Cla007634 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007634
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Late embryogenesis abundant protein 1 (AHRD V1 ***- LEA1_CICAR)
Location	Chr6 : 8639924 .. 8640735 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGGTCACACCAACTCTCTACTTTCTTTCTTTTTTTTCTCTTTATTTTATATATATTTCTATAAATCTCTTGAAACTTAAACTTTATTTTAATCTGTAAACTTATTTGCCTCTATATTTTAGAAGTTCTGTGGAGATTTCTCATTTTTGCTTAATTATTGGTTAGATACTGACATTCTCTTAAATTGAAATTCTTCTCTTTAATTTATCCTTTTTTTTCCGTTTTTTTTTTTTTTTTTTTTTGTCAAATTAGATAAAATTGTTTCAAAGTACCCAAACAAAAATAGAAACAGTCTCAAAAGTGTATATATATATATATACCAAAATGATATTTTGACCTTACCTGTTCTTGTCAAATTTTTGCACTTTGAAAATATAAAATATGACATTAAAAGTGTAAAATCTAAATGTTTTGAAAATATAATTTGTTTTTGGGGGTTTGGAATGAGGGCAGGCAAGAACAGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAACAAGAACCCACTACTTTTCTCCAACAGGTTCCATTATATATATATATATATTTGAAATTGTTTTTATTCATATGATATAATTGTAGTTGTAATGTTATAATTTGTTGCAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

mRNA sequence

ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGGCAAGAACAGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAACAAGAACCCACTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

Coding sequence (CDS)

ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGGCAAGAACAGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAACAAGAACCCACTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

Protein sequence

MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

Homology

[Close]

BLAST of Cla007634 vs. Swiss-Prot
Match: LEA1_CICAR (Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 33/81 (40.74%), Postives = 37/81 (45.68%), Query Frame = 1


Query: 10  AGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGE 69
           A   K +TQ  TE   E  +  T   RE     GQ   S   +A   K     FLQQTGE
Sbjct: 87  AQAAKDKTQQTTEATKEKAQDTTGRAREKGSEMGQ---STKETAQSGKDNSAGFLQQTGE 146

Query: 70  KMVHMAQDAVDTVKETLGMGD 91
           K+  MAQ A D VK+T GM +
Sbjct: 147 KVKGMAQGATDAVKQTFGMAN 164

[Close]

BLAST of Cla007634 vs. TrEMBL
Match: A0A0A0LI39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-31
Identity = 75/96 (78.12%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQE 60
          MSNMQQSLNAGQTKGQTQ RTEEWMEA K  PT+EP +MS NS Q QL   SA HS HQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 KQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
           QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of Cla007634 vs. TrEMBL
Match: B9HSX0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07330g PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-16
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MSNMQQS NAGQTKG TQA+ E+W E I+   +     S ++G    S   SA  EK   
Sbjct: 1  MSNMQQSFNAGQTKGNTQAKVEQWTETIQDTANAACRDSTSAGAQ--STGDSAQLEKDHS 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
            FLQQTGE++ H+AQDA+D+VK TLG+G  K
Sbjct: 61 AGFLQQTGEQVKHVAQDAMDSVKNTLGIGQNK 90

[Close]

BLAST of Cla007634 vs. TrEMBL
Match: R0I6M1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015313mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MSN+QQS NAGQTKGQ Q + E+W E+ K      R+ + N+ Q   S   SA   +Q+ 
Sbjct: 1  MSNLQQSYNAGQTKGQAQEKAEQWTESAKETAQSARDKTANAAQ---STKESAQHGQQQA 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
          + F+QQTGE + +MAQ AVD VK TLG+ DKK
Sbjct: 61 SGFIQQTGESVKNMAQGAVDGVKNTLGINDKK 89

[Close]

BLAST of Cla007634 vs. TrEMBL
Match: A0A087HC44_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G277200 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.7e-15
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MSN+QQS NAGQTKGQ   + E+W E+ K      R+ + N+ Q   S   SA   +Q+ 
Sbjct: 1  MSNLQQSYNAGQTKGQANEKAEQWTESAKETAHSARDKTANAAQ---STKESAQHGQQQA 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
          + F+QQTGE + +MAQ AVD VK TLGM +KK
Sbjct: 61 SGFIQQTGESVKNMAQGAVDGVKNTLGMNEKK 89

[Close]

BLAST of Cla007634 vs. TrEMBL
Match: M5XMW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014053mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.7e-15
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MS+MQQ LNAGQ +GQ QA+ EEWM++ +   ++ R ++ ++ Q   SA  SA   K + 
Sbjct: 1  MSSMQQPLNAGQAQGQGQAKAEEWMQSTQDTANQARNVTSDAAQ---SAKESAQHGKDQS 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
            F+QQTGE++++MA  A+D+VK TLGM +KK
Sbjct: 61 AGFIQQTGEQVMNMAHGAMDSVKSTLGMNEKK 89

[Close]

BLAST of Cla007634 vs. NCBI nr
Match: gi|659121530|ref|XP_008460707.1| (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-34
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQE 60
          MSNMQQSLNAGQTKGQTQARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 KQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
           QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of Cla007634 vs. NCBI nr
Match: gi|778668598|ref|XP_011649123.1| (PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-31
Identity = 75/96 (78.12%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQE 60
          MSNMQQSLNAGQTKGQTQ RTEEWMEA K  PT+EP +MS NS Q QL   SA HS HQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 KQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
           QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of Cla007634 vs. NCBI nr
Match: gi|743896416|ref|XP_011041479.1| (PREDICTED: late embryogenesis abundant protein 1 [Populus euphratica])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MSN QQS NAGQTKG TQA+ E+W E I+   +     S ++G P  S   SA  EK + 
Sbjct: 1  MSNTQQSFNAGQTKGNTQAKVEQWTETIQDTANAACRDSRSAGAP--STGDSAQLEKDQS 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
            FLQQTGE++ H+AQDA+D+VK TLGMG  K
Sbjct: 61 AGFLQQTGEQVKHVAQDAMDSVKNTLGMGQNK 90

[Close]

BLAST of Cla007634 vs. NCBI nr
Match: gi|224107571|ref|XP_002314523.1| (hypothetical protein POPTR_0010s07330g [Populus trichocarpa])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MSNMQQS NAGQTKG TQA+ E+W E I+   +     S ++G    S   SA  EK   
Sbjct: 1  MSNMQQSFNAGQTKGNTQAKVEQWTETIQDTANAACRDSTSAGAQ--STGDSAQLEKDHS 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
            FLQQTGE++ H+AQDA+D+VK TLG+G  K
Sbjct: 61 AGFLQQTGEQVKHVAQDAMDSVKNTLGIGQNK 90

[Close]

BLAST of Cla007634 vs. NCBI nr
Match: gi|565483050|ref|XP_006299165.1| (hypothetical protein CARUB_v10015313mg [Capsella rubella])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEP 60
          MSN+QQS NAGQTKGQ Q + E+W E+ K      R+ + N+ Q   S   SA   +Q+ 
Sbjct: 1  MSNLQQSYNAGQTKGQAQEKAEQWTESAKETAQSARDKTANAAQ---STKESAQHGQQQA 60

Query: 61 TTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK 93
          + F+QQTGE + +MAQ AVD VK TLG+ DKK
Sbjct: 61 SGFIQQTGESVKNMAQGAVDGVKNTLGINDKK 89

The following BLAST results are available for this feature:

BLAST of Cla007634 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LEA1_CICAR	1.1e-06	40.74	Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1	[more]

BLAST of Cla007634 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI39_CUCSA	3.3e-31	78.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169690 PE=4 SV=1	[more]
B9HSX0_POPTR	8.8e-16	52.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07330g PE=4 SV=1	[more]
R0I6M1_9BRAS	1.1e-15	50.00	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015313mg PE=4 SV=1	[more]
A0A087HC44_ARAAL	5.7e-15	48.91	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G277200 PE=4 SV=1	[more]
M5XMW4_PRUPE	9.7e-15	46.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014053mg PE=4 SV=1	[more]

BLAST of Cla007634 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121530\|ref\|XP_008460707.1\|	4.6e-34	83.33	PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]	[more]
gi\|778668598\|ref\|XP_011649123.1\|	4.8e-31	78.13	PREDICTED: late embryogenesis abundant protein D-7 [Cucumis sativus]	[more]
gi\|743896416\|ref\|XP_011041479.1\|	2.5e-16	53.26	PREDICTED: late embryogenesis abundant protein 1 [Populus euphratica]	[more]
gi\|224107571\|ref\|XP_002314523.1\|	1.3e-15	52.17	hypothetical protein POPTR_0010s07330g [Populus trichocarpa]	[more]
gi\|565483050\|ref\|XP_006299165.1\|	1.6e-15	50.00	hypothetical protein CARUB_v10015313mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009567	double fertilization forming a zygote and endosperm
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007634	Cla007634.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..33 score: 1.7E-27coord: 50..92 score: 1.7
None	No IPR available	PANTHER	PTHR34191:SF1	SUBFAMILY NOT NAMED	coord: 50..92 score: 1.7E-27coord: 1..33 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007634	Cla97C06G117170	Watermelon (97103) v2	wmwmbB406
Cla007634	Cla97C05G084470	Watermelon (97103) v2	wmwmbB402
Cla007634	Csa2G169690	Cucumber (Chinese Long) v2	cuwmB172
Cla007634	MELO3C023065	Melon (DHL92) v3.5.1	mewmB430
Cla007634	ClCG05G003830	Watermelon (Charleston Gray)	wcgwmB311
Cla007634	ClCG06G007420	Watermelon (Charleston Gray)	wcgwmB344
Cla007634	CSPI02G09830	Wild cucumber (PI 183967)	cpiwmB174
Cla007634	Cucsa.383150	Cucumber (Gy14) v1	cgywmB691
Cla007634	CmaCh06G012830	Cucurbita maxima (Rimu)	cmawmB811
Cla007634	CmaCh08G010470	Cucurbita maxima (Rimu)	cmawmB878
Cla007634	CmoCh08G010180	Cucurbita moschata (Rifu)	cmowmB867
Cla007634	Lsi09G011770	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla007634	Lsi05G017850	Bottle gourd (USVL1VR-Ls)	lsiwmB382
Cla007634	Cp4.1LG17g02160	Cucurbita pepo (Zucchini)	cpewmB334
Cla007634	CsGy2G009960	Cucumber (Gy14) v2	cgybwmB163
Cla007634	MELO3C023065.2	Melon (DHL92) v3.6.1	medwmB418
Cla007634	Carg06256	Silver-seed gourd	carwmB0962
Cla007634	Carg11002	Silver-seed gourd	carwmB1077
Cla007634	CsaV3_2G012270	Cucumber (Chinese Long) v3	cucwmB184
Cla007634	Bhi12G001354	Wax gourd	wgowmB097

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007634	Wax gourd	wgowmB106
Cla007634	Wax gourd	wgowmB288
Cla007634	Watermelon (97103) v1	wmwmB116
Cla007634	Watermelon (97103) v1	wmwmB138
Cla007634	Cucumber (Gy14) v1	cgywmB249
Cla007634	Cucumber (Gy14) v1	cgywmB483
Cla007634	Cucurbita maxima (Rimu)	cmawmB250
Cla007634	Cucurbita maxima (Rimu)	cmawmB358
Cla007634	Cucurbita maxima (Rimu)	cmawmB611
Cla007634	Cucurbita moschata (Rifu)	cmowmB239
Cla007634	Cucurbita moschata (Rifu)	cmowmB353
Cla007634	Cucurbita moschata (Rifu)	cmowmB604
Cla007634	Cucurbita moschata (Rifu)	cmowmB802
Cla007634	Melon (DHL92) v3.5.1	mewmB486
Cla007634	Melon (DHL92) v3.5.1	mewmB390
Cla007634	Watermelon (Charleston Gray)	wcgwmB395
Cla007634	Cucumber (Chinese Long) v2	cuwmB277
Cla007634	Cucumber (Chinese Long) v2	cuwmB279
Cla007634	Cucurbita pepo (Zucchini)	cpewmB161
Cla007634	Cucurbita pepo (Zucchini)	cpewmB622
Cla007634	Cucurbita pepo (Zucchini)	cpewmB752
Cla007634	Cucurbita pepo (Zucchini)	cpewmB853
Cla007634	Bottle gourd (USVL1VR-Ls)	lsiwmB383
Cla007634	Cucumber (Gy14) v2	cgybwmB260
Cla007634	Cucumber (Gy14) v2	cgybwmB262
Cla007634	Melon (DHL92) v3.6.1	medwmB384
Cla007634	Melon (DHL92) v3.6.1	medwmB474
Cla007634	Silver-seed gourd	carwmB0219
Cla007634	Silver-seed gourd	carwmB0224
Cla007634	Silver-seed gourd	carwmB0785
Cla007634	Cucumber (Chinese Long) v3	cucwmB286
Cla007634	Cucumber (Chinese Long) v3	cucwmB288
Cla007634	Watermelon (97103) v2	wmwmbB413