTGAACGATCTCGATCTCGATGTCATGAATAGTGATTTTTTGAGGGTAAAGTTTTGGAAATGGTTAAGAATTGGTTGAAATGATGAGGCAGGCAAGAACAGAAGAATGGATGGAAGCTACCCAATCCACAGGCAATGAACCAAGAGACATTTTGCCTACTGATTCAGCTCAAGCTCAACTTTCTGCCCACCATGACAAACAAGAACCTGTTACTTTTCTCCAACAGGTTTTTCAAAAATTTTCCTTTTTTTTTTTTAATTTTTTTTTTGGATAAAAATACGTGTAAAGAGCTTCTCGTTCGGATTCGGGTTTGAATTGTGATGCTTTATTTTGTTGCAGACTGGAGAGAAGATGGTTCATATGGCTCAAGATGCTGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGAAGAACACCTAAGTTCTTTAATTTTCAAATTATTAATTTGATTGATGAAGTTTATTATTATTAGGTAATATTTTGTTTGGAATTTGGATACAAATCCTCTTGCTTTTTGAATGTAATAAAGCATAGCAAGATAATACAAGGCT

mRNA sequence

ATGTCTAGCATGCAGCAAAGTTTGAATGATGACCAAACCAAAAGCCTAACTCAGGCAAGAACAGAAGAATGGATGGAAGCTACCCAATCCACAGGCAATGAACCAAGAGACATTTTGCCTACTGATTCAGCTCAAGCTCAACTTTCTGCCCACCATGACAAACAAGAACCTGTTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCATATGGCTCAAGATGCTGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGAAGAACACCTAAGTTCTTTAATTTTCAAATTATTAATTTGATTGATGAAGTTTATTATTATTAGGTAATATTTTGTTTGGAATTTGGATACAAATCCTCTTGCTTTTTGAATGTAATAAAGCATAGCAAGATAATACAAGGCT

Coding sequence (CDS)

ATGTCTAGCATGCAGCAAAGTTTGAATGATGACCAAACCAAAAGCCTAACTCAGGCAAGAACAGAAGAATGGATGGAAGCTACCCAATCCACAGGCAATGAACCAAGAGACATTTTGCCTACTGATTCAGCTCAAGCTCAACTTTCTGCCCACCATGACAAACAAGAACCTGTTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCATATGGCTCAAGATGCTGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

Protein sequence

MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Homology
[Close]
BLAST of Cp4.1LG17g02160 vs. TrEMBL
Match: A0A0A0LI39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.7e-20
Identity = 65/97 (67.01%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHH 60
          MS+MQQSLN  QTK  TQ RTEEWMEAT+    NEP D + ++SAQAQL       S H 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGD-MSSNSAQAQLCANSAQHSTHQ 60

Query: 61 DKQEPVTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
            QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 HDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]
BLAST of Cp4.1LG17g02160 vs. TrEMBL
Match: M5XMW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014053mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-13
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTF 60
          MSSMQQ LN  Q +   QA+ EEWM++TQ T N+ R++    +  A+ SA H K +   F
Sbjct: 1  MSSMQQPLNAGQAQGQGQAKAEEWMQSTQDTANQARNVTSDAAQSAKESAQHGKDQSAGF 60

Query: 61 LQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
          +QQTGE++++MA  A+D+VK TLGM +KK
Sbjct: 61 IQQTGEQVMNMAHGAMDSVKSTLGMNEKK 89

[Close]
BLAST of Cp4.1LG17g02160 vs. TrEMBL
Match: B9HSX0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07330g PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEP-RDILPTDSAQAQLSAHHDKQEPVT 60
          MS+MQQS N  QTK  TQA+ E+W E  Q T N   RD     +     SA  +K     
Sbjct: 1  MSNMQQSFNAGQTKGNTQAKVEQWTETIQDTANAACRDSTSAGAQSTGDSAQLEKDHSAG 60

Query: 61 FLQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
          FLQQTGE++ H+AQDA+D+VK TLG+G  K
Sbjct: 61 FLQQTGEQVKHVAQDAMDSVKNTLGIGQNK 90

[Close]
BLAST of Cp4.1LG17g02160 vs. TrEMBL
Match: A0A022R1C4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017234mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTF 60
          MSS Q   N  Q+   TQA+ EEW+++ + T +   D     + + Q  AH  K+E   F
Sbjct: 1  MSSTQ--FNAGQSHGQTQAKAEEWVDSAKDTAHAAHDKACDAAGKTQEQAHRSKEESAGF 60

Query: 61 LQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
          LQQTGE++ HMAQ A+D VK TLGMG+KK
Sbjct: 61 LQQTGEQVAHMAQGAIDGVKNTLGMGEKK 87

[Close]
BLAST of Cp4.1LG17g02160 vs. TrEMBL
Match: R0I6M1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015313mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-10
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTF 60
          MS++QQS N  QTK   Q + E+W E+ + T    RD     +   + SA H +Q+   F
Sbjct: 1  MSNLQQSYNAGQTKGQAQEKAEQWTESAKETAQSARDKTANAAQSTKESAQHGQQQASGF 60

Query: 61 LQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
          +QQTGE + +MAQ AVD VK TLG+ DKK
Sbjct: 61 IQQTGESVKNMAQGAVDGVKNTLGINDKK 89

[Close]
BLAST of Cp4.1LG17g02160 vs. TAIR10
Match: AT4G13560.1 (AT4G13560.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1 

Query: 11  DQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTFLQQTGEKMVH 70
           D+T  LTQ+  ++  + TQS     RD     S  A  SA H++++      QTGE + +
Sbjct: 35  DKTADLTQSARDKAADLTQSA----RDKTADGSHSANKSAQHNQEQAAGLFGQTGESVKN 94

Query: 71  MAQDAVDTVKETLGMGDKK 90
           MAQ A+D VK +LGM +KK
Sbjct: 95  MAQGALDGVKNSLGMNEKK 109

[Close]
BLAST of Cp4.1LG17g02160 vs. NCBI nr
Match: gi|659121530|ref|XP_008460707.1| (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHH 60
          MS+MQQSLN  QTK  TQARTEEWMEAT+    +EPRD + ++SAQAQL       S H 
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRD-MSSNSAQAQLCANSAQHSTHQ 60

Query: 61 DKQEPVTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
            QEP +FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 RDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]
BLAST of Cp4.1LG17g02160 vs. NCBI nr
Match: gi|778668598|ref|XP_011649123.1| (PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 8.2e-20
Identity = 65/97 (67.01%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHH 60
          MS+MQQSLN  QTK  TQ RTEEWMEAT+    NEP D + ++SAQAQL       S H 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGD-MSSNSAQAQLCANSAQHSTHQ 60

Query: 61 DKQEPVTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
            QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 HDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]
BLAST of Cp4.1LG17g02160 vs. NCBI nr
Match: gi|596289396|ref|XP_007226075.1| (hypothetical protein PRUPE_ppa014053mg [Prunus persica])

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTF 60
          MSSMQQ LN  Q +   QA+ EEWM++TQ T N+ R++    +  A+ SA H K +   F
Sbjct: 1  MSSMQQPLNAGQAQGQGQAKAEEWMQSTQDTANQARNVTSDAAQSAKESAQHGKDQSAGF 60

Query: 61 LQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
          +QQTGE++++MA  A+D+VK TLGM +KK
Sbjct: 61 IQQTGEQVMNMAHGAMDSVKSTLGMNEKK 89

[Close]
BLAST of Cp4.1LG17g02160 vs. NCBI nr
Match: gi|645234967|ref|XP_008224055.1| (PREDICTED: late embryogenesis abundant protein 1 [Prunus mume])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTF 60
           MSSMQQ LN  Q +   QA+ EEWM++TQ T N+ +++    +  A+ SA H K +   F
Sbjct: 64  MSSMQQPLNAGQAQGQGQAKAEEWMQSTQDTANQAKNMTSDAAQSAKESAQHGKDQSAGF 123

Query: 61  LQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
           +QQTGE++++MA  A+D+VK TLGM +KK
Sbjct: 124 IQQTGEQVMNMAHGAMDSVKSTLGMNEKK 152

[Close]
BLAST of Cp4.1LG17g02160 vs. NCBI nr
Match: gi|657997789|ref|XP_008391284.1| (PREDICTED: late embryogenesis abundant protein 1 [Malus domestica])

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1  MSSMQQSLNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPVTF 60
          MSSMQQ  N  Q++   QA+ EEWM++TQ T ++ R+     +  A+ SA H K +   F
Sbjct: 1  MSSMQQPFNAGQSQGQGQAKAEEWMQSTQETAHQARNATSDAAQSAKESAQHGKDQSAGF 60

Query: 61 LQQTGEKMVHMAQDAVDTVKETLGMGDKK 90
          LQQTGE++++MA  A+D+VK TLGM +KK
Sbjct: 61 LQQTGEQVMNMAHGAMDSVKNTLGMNEKK 89

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g02160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g02160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI39_CUCSA5.7e-2067.01Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169690 PE=4 SV=1[more]
M5XMW4_PRUPE2.3e-1348.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014053mg PE=4 SV=1[more]
B9HSX0_POPTR8.2e-1148.89Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07330g PE=4 SV=1[more]
A0A022R1C4_ERYGU2.4e-1046.07Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017234mg PE=4 SV=1[more]
R0I6M1_9BRAS3.1e-1044.94Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015313mg PE=4 SV=1[more]
BLAST of Cp4.1LG17g02160 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13560.11.9e-0639.24 Late embryogenesis abundant protein (LEA) family protein[more]
BLAST of Cp4.1LG17g02160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121530|ref|XP_008460707.1|1.5e-2169.07PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo][more]
gi|778668598|ref|XP_011649123.1|8.2e-2067.01PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus][more]
gi|596289396|ref|XP_007226075.1|3.3e-1348.31hypothetical protein PRUPE_ppa014053mg [Prunus persica][more]
gi|645234967|ref|XP_008224055.1|1.3e-1247.19PREDICTED: late embryogenesis abundant protein 1 [Prunus mume][more]
gi|657997789|ref|XP_008391284.1|4.8e-1247.19PREDICTED: late embryogenesis abundant protein 1 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009567 double fertilization forming a zygote and endosperm
cellular_component GO:0005575 cellular_component
cellular_component GO:0048046 apoplast
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g02160.1Cp4.1LG17g02160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34191FAMILY NOT NAMEDcoord: 1..89
score: 1.8
NoneNo IPR availablePANTHERPTHR34191:SF1SUBFAMILY NOT NAMEDcoord: 1..89
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g02160Cucsa.383150Cucumber (Gy14) v1cgycpeB1009
Cp4.1LG17g02160CmaCh06G012830Cucurbita maxima (Rimu)cmacpeB824
Cp4.1LG17g02160CmaCh08G010470Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g02160CmoCh08G010180Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g02160Cla007634Watermelon (97103) v1cpewmB334
Cp4.1LG17g02160Csa2G169690Cucumber (Chinese Long) v2cpecuB306
Cp4.1LG17g02160MELO3C023065Melon (DHL92) v3.5.1cpemeB310
Cp4.1LG17g02160ClCG05G003830Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g02160ClCG06G007420Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g02160CSPI02G09830Wild cucumber (PI 183967)cpecpiB306
Cp4.1LG17g02160Lsi09G011770Bottle gourd (USVL1VR-Ls)cpelsiB254
Cp4.1LG17g02160Lsi05G017850Bottle gourd (USVL1VR-Ls)cpelsiB267
Cp4.1LG17g02160MELO3C023065.2Melon (DHL92) v3.6.1cpemedB362
Cp4.1LG17g02160CsaV3_2G012270Cucumber (Chinese Long) v3cpecucB0377
Cp4.1LG17g02160Bhi12G001354Wax gourdcpewgoB0385
Cp4.1LG17g02160CsGy2G009960Cucumber (Gy14) v2cgybcpeB203
Cp4.1LG17g02160Carg11002Silver-seed gourdcarcpeB1503
Cp4.1LG17g02160Carg06256Silver-seed gourdcarcpeB1330
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g02160Melon (DHL92) v3.5.1cpemeB309
Cp4.1LG17g02160Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g02160Cucumber (Gy14) v2cgybcpeB352
Cp4.1LG17g02160Cucumber (Gy14) v2cgybcpeB354
Cp4.1LG17g02160Melon (DHL92) v3.6.1cpemedB361
Cp4.1LG17g02160Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g02160Silver-seed gourdcarcpeB0323
Cp4.1LG17g02160Silver-seed gourdcarcpeB0333
Cp4.1LG17g02160Silver-seed gourdcarcpeB1096
Cp4.1LG17g02160Cucumber (Chinese Long) v3cpecucB0383
Cp4.1LG17g02160Cucumber (Chinese Long) v3cpecucB0385
Cp4.1LG17g02160Wax gourdcpewgoB0388
Cp4.1LG17g02160Wax gourdcpewgoB0404
Cp4.1LG17g02160Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG17g02160Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g02160Cucurbita pepo (Zucchini)cpecpeB340
Cp4.1LG17g02160Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g02160Cucumber (Gy14) v1cgycpeB0675
Cp4.1LG17g02160Cucurbita maxima (Rimu)cmacpeB266
Cp4.1LG17g02160Cucurbita maxima (Rimu)cmacpeB388
Cp4.1LG17g02160Cucurbita maxima (Rimu)cmacpeB631
Cp4.1LG17g02160Cucurbita moschata (Rifu)cmocpeB230
Cp4.1LG17g02160Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g02160Cucurbita moschata (Rifu)cmocpeB580
Cp4.1LG17g02160Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g02160Wild cucumber (PI 183967)cpecpiB310
Cp4.1LG17g02160Wild cucumber (PI 183967)cpecpiB312
Cp4.1LG17g02160Cucumber (Chinese Long) v2cpecuB310
Cp4.1LG17g02160Bottle gourd (USVL1VR-Ls)cpelsiB269
Cp4.1LG17g02160Watermelon (Charleston Gray)cpewcgB306
Cp4.1LG17g02160Watermelon (97103) v1cpewmB331
Cp4.1LG17g02160Watermelon (97103) v1cpewmB326